Gene annotation
Transcriptome id Sobic.007G071300.1
Synonym Sb07g005640
Functional annotation ribosomal protein L27, putative, expressed
UniProt C5YIF1
Pfam PF01016
Panther DB PTHR15893 PTHR15893:SF2
NCBI CDD KOG4600; Mitochondrial ribosomal protein MRP7 (L2)
KEGG Orthology K02899; RP-L27, MRPL27, large subunit ribosomal protein L27
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G15220 : Ribosomal protein L27 family protein
RAP-DB (Rice) LOC_Os08g31228.1 : ribosomal protein L27, putative, expressed
MaizeGDB (Corn) Zm00025a029943
Brachypodium -
Barley HORVU2Hr1G066830.1 , HORVU2Hr1G066830.2 , HORVU2Hr1G066830.5 , HORVU2Hr1G066830.4 , HORVU2Hr1G066830.7 , HORVU2Hr1G066830.6 , HORVU2Hr1G066830.8
Wheat TraesCS3A02G168800 , TraesCS3B02G197800 , TraesCS2A02G273900 , TraesCS2D02G272900 , TraesCS3D02G173100 , TraesCS2B02G291600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
2 Sobic.006G212100 expressed protein -
3 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
4 Sobic.010G103900 ribosomal protein L51, putative, expressed K17424: large subunit ribosomal protein L43
5 Sobic.001G491100 structural constituent of ribosome, putative, expressed K02911: RP-L32, MRPL32, large subunit ribosomal protein L32
6 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
7 Sobic.006G002201 - -
8 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
9 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
10 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
11 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
12 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
13 Sobic.004G289800 expressed protein -
14 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
15 Sobic.004G130100 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
16 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
17 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
18 Sobic.004G352500 vacuolar ATP synthase subunit F, putative, expressed K02151: ATPeV1F, V-type H+-transporting ATPase subunit F
19 Sobic.001G468600 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
20 Sobic.002G371100 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e


Gene co-expression network
sample Sobic007G071300 Sobic007G071300 Sobic007G061400 Sobic007G061400 Sobic007G071300--Sobic007G061400 Sobic006G212100 Sobic006G212100 Sobic007G071300--Sobic006G212100 Sobic001G294900 Sobic001G294900 Sobic007G071300--Sobic001G294900 Sobic010G103900 Sobic010G103900 Sobic007G071300--Sobic010G103900 Sobic001G491100 Sobic001G491100 Sobic007G071300--Sobic001G491100 Sobic001G005900 Sobic001G005900 Sobic007G071300--Sobic001G005900 Sobic006G002201 Sobic006G002201 Sobic007G071300--Sobic006G002201 Sobic003G349300 Sobic003G349300 Sobic007G071300--Sobic003G349300 Sobic007G168600 Sobic007G168600 Sobic007G071300--Sobic007G168600 Sobic007G061400--Sobic006G002201 Sobic005G111900 Sobic005G111900 Sobic007G061400--Sobic005G111900 Sobic010G205300 Sobic010G205300 Sobic007G061400--Sobic010G205300 Sobic003G196800 Sobic003G196800 Sobic007G061400--Sobic003G196800 Sobic001G502200 Sobic001G502200 Sobic007G061400--Sobic001G502200 Sobic007G061400--Sobic001G294900 Sobic001G458700 Sobic001G458700 Sobic007G061400--Sobic001G458700 Sobic010G057900 Sobic010G057900 Sobic007G061400--Sobic010G057900 Sobic003G124800 Sobic003G124800 Sobic007G061400--Sobic003G124800 Sobic001G054200 Sobic001G054200 Sobic006G212100--Sobic001G054200 Sobic009G198500 Sobic009G198500 Sobic006G212100--Sobic009G198500 Sobic001G314500 Sobic001G314500 Sobic006G212100--Sobic001G314500 Sobic006G263900 Sobic006G263900 Sobic006G212100--Sobic006G263900 Sobic002G400000 Sobic002G400000 Sobic006G212100--Sobic002G400000 Sobic006G212100--Sobic007G168600 Sobic009G174900 Sobic009G174900 Sobic006G212100--Sobic009G174900 Sobic010G083700 Sobic010G083700 Sobic006G212100--Sobic010G083700 Sobic006G212100--Sobic001G005900 Sobic008G137600 Sobic008G137600 Sobic001G294900--Sobic008G137600 Sobic001G294900--Sobic003G349300 Sobic006G225300 Sobic006G225300 Sobic001G294900--Sobic006G225300 Sobic001G439600 Sobic001G439600 Sobic001G294900--Sobic001G439600 Sobic006G183000 Sobic006G183000 Sobic001G294900--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic001G294900--Sobic002G129000 Sobic001G294900--Sobic001G458700 Sobic009G135600 Sobic009G135600 Sobic001G294900--Sobic009G135600 Sobic006G109700 Sobic006G109700 Sobic001G294900--Sobic006G109700 Sobic004G085200 Sobic004G085200 Sobic010G103900--Sobic004G085200 Sobic002G371100 Sobic002G371100 Sobic010G103900--Sobic002G371100 Sobic001G481700 Sobic001G481700 Sobic010G103900--Sobic001G481700 Sobic010G103900--Sobic001G005900 Sobic002G364100 Sobic002G364100 Sobic010G103900--Sobic002G364100 Sobic009G022400 Sobic009G022400 Sobic010G103900--Sobic009G022400 Sobic002G255100 Sobic002G255100 Sobic010G103900--Sobic002G255100 Sobic002G364500 Sobic002G364500 Sobic010G103900--Sobic002G364500 Sobic010G103900--Sobic003G196800 Sobic001G491100--Sobic009G174900 Sobic007G019100 Sobic007G019100 Sobic001G491100--Sobic007G019100 Sobic001G491100--Sobic001G481700 Sobic001G025600 Sobic001G025600 Sobic001G491100--Sobic001G025600 Sobic001G491100--Sobic003G196800 Sobic002G078400 Sobic002G078400 Sobic001G491100--Sobic002G078400 Sobic009G004400 Sobic009G004400 Sobic001G491100--Sobic009G004400 Sobic001G491100--Sobic001G502200 Sobic001G491100--Sobic008G137600 Sobic001G005900--Sobic009G198500 Sobic004G327300 Sobic004G327300 Sobic001G005900--Sobic004G327300 Sobic004G300900 Sobic004G300900 Sobic001G005900--Sobic004G300900 Sobic001G048832 Sobic001G048832 Sobic001G005900--Sobic001G048832 Sobic001G005900--Sobic002G078400 Sobic001G005900--Sobic001G502200 Sobic004G130900 Sobic004G130900 Sobic001G005900--Sobic004G130900 Sobic007G096700 Sobic007G096700 Sobic001G005900--Sobic007G096700 Sobic001G501200 Sobic001G501200 Sobic001G005900--Sobic001G501200 Sobic003G103400 Sobic003G103400 Sobic006G002201--Sobic003G103400 Sobic006G002201--Sobic007G061400 Sobic005G105500 Sobic005G105500 Sobic006G002201--Sobic005G105500 Sobic004G291400 Sobic004G291400 Sobic006G002201--Sobic004G291400 Sobic006G002201--Sobic005G111900 Sobic006G002201--Sobic003G196800 Sobic001G468600 Sobic001G468600 Sobic006G002201--Sobic001G468600 Sobic006G002201--Sobic001G458700 Sobic004G124100 Sobic004G124100 Sobic006G002201--Sobic004G124100 Sobic003G349300--Sobic010G205300 Sobic003G349300--Sobic001G294900 Sobic003G349300--Sobic009G135600 Sobic001G388200 Sobic001G388200 Sobic003G349300--Sobic001G388200 Sobic004G181900 Sobic004G181900 Sobic003G349300--Sobic004G181900 Sobic009G192000 Sobic009G192000 Sobic003G349300--Sobic009G192000 Sobic001G283200 Sobic001G283200 Sobic003G349300--Sobic001G283200 Sobic003G261400 Sobic003G261400 Sobic003G349300--Sobic003G261400 Sobic003G349300--Sobic007G168600 Sobic007G168600--Sobic002G400000 Sobic007G168600--Sobic009G198500 Sobic004G086600 Sobic004G086600 Sobic007G168600--Sobic004G086600 Sobic007G168600--Sobic001G502200 Sobic003G077900 Sobic003G077900 Sobic007G168600--Sobic003G077900 Sobic007G168600--Sobic010G205300 Sobic007G168600--Sobic003G124800 Sobic001G461900 Sobic001G461900 Sobic007G168600--Sobic001G461900 Sobic007G168600--Sobic001G314500
Octagon: transcription factors


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