Gene annotation
Transcriptome id Sobic.003G424800.2,Sobic.003G424800.1
Synonym Sb03g045720
Functional annotation MKI67 FHA domain-interacting nucleolar phosphoprotein (PubMedID : 24906815)
RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6Q872
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF243
NCBI CDD KOG4208; Nucleolar RNA-binding protein NIFK
KEGG Orthology K14838; nucleolar protein 15
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G04600 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os08g31810.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a010228 , Zm00025a031024
Brachypodium KQJ98239
Barley HORVU2Hr1G033820.10 , HORVU2Hr1G033820.11 , HORVU6Hr1G002240.8 , HORVU6Hr1G002240.9 , HORVU6Hr1G002240.4 , HORVU6Hr1G002240.5 , HORVU6Hr1G002240.6 , HORVU6Hr1G002240.7 , HORVU6Hr1G002240.2 , HORVU6Hr1G002240.3 , HORVU2Hr1G033820.1 , HORVU2Hr1G033820.2 , HORVU2Hr1G033820.3 , HORVU2Hr1G033820.4 , HORVU2Hr1G033820.6 , HORVU2Hr1G033820.7 , HORVU2Hr1G033820.8 , HORVU2Hr1G033820.9
Wheat TraesCS2B02G205700 , TraesCS6B02G017700 , TraesCS2D02G187400 , TraesCS2D02G187400 , TraesCS6D02G014200 , TraesCS6A02G011400 , TraesCS2A02G178900
Populus -


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cDNA sequences
Sobic.003G424800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G117400 DNA-directed RNA polymerase I subunit RPA12, putative, expressed K03000: RPA12, DNA-directed RNA polymerase I subunit RPA12
2 Sobic.002G116200 adenylate kinase isoenzyme 6, putative, expressed K18532: AK6, adenylate kinase
3 Sobic.002G413400 ribosomal protein, putative, expressed K14842: ribosome biogenesis protein NSA2
4 Sobic.001G147100 pre-rRNA-processing protein TSR2, putative, expressed K14800: pre-rRNA-processing protein TSR2
5 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
6 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
7 Sobic.010G008100 RNA recognition motif containing protein, putative, expressed -
8 Sobic.009G008600 REX1 DNA Repair family protein, expressed K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
9 Sobic.001G331900 expressed protein -
10 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
11 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
12 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
13 Sobic.007G167700 expressed protein -
14 Sobic.004G130200 ribosome biogenesis protein NEP1, putative, expressed K14568: EMG1, rRNA small subunit pseudouridine methyltransferase Nep1
15 Sobic.006G226500 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
16 Sobic.004G018800 HVA22, putative, expressed -
17 Sobic.004G069500 expressed protein -
18 Sobic.006G220700 signal recognition particle 14 kDa protein, putative, expressed K03104: signal recognition particle subunit SRP14
19 Sobic.001G285300 expressed protein -
20 Sobic.003G127700 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1


Gene co-expression network
sample Sobic003G424800 Sobic003G424800 Sobic001G117400 Sobic001G117400 Sobic003G424800--Sobic001G117400 Sobic002G116200 Sobic002G116200 Sobic003G424800--Sobic002G116200 Sobic002G413400 Sobic002G413400 Sobic003G424800--Sobic002G413400 Sobic001G147100 Sobic001G147100 Sobic003G424800--Sobic001G147100 Sobic003G362400 Sobic003G362400 Sobic003G424800--Sobic003G362400 Sobic001G529000 Sobic001G529000 Sobic003G424800--Sobic001G529000 Sobic010G008100 Sobic010G008100 Sobic003G424800--Sobic010G008100 Sobic009G008600 Sobic009G008600 Sobic003G424800--Sobic009G008600 Sobic001G331900 Sobic001G331900 Sobic003G424800--Sobic001G331900 Sobic003G160900 Sobic003G160900 Sobic001G117400--Sobic003G160900 Sobic001G117400--Sobic003G424800 Sobic002G371100 Sobic002G371100 Sobic001G117400--Sobic002G371100 Sobic005G191600 Sobic005G191600 Sobic001G117400--Sobic005G191600 Sobic002G255100 Sobic002G255100 Sobic001G117400--Sobic002G255100 Sobic004G002350 Sobic004G002350 Sobic001G117400--Sobic004G002350 Sobic001G018800 Sobic001G018800 Sobic001G117400--Sobic001G018800 Sobic001G404100 Sobic001G404100 Sobic001G117400--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic001G117400--Sobic001G481700 Sobic002G116200--Sobic003G362400 Sobic005G111100 Sobic005G111100 Sobic002G116200--Sobic005G111100 Sobic005G157200 Sobic005G157200 Sobic002G116200--Sobic005G157200 Sobic002G078400 Sobic002G078400 Sobic002G116200--Sobic002G078400 Sobic003G321700 Sobic003G321700 Sobic002G116200--Sobic003G321700 Sobic001G445800 Sobic001G445800 Sobic002G116200--Sobic001G445800 Sobic004G300900 Sobic004G300900 Sobic002G116200--Sobic004G300900 Sobic001G128400 Sobic001G128400 Sobic002G116200--Sobic001G128400 Sobic002G116200--Sobic001G331900 Sobic001G402300 Sobic001G402300 Sobic002G413400--Sobic001G402300 Sobic009G232000 Sobic009G232000 Sobic002G413400--Sobic009G232000 Sobic002G413400--Sobic009G008600 Sobic010G100000 Sobic010G100000 Sobic002G413400--Sobic010G100000 Sobic006G222400 Sobic006G222400 Sobic002G413400--Sobic006G222400 Sobic002G413400--Sobic003G424800 Sobic001G126200 Sobic001G126200 Sobic002G413400--Sobic001G126200 Sobic001G513500 Sobic001G513500 Sobic002G413400--Sobic001G513500 Sobic008G130400 Sobic008G130400 Sobic002G413400--Sobic008G130400 Sobic001G147100--Sobic003G424800 Sobic001G147100--Sobic001G404100 Sobic006G011000 Sobic006G011000 Sobic001G147100--Sobic006G011000 Sobic009G187300 Sobic009G187300 Sobic001G147100--Sobic009G187300 Sobic002G406600 Sobic002G406600 Sobic001G147100--Sobic002G406600 Sobic004G060600 Sobic004G060600 Sobic001G147100--Sobic004G060600 Sobic001G408100 Sobic001G408100 Sobic001G147100--Sobic001G408100 Sobic009G104000 Sobic009G104000 Sobic001G147100--Sobic009G104000 Sobic002G266800 Sobic002G266800 Sobic001G147100--Sobic002G266800 Sobic003G362400--Sobic002G078400 Sobic004G107600 Sobic004G107600 Sobic003G362400--Sobic004G107600 Sobic003G362400--Sobic001G529000 Sobic007G091000 Sobic007G091000 Sobic003G362400--Sobic007G091000 Sobic003G362400--Sobic005G111100 Sobic003G362400--Sobic002G116200 Sobic003G362400--Sobic001G331900 Sobic010G213400 Sobic010G213400 Sobic003G362400--Sobic010G213400 Sobic003G362400--Sobic009G232000 Sobic001G529000--Sobic003G362400 Sobic004G248800 Sobic004G248800 Sobic001G529000--Sobic004G248800 Sobic003G124800 Sobic003G124800 Sobic001G529000--Sobic003G124800 Sobic001G529000--Sobic001G331900 Sobic001G529000--Sobic005G157200 Sobic007G163700 Sobic007G163700 Sobic001G529000--Sobic007G163700 Sobic010G039800 Sobic010G039800 Sobic001G529000--Sobic010G039800 Sobic007G203700 Sobic007G203700 Sobic001G529000--Sobic007G203700 Sobic001G529000--Sobic004G300900 Sobic001G403700 Sobic001G403700 Sobic010G008100--Sobic001G403700 Sobic010G008100--Sobic009G008600 Sobic008G132800 Sobic008G132800 Sobic010G008100--Sobic008G132800 Sobic010G008100--Sobic009G104000 Sobic010G008100--Sobic003G424800 Sobic010G008100--Sobic010G213400 Sobic010G008100--Sobic002G078400 Sobic010G008100--Sobic001G331900 Sobic010G008100--Sobic005G157200 Sobic009G008600--Sobic005G157200 Sobic009G008600--Sobic010G213400 Sobic009G008600--Sobic001G331900 Sobic009G008600--Sobic008G132800 Sobic009G008600--Sobic001G529000 Sobic009G008600--Sobic003G362400 Sobic009G008600--Sobic006G222400 Sobic002G263800 Sobic002G263800 Sobic009G008600--Sobic002G263800 Sobic009G008600--Sobic010G008100 Sobic001G331900--Sobic004G107600 Sobic001G331900--Sobic005G157200 Sobic008G058300 Sobic008G058300 Sobic001G331900--Sobic008G058300 Sobic001G331900--Sobic002G078400 Sobic001G331900--Sobic008G132800 Sobic001G331900--Sobic004G300900 Sobic001G377800 Sobic001G377800 Sobic001G331900--Sobic001G377800 Sobic001G331900--Sobic003G362400 Sobic001G331900--Sobic001G529000
Octagon: transcription factors


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