Gene annotation
Transcriptome id Sobic.004G352500.1
Synonym Sb04g037920
Functional annotation vacuolar ATP synthase subunit F, putative, expressed
UniProt C5XWL8
Pfam PF01990
Panther DB PTHR13861 PTHR13861:SF4
NCBI CDD KOG3432; Vacuolar H+-ATPase V1 sector, subunit F
KEGG Orthology K02151; ATPeV1F, V-type H+-transporting ATPase subunit F
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G02620 : vacuolar ATPase subunit F family protein
RAP-DB (Rice) LOC_Os02g57854.1 : vacuolar ATP synthase subunit F, putative, expressed
MaizeGDB (Corn) Zm00025a049098 , Zm00025a015391
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G352500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G001200 expressed protein -
2 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
3 Sobic.003G370500 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
4 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
5 Sobic.007G071300 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
6 Sobic.004G297700 ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
7 Sobic.002G355300 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
8 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
9 Sobic.001G391200 ABC transporter, ATP-binding protein, putative, expressed K12608: CCR4-NOT complex subunit CAF16
10 Sobic.003G185500 expressed protein -
11 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
12 Sobic.003G336000 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed K15633: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
13 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
14 Sobic.008G087900 expressed protein -
15 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
16 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
17 Sobic.002G306900 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
18 Sobic.006G276700 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
19 Sobic.002G410700 vacuolar ATP synthase subunit F, putative, expressed K02151: ATPeV1F, V-type H+-transporting ATPase subunit F
20 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I


Gene co-expression network
sample Sobic004G352500 Sobic004G352500 Sobic003G001200 Sobic003G001200 Sobic004G352500--Sobic003G001200 Sobic005G111900 Sobic005G111900 Sobic004G352500--Sobic005G111900 Sobic003G370500 Sobic003G370500 Sobic004G352500--Sobic003G370500 Sobic007G061400 Sobic007G061400 Sobic004G352500--Sobic007G061400 Sobic007G071300 Sobic007G071300 Sobic004G352500--Sobic007G071300 Sobic004G297700 Sobic004G297700 Sobic004G352500--Sobic004G297700 Sobic002G355300 Sobic002G355300 Sobic004G352500--Sobic002G355300 Sobic001G282500 Sobic001G282500 Sobic004G352500--Sobic001G282500 Sobic001G391200 Sobic001G391200 Sobic004G352500--Sobic001G391200 Sobic003G001200--Sobic004G352500 Sobic001G131400 Sobic001G131400 Sobic003G001200--Sobic001G131400 Sobic003G001200--Sobic007G071300 Sobic001G388600 Sobic001G388600 Sobic003G001200--Sobic001G388600 Sobic002G073800 Sobic002G073800 Sobic003G001200--Sobic002G073800 Sobic001G353600 Sobic001G353600 Sobic003G001200--Sobic001G353600 Sobic002G306900 Sobic002G306900 Sobic003G001200--Sobic002G306900 Sobic002G371100 Sobic002G371100 Sobic003G001200--Sobic002G371100 Sobic002G363100 Sobic002G363100 Sobic003G001200--Sobic002G363100 Sobic005G111900--Sobic007G061400 Sobic001G014800 Sobic001G014800 Sobic005G111900--Sobic001G014800 Sobic006G029000 Sobic006G029000 Sobic005G111900--Sobic006G029000 Sobic006G002201 Sobic006G002201 Sobic005G111900--Sobic006G002201 Sobic004G194900 Sobic004G194900 Sobic005G111900--Sobic004G194900 Sobic003G349300 Sobic003G349300 Sobic005G111900--Sobic003G349300 Sobic010G205300 Sobic010G205300 Sobic005G111900--Sobic010G205300 Sobic001G473800 Sobic001G473800 Sobic005G111900--Sobic001G473800 Sobic009G149500 Sobic009G149500 Sobic005G111900--Sobic009G149500 Sobic002G047500 Sobic002G047500 Sobic003G370500--Sobic002G047500 Sobic004G054100 Sobic004G054100 Sobic003G370500--Sobic004G054100 Sobic003G370500--Sobic004G352500 Sobic007G005300 Sobic007G005300 Sobic003G370500--Sobic007G005300 Sobic006G274800 Sobic006G274800 Sobic003G370500--Sobic006G274800 Sobic008G048300 Sobic008G048300 Sobic003G370500--Sobic008G048300 Sobic002G376600 Sobic002G376600 Sobic003G370500--Sobic002G376600 Sobic002G181600 Sobic002G181600 Sobic003G370500--Sobic002G181600 Sobic001G031100 Sobic001G031100 Sobic003G370500--Sobic001G031100 Sobic007G061400--Sobic006G002201 Sobic007G061400--Sobic005G111900 Sobic007G061400--Sobic010G205300 Sobic003G196800 Sobic003G196800 Sobic007G061400--Sobic003G196800 Sobic001G502200 Sobic001G502200 Sobic007G061400--Sobic001G502200 Sobic001G294900 Sobic001G294900 Sobic007G061400--Sobic001G294900 Sobic001G458700 Sobic001G458700 Sobic007G061400--Sobic001G458700 Sobic010G057900 Sobic010G057900 Sobic007G061400--Sobic010G057900 Sobic003G124800 Sobic003G124800 Sobic007G061400--Sobic003G124800 Sobic007G071300--Sobic007G061400 Sobic006G212100 Sobic006G212100 Sobic007G071300--Sobic006G212100 Sobic007G071300--Sobic001G294900 Sobic010G103900 Sobic010G103900 Sobic007G071300--Sobic010G103900 Sobic001G491100 Sobic001G491100 Sobic007G071300--Sobic001G491100 Sobic001G005900 Sobic001G005900 Sobic007G071300--Sobic001G005900 Sobic007G071300--Sobic006G002201 Sobic007G071300--Sobic003G349300 Sobic007G168600 Sobic007G168600 Sobic007G071300--Sobic007G168600 Sobic007G171500 Sobic007G171500 Sobic004G297700--Sobic007G171500 Sobic010G032600 Sobic010G032600 Sobic004G297700--Sobic010G032600 Sobic006G276700 Sobic006G276700 Sobic004G297700--Sobic006G276700 Sobic002G186300 Sobic002G186300 Sobic004G297700--Sobic002G186300 Sobic004G244000 Sobic004G244000 Sobic004G297700--Sobic004G244000 Sobic007G023400 Sobic007G023400 Sobic004G297700--Sobic007G023400 Sobic001G457000 Sobic001G457000 Sobic004G297700--Sobic001G457000 Sobic004G202100 Sobic004G202100 Sobic004G297700--Sobic004G202100 Sobic003G034900 Sobic003G034900 Sobic004G297700--Sobic003G034900 Sobic003G386000 Sobic003G386000 Sobic002G355300--Sobic003G386000 Sobic001G040800 Sobic001G040800 Sobic002G355300--Sobic001G040800 Sobic004G055200 Sobic004G055200 Sobic002G355300--Sobic004G055200 Sobic006G232200 Sobic006G232200 Sobic002G355300--Sobic006G232200 Sobic003G155400 Sobic003G155400 Sobic002G355300--Sobic003G155400 Sobic002G222900 Sobic002G222900 Sobic002G355300--Sobic002G222900 Sobic001G459200 Sobic001G459200 Sobic002G355300--Sobic001G459200 Sobic007G019100 Sobic007G019100 Sobic002G355300--Sobic007G019100 Sobic004G170400 Sobic004G170400 Sobic002G355300--Sobic004G170400 Sobic002G309700 Sobic002G309700 Sobic001G282500--Sobic002G309700 Sobic009G215300 Sobic009G215300 Sobic001G282500--Sobic009G215300 Sobic004G260200 Sobic004G260200 Sobic001G282500--Sobic004G260200 Sobic002G356400 Sobic002G356400 Sobic001G282500--Sobic002G356400 Sobic002G395000 Sobic002G395000 Sobic001G282500--Sobic002G395000 Sobic002G308300 Sobic002G308300 Sobic001G282500--Sobic002G308300 Sobic001G181500 Sobic001G181500 Sobic001G282500--Sobic001G181500 Sobic003G135600 Sobic003G135600 Sobic001G282500--Sobic003G135600 Sobic001G350600 Sobic001G350600 Sobic001G282500--Sobic001G350600 Sobic001G391200--Sobic007G171500 Sobic001G391200--Sobic004G297700 Sobic003G380300 Sobic003G380300 Sobic001G391200--Sobic003G380300 Sobic004G256700 Sobic004G256700 Sobic001G391200--Sobic004G256700 Sobic001G391200--Sobic010G032600 Sobic001G387200 Sobic001G387200 Sobic001G391200--Sobic001G387200 Sobic001G518500 Sobic001G518500 Sobic001G391200--Sobic001G518500 Sobic003G129900 Sobic003G129900 Sobic001G391200--Sobic003G129900 Sobic003G308400 Sobic003G308400 Sobic001G391200--Sobic003G308400
Octagon: transcription factors


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