Gene annotation
Transcriptome id Sobic.004G094200.1
Synonym Sb04g007760
Functional annotation elongation factor 1-gamma, putative, expressed
UniProt C5XY44
Pfam PF00043 PF02798 PF00647
Panther DB PTHR11260 PTHR11260:SF194
NCBI CDD KOG1627; Translation elongation factor EF-1 gamma
KEGG Orthology K03233; elongation factor 1-gamma
Gene Ontology GO:0005515; protein binding GO:0006414translational elongation GO:0003746translation elongation factor activity


Orthologs (automatic annotation)
TAIR AT1G09640 : Translation elongation factor EF1B, gamma chain
RAP-DB (Rice) LOC_Os02g12800.1 : elongation factor 1-gamma, putative, expressed
MaizeGDB (Corn) Zm00025a034557 , Zm00025a042298 , Zm00025a020183 , Zm00025a051148
Brachypodium KQJ94058 , KQK17900 , KQK17901
Barley HORVU7Hr1G087050.7 , HORVU7Hr1G087050.6 , HORVU7Hr1G087050.5 , HORVU7Hr1G087050.4 , HORVU7Hr1G087050.3 , HORVU7Hr1G087050.2 , HORVU7Hr1G087050.1 , HORVU7Hr1G087050.8
Wheat TraesCS7D02G360200 , TraesCS7D02G360200 , TraesCS6A02G186000 , TraesCS7A02G362900 , TraesCS7B02G266300 , TraesCS7B02G266300
Populus PNT42953 , PNT42957 , PNT42954


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cDNA sequences
Sobic.004G094200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G103900 ribosomal protein L51, putative, expressed K17424: large subunit ribosomal protein L43
2 Sobic.001G021300 elongation factor, putative, expressed K03234: elongation factor 2
3 Sobic.001G468600 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
4 Sobic.004G216400 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
5 Sobic.003G063300 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
6 Sobic.001G219300 lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
7 Sobic.007G071300 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
8 Sobic.007G100425 - -
9 Sobic.002G332900 RNA recognition motif containing protein, putative, expressed -
10 Sobic.010G262433 - -
11 Sobic.009G257600 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
12 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
13 Sobic.002G393500 expressed protein -
14 Sobic.004G310500 ybaK/prolyl-tRNA synthetase family protein, putative, expressed -
15 Sobic.009G190300 Brix domain containing protein, putative, expressed K14847: ribosome production factor 2
16 Sobic.004G085200 protein of unknown function domain containing protein, expressed -
17 Sobic.006G002201 - -
18 Sobic.001G021400 elongation factor, putative, expressed K03234: elongation factor 2
19 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
20 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase


Gene co-expression network
sample Sobic004G094200 Sobic004G094200 Sobic010G103900 Sobic010G103900 Sobic004G094200--Sobic010G103900 Sobic001G021300 Sobic001G021300 Sobic004G094200--Sobic001G021300 Sobic001G468600 Sobic001G468600 Sobic004G094200--Sobic001G468600 Sobic004G216400 Sobic004G216400 Sobic004G094200--Sobic004G216400 Sobic003G063300 Sobic003G063300 Sobic004G094200--Sobic003G063300 Sobic001G219300 Sobic001G219300 Sobic004G094200--Sobic001G219300 Sobic007G071300 Sobic007G071300 Sobic004G094200--Sobic007G071300 Sobic007G100425 Sobic007G100425 Sobic004G094200--Sobic007G100425 Sobic002G332900 Sobic002G332900 Sobic004G094200--Sobic002G332900 Sobic004G085200 Sobic004G085200 Sobic010G103900--Sobic004G085200 Sobic002G371100 Sobic002G371100 Sobic010G103900--Sobic002G371100 Sobic001G481700 Sobic001G481700 Sobic010G103900--Sobic001G481700 Sobic001G005900 Sobic001G005900 Sobic010G103900--Sobic001G005900 Sobic002G364100 Sobic002G364100 Sobic010G103900--Sobic002G364100 Sobic009G022400 Sobic009G022400 Sobic010G103900--Sobic009G022400 Sobic002G255100 Sobic002G255100 Sobic010G103900--Sobic002G255100 Sobic002G364500 Sobic002G364500 Sobic010G103900--Sobic002G364500 Sobic003G196800 Sobic003G196800 Sobic010G103900--Sobic003G196800 Sobic002G393500 Sobic002G393500 Sobic001G021300--Sobic002G393500 Sobic001G021300--Sobic004G216400 Sobic005G003800 Sobic005G003800 Sobic001G021300--Sobic005G003800 Sobic001G021300--Sobic007G100425 Sobic001G021300--Sobic003G063300 Sobic001G021300--Sobic004G094200 Sobic001G110400 Sobic001G110400 Sobic001G021300--Sobic001G110400 Sobic006G252200 Sobic006G252200 Sobic001G021300--Sobic006G252200 Sobic009G257600 Sobic009G257600 Sobic001G021300--Sobic009G257600 Sobic001G434200 Sobic001G434200 Sobic001G468600--Sobic001G434200 Sobic006G002201 Sobic006G002201 Sobic001G468600--Sobic006G002201 Sobic001G468600--Sobic004G216400 Sobic001G468600--Sobic002G332900 Sobic004G124100 Sobic004G124100 Sobic001G468600--Sobic004G124100 Sobic010G262433 Sobic010G262433 Sobic001G468600--Sobic010G262433 Sobic009G072000 Sobic009G072000 Sobic001G468600--Sobic009G072000 Sobic009G249800 Sobic009G249800 Sobic001G468600--Sobic009G249800 Sobic006G157000 Sobic006G157000 Sobic001G468600--Sobic006G157000 Sobic004G216400--Sobic010G262433 Sobic004G216400--Sobic001G468600 Sobic002G341800 Sobic002G341800 Sobic004G216400--Sobic002G341800 Sobic001G283200 Sobic001G283200 Sobic004G216400--Sobic001G283200 Sobic004G310500 Sobic004G310500 Sobic004G216400--Sobic004G310500 Sobic004G216400--Sobic001G021300 Sobic009G190300 Sobic009G190300 Sobic004G216400--Sobic009G190300 Sobic002G071000 Sobic002G071000 Sobic004G216400--Sobic002G071000 Sobic001G082100 Sobic001G082100 Sobic004G216400--Sobic001G082100 Sobic001G074300 Sobic001G074300 Sobic003G063300--Sobic001G074300 Sobic004G216800 Sobic004G216800 Sobic003G063300--Sobic004G216800 Sobic003G063300--Sobic007G100425 Sobic003G063300--Sobic002G364500 Sobic003G063300--Sobic001G005900 Sobic003G063300--Sobic002G364100 Sobic004G225500 Sobic004G225500 Sobic003G063300--Sobic004G225500 Sobic001G018800 Sobic001G018800 Sobic003G063300--Sobic001G018800 Sobic003G063300--Sobic002G371100 Sobic002G111200 Sobic002G111200 Sobic001G219300--Sobic002G111200 Sobic004G080100 Sobic004G080100 Sobic001G219300--Sobic004G080100 Sobic003G055700 Sobic003G055700 Sobic001G219300--Sobic003G055700 Sobic010G049100 Sobic010G049100 Sobic001G219300--Sobic010G049100 Sobic001G219300--Sobic009G257600 Sobic001G014800 Sobic001G014800 Sobic001G219300--Sobic001G014800 Sobic009G005900 Sobic009G005900 Sobic001G219300--Sobic009G005900 Sobic006G244700 Sobic006G244700 Sobic001G219300--Sobic006G244700 Sobic008G032600 Sobic008G032600 Sobic001G219300--Sobic008G032600 Sobic007G061400 Sobic007G061400 Sobic007G071300--Sobic007G061400 Sobic006G212100 Sobic006G212100 Sobic007G071300--Sobic006G212100 Sobic001G294900 Sobic001G294900 Sobic007G071300--Sobic001G294900 Sobic007G071300--Sobic010G103900 Sobic001G491100 Sobic001G491100 Sobic007G071300--Sobic001G491100 Sobic007G071300--Sobic001G005900 Sobic007G071300--Sobic006G002201 Sobic003G349300 Sobic003G349300 Sobic007G071300--Sobic003G349300 Sobic007G168600 Sobic007G168600 Sobic007G071300--Sobic007G168600 Sobic007G100425--Sobic004G216800 Sobic004G224900 Sobic004G224900 Sobic007G100425--Sobic004G224900 Sobic008G132400 Sobic008G132400 Sobic007G100425--Sobic008G132400 Sobic007G100425--Sobic001G074300 Sobic001G048832 Sobic001G048832 Sobic007G100425--Sobic001G048832 Sobic007G100425--Sobic001G005900 Sobic004G138800 Sobic004G138800 Sobic007G100425--Sobic004G138800 Sobic007G100425--Sobic003G063300 Sobic007G100425--Sobic002G364500 Sobic002G332900--Sobic001G468600 Sobic004G250500 Sobic004G250500 Sobic002G332900--Sobic004G250500 Sobic002G332900--Sobic004G216400 Sobic003G239800 Sobic003G239800 Sobic002G332900--Sobic003G239800 Sobic002G332900--Sobic004G310500 Sobic002G419100 Sobic002G419100 Sobic002G332900--Sobic002G419100 Sobic004G194900 Sobic004G194900 Sobic002G332900--Sobic004G194900 Sobic002G394600 Sobic002G394600 Sobic002G332900--Sobic002G394600 Sobic002G332900--Sobic010G262433
Octagon: transcription factors


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