Gene annotation
Transcriptome id Sobic.009G190300.1
Synonym Sb09g024910
Functional annotation Brix domain containing protein, putative, expressed
UniProt C5Z0R9
Pfam PF04427
Panther DB PTHR12728 PTHR12728:SF0
NCBI CDD KOG3031; Protein required for biogenesis of the ribosomal 60S subunit
KEGG Orthology K14847; ribosome production factor 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G23620 : Ribosomal RNA processing Brix domain protein
RAP-DB (Rice) LOC_Os01g33030.1 : Brix domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022193 , Zm00025a044163
Brachypodium KQK11032 , KQK11033
Barley HORVU5Hr1G061870.3 , HORVU5Hr1G061870.2 , HORVU5Hr1G061870.1 , HORVU5Hr1G061870.4
Wheat TraesCS5B02G420100 , TraesCS2A02G080900 , TraesCS2D02G079000 , TraesCS5D02G426000 , TraesCS5A02G418000 , TraesCS2D02G059200 , TraesCS5B02G208800 , TraesCS5A02G215000 , TraesCS5D02G217000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G003800 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
2 Sobic.008G004000 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
3 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
4 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
5 Sobic.003G338100 methionyl-tRNA synthetase, putative, expressed K15437: AIMP1, aminoacyl tRNA synthase complex-interacting multifunctional protein 1
6 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
7 Sobic.001G091900 WD domain, G-beta repeat domain containing protein, expressed K15443: TRM82, tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
8 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
9 Sobic.004G216400 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
10 Sobic.001G216200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
11 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
12 Sobic.001G491100 structural constituent of ribosome, putative, expressed K02911: RP-L32, MRPL32, large subunit ribosomal protein L32
13 Sobic.001G467300 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
14 Sobic.009G065400 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
15 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
16 Sobic.009G219400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
17 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -
18 Sobic.010G103900 ribosomal protein L51, putative, expressed K17424: large subunit ribosomal protein L43
19 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
20 Sobic.003G442400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E


Gene co-expression network
sample Sobic009G190300 Sobic009G190300 Sobic005G003800 Sobic005G003800 Sobic009G190300--Sobic005G003800 Sobic008G004000 Sobic008G004000 Sobic009G190300--Sobic008G004000 Sobic001G481700 Sobic001G481700 Sobic009G190300--Sobic001G481700 Sobic002G341800 Sobic002G341800 Sobic009G190300--Sobic002G341800 Sobic003G338100 Sobic003G338100 Sobic009G190300--Sobic003G338100 Sobic002G394600 Sobic002G394600 Sobic009G190300--Sobic002G394600 Sobic001G091900 Sobic001G091900 Sobic009G190300--Sobic001G091900 Sobic001G404100 Sobic001G404100 Sobic009G190300--Sobic001G404100 Sobic004G216400 Sobic004G216400 Sobic009G190300--Sobic004G216400 Sobic005G003800--Sobic008G004000 Sobic005G003800--Sobic009G190300 Sobic001G018800 Sobic001G018800 Sobic005G003800--Sobic001G018800 Sobic010G100000 Sobic010G100000 Sobic005G003800--Sobic010G100000 Sobic005G003800--Sobic001G481700 Sobic009G232000 Sobic009G232000 Sobic005G003800--Sobic009G232000 Sobic009G065400 Sobic009G065400 Sobic005G003800--Sobic009G065400 Sobic002G364100 Sobic002G364100 Sobic005G003800--Sobic002G364100 Sobic010G046300 Sobic010G046300 Sobic005G003800--Sobic010G046300 Sobic008G004000--Sobic005G003800 Sobic008G004000--Sobic009G232000 Sobic008G004000--Sobic009G190300 Sobic008G004000--Sobic009G065400 Sobic008G004000--Sobic001G018800 Sobic001G011200 Sobic001G011200 Sobic008G004000--Sobic001G011200 Sobic001G216200 Sobic001G216200 Sobic008G004000--Sobic001G216200 Sobic008G004000--Sobic010G100000 Sobic002G364500 Sobic002G364500 Sobic008G004000--Sobic002G364500 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic004G224900 Sobic004G224900 Sobic001G481700--Sobic004G224900 Sobic001G481700--Sobic010G100000 Sobic001G481700--Sobic002G341800 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic002G341800--Sobic001G458700 Sobic002G341800--Sobic001G404100 Sobic002G341800--Sobic001G481700 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic003G338100--Sobic009G190300 Sobic004G212200 Sobic004G212200 Sobic003G338100--Sobic004G212200 Sobic001G082100 Sobic001G082100 Sobic003G338100--Sobic001G082100 Sobic001G294900 Sobic001G294900 Sobic003G338100--Sobic001G294900 Sobic003G338100--Sobic006G044600 Sobic001G402300 Sobic001G402300 Sobic003G338100--Sobic001G402300 Sobic010G193800 Sobic010G193800 Sobic003G338100--Sobic010G193800 Sobic008G153500 Sobic008G153500 Sobic003G338100--Sobic008G153500 Sobic009G232400 Sobic009G232400 Sobic003G338100--Sobic009G232400 Sobic002G394600--Sobic002G341800 Sobic002G394600--Sobic006G044600 Sobic002G014400 Sobic002G014400 Sobic002G394600--Sobic002G014400 Sobic001G251600 Sobic001G251600 Sobic002G394600--Sobic001G251600 Sobic002G394600--Sobic009G190300 Sobic004G194900 Sobic004G194900 Sobic002G394600--Sobic004G194900 Sobic002G394600--Sobic001G404100 Sobic007G177300 Sobic007G177300 Sobic002G394600--Sobic007G177300 Sobic004G310500 Sobic004G310500 Sobic002G394600--Sobic004G310500 Sobic004G326600 Sobic004G326600 Sobic001G091900--Sobic004G326600 Sobic003G160900 Sobic003G160900 Sobic001G091900--Sobic003G160900 Sobic001G091900--Sobic009G190300 Sobic006G056600 Sobic006G056600 Sobic001G091900--Sobic006G056600 Sobic001G091900--Sobic001G481700 Sobic009G211700 Sobic009G211700 Sobic001G091900--Sobic009G211700 Sobic001G091900--Sobic002G341800 Sobic002G143000 Sobic002G143000 Sobic001G091900--Sobic002G143000 Sobic001G091900--Sobic001G458700 Sobic001G404100--Sobic002G341800 Sobic001G404100--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic001G404100--Sobic001G502200 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G096100 Sobic001G096100 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic009G212300 Sobic009G212300 Sobic001G404100--Sobic009G212300 Sobic006G252200 Sobic006G252200 Sobic001G404100--Sobic006G252200 Sobic010G262433 Sobic010G262433 Sobic004G216400--Sobic010G262433 Sobic001G468600 Sobic001G468600 Sobic004G216400--Sobic001G468600 Sobic004G216400--Sobic002G341800 Sobic001G283200 Sobic001G283200 Sobic004G216400--Sobic001G283200 Sobic004G216400--Sobic004G310500 Sobic001G021300 Sobic001G021300 Sobic004G216400--Sobic001G021300 Sobic004G216400--Sobic009G190300 Sobic002G071000 Sobic002G071000 Sobic004G216400--Sobic002G071000 Sobic004G216400--Sobic001G082100
Octagon: transcription factors


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