Gene annotation
Transcriptome id Sobic.003G001200.1
Synonym Sb03g000290
Functional annotation expressed protein
UniProt C5XJH2
Pfam PF07047
Panther DB PTHR12499 PTHR12499:SF3
NCBI CDD KOG3335; Predicted coiled-coil protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G28510 : Optic atrophy 3 protein (OPA3)
RAP-DB (Rice) LOC_Os01g14020.1 : expressed protein
MaizeGDB (Corn) Zm00025a022767
Brachypodium KQK03538
Barley HORVU3Hr1G033350.3 , HORVU3Hr1G033350.2 , HORVU3Hr1G033350.1 , HORVU3Hr1G033350.4
Wheat TraesCS3B02G196000 , TraesCS3D02G171400 , TraesCS3A02G170600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G352500 vacuolar ATP synthase subunit F, putative, expressed K02151: ATPeV1F, V-type H+-transporting ATPase subunit F
2 Sobic.001G131400 thioesterase family protein, putative, expressed -
3 Sobic.007G071300 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
4 Sobic.001G388600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
5 Sobic.002G073800 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
6 Sobic.001G353600 expressed protein -
7 Sobic.002G306900 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
8 Sobic.002G371100 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
9 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
10 Sobic.001G428200 expressed protein -
11 Sobic.002G355300 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
12 Sobic.009G001400 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
13 Sobic.008G189300 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
14 Sobic.004G167100 rar1, putative, expressed K13458: disease resistance protein
15 Sobic.004G236300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@shikimate kinase, putative, expressed K00891: aroK, shikimate kinase
16 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
17 Sobic.003G336000 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed K15633: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
18 Sobic.003G370500 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
19 Sobic.004G017800 ubiquitin-conjugating enzyme 28(PubMedID : 26465154)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
20 Sobic.010G216200 OsGrx_C4 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3


Gene co-expression network
sample Sobic003G001200 Sobic003G001200 Sobic004G352500 Sobic004G352500 Sobic003G001200--Sobic004G352500 Sobic001G131400 Sobic001G131400 Sobic003G001200--Sobic001G131400 Sobic007G071300 Sobic007G071300 Sobic003G001200--Sobic007G071300 Sobic001G388600 Sobic001G388600 Sobic003G001200--Sobic001G388600 Sobic002G073800 Sobic002G073800 Sobic003G001200--Sobic002G073800 Sobic001G353600 Sobic001G353600 Sobic003G001200--Sobic001G353600 Sobic002G306900 Sobic002G306900 Sobic003G001200--Sobic002G306900 Sobic002G371100 Sobic002G371100 Sobic003G001200--Sobic002G371100 Sobic002G363100 Sobic002G363100 Sobic003G001200--Sobic002G363100 Sobic004G352500--Sobic003G001200 Sobic005G111900 Sobic005G111900 Sobic004G352500--Sobic005G111900 Sobic003G370500 Sobic003G370500 Sobic004G352500--Sobic003G370500 Sobic007G061400 Sobic007G061400 Sobic004G352500--Sobic007G061400 Sobic004G352500--Sobic007G071300 Sobic004G297700 Sobic004G297700 Sobic004G352500--Sobic004G297700 Sobic002G355300 Sobic002G355300 Sobic004G352500--Sobic002G355300 Sobic001G282500 Sobic001G282500 Sobic004G352500--Sobic001G282500 Sobic001G391200 Sobic001G391200 Sobic004G352500--Sobic001G391200 Sobic006G180200 Sobic006G180200 Sobic001G131400--Sobic006G180200 Sobic001G131400--Sobic001G353600 Sobic010G178200 Sobic010G178200 Sobic001G131400--Sobic010G178200 Sobic009G038100 Sobic009G038100 Sobic001G131400--Sobic009G038100 Sobic001G074300 Sobic001G074300 Sobic001G131400--Sobic001G074300 Sobic009G176000 Sobic009G176000 Sobic001G131400--Sobic009G176000 Sobic004G151400 Sobic004G151400 Sobic001G131400--Sobic004G151400 Sobic008G189300 Sobic008G189300 Sobic001G131400--Sobic008G189300 Sobic010G135000 Sobic010G135000 Sobic001G131400--Sobic010G135000 Sobic007G071300--Sobic007G061400 Sobic006G212100 Sobic006G212100 Sobic007G071300--Sobic006G212100 Sobic001G294900 Sobic001G294900 Sobic007G071300--Sobic001G294900 Sobic010G103900 Sobic010G103900 Sobic007G071300--Sobic010G103900 Sobic001G491100 Sobic001G491100 Sobic007G071300--Sobic001G491100 Sobic001G005900 Sobic001G005900 Sobic007G071300--Sobic001G005900 Sobic006G002201 Sobic006G002201 Sobic007G071300--Sobic006G002201 Sobic003G349300 Sobic003G349300 Sobic007G071300--Sobic003G349300 Sobic007G168600 Sobic007G168600 Sobic007G071300--Sobic007G168600 Sobic001G478000 Sobic001G478000 Sobic001G388600--Sobic001G478000 Sobic004G130100 Sobic004G130100 Sobic001G388600--Sobic004G130100 Sobic004G327300 Sobic004G327300 Sobic001G388600--Sobic004G327300 Sobic001G388600--Sobic002G363100 Sobic001G388600--Sobic002G371100 Sobic001G388600--Sobic001G005900 Sobic004G099900 Sobic004G099900 Sobic001G388600--Sobic004G099900 Sobic007G152400 Sobic007G152400 Sobic001G388600--Sobic007G152400 Sobic003G216500 Sobic003G216500 Sobic001G388600--Sobic003G216500 Sobic010G018400 Sobic010G018400 Sobic002G073800--Sobic010G018400 Sobic009G212200 Sobic009G212200 Sobic002G073800--Sobic009G212200 Sobic008G127500 Sobic008G127500 Sobic002G073800--Sobic008G127500 Sobic009G062000 Sobic009G062000 Sobic002G073800--Sobic009G062000 Sobic001G095632 Sobic001G095632 Sobic002G073800--Sobic001G095632 Sobic001G304400 Sobic001G304400 Sobic002G073800--Sobic001G304400 Sobic002G073800--Sobic009G176000 Sobic002G356400 Sobic002G356400 Sobic002G073800--Sobic002G356400 Sobic001G034700 Sobic001G034700 Sobic002G073800--Sobic001G034700 Sobic010G041600 Sobic010G041600 Sobic001G353600--Sobic010G041600 Sobic001G353600--Sobic001G034700 Sobic001G087900 Sobic001G087900 Sobic001G353600--Sobic001G087900 Sobic004G225500 Sobic004G225500 Sobic001G353600--Sobic004G225500 Sobic010G121300 Sobic010G121300 Sobic001G353600--Sobic010G121300 Sobic004G351500 Sobic004G351500 Sobic001G353600--Sobic004G351500 Sobic001G353600--Sobic001G131400 Sobic004G308400 Sobic004G308400 Sobic001G353600--Sobic004G308400 Sobic001G536500 Sobic001G536500 Sobic001G353600--Sobic001G536500 Sobic001G040800 Sobic001G040800 Sobic002G306900--Sobic001G040800 Sobic002G306900--Sobic002G363100 Sobic009G217900 Sobic009G217900 Sobic002G306900--Sobic009G217900 Sobic002G306900--Sobic002G355300 Sobic002G306900--Sobic001G388600 Sobic001G357300 Sobic001G357300 Sobic002G306900--Sobic001G357300 Sobic002G306900--Sobic004G130100 Sobic009G001400 Sobic009G001400 Sobic002G306900--Sobic009G001400 Sobic002G306900--Sobic003G216500 Sobic001G018800 Sobic001G018800 Sobic002G371100--Sobic001G018800 Sobic008G073300 Sobic008G073300 Sobic002G371100--Sobic008G073300 Sobic001G025600 Sobic001G025600 Sobic002G371100--Sobic001G025600 Sobic002G255100 Sobic002G255100 Sobic002G371100--Sobic002G255100 Sobic002G049300 Sobic002G049300 Sobic002G371100--Sobic002G049300 Sobic004G103700 Sobic004G103700 Sobic002G371100--Sobic004G103700 Sobic003G308000 Sobic003G308000 Sobic002G371100--Sobic003G308000 Sobic004G002350 Sobic004G002350 Sobic002G371100--Sobic004G002350 Sobic009G227400 Sobic009G227400 Sobic002G371100--Sobic009G227400 Sobic009G240900 Sobic009G240900 Sobic002G363100--Sobic009G240900 Sobic002G363100--Sobic001G040800 Sobic002G363100--Sobic009G001400 Sobic002G363100--Sobic001G357300 Sobic007G114200 Sobic007G114200 Sobic002G363100--Sobic007G114200 Sobic002G363100--Sobic009G217900 Sobic002G363100--Sobic001G005900 Sobic002G363100--Sobic004G130100 Sobic002G363100--Sobic004G327300
Octagon: transcription factors


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