Gene annotation
Transcriptome id Sobic.004G017800.2,Sobic.004G017800.1
Synonym UBC28, Sb04g001680
Functional annotation ubiquitin-conjugating enzyme 28 (PubMedID : 26465154)
ubiquitin-conjugating enzyme, putative, expressed
UniProt A0A194YMA1 , A0A194YM88
Pfam PF00179
Panther DB PTHR24068
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K06689; UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G64230 : ubiquitin-conjugating enzyme 28
RAP-DB (Rice) LOC_Os02g02830.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a034910 , Zm00025a009384
Brachypodium KQK18220 , KQJ85185 , KQJ92967 , KQJ89732
Barley HORVU7Hr1G080800.1 , HORVU7Hr1G080800.2 , HORVU2Hr1G118240.8 , HORVU2Hr1G118240.4 , HORVU2Hr1G118240.5 , HORVU2Hr1G118240.6 , HORVU2Hr1G118240.1 , HORVU2Hr1G118240.2 , HORVU2Hr1G118240.3 , HORVU5Hr1G053810.4 , HORVU5Hr1G053810.1
Wheat TraesCS6B02G095200 , TraesCS5D02G181400 , TraesCS6A02G071100 , TraesCS7D02G335800 , TraesCS7A02G343800 , TraesCS7A02G343800 , TraesCS5A02G177100 , TraesCS7B02G239300 , TraesCS5B02G174300 , TraesCS6D02G069000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G442900 expressed protein -
2 Sobic.004G209900 non-receptor tyrosine kinase spore lysis A, putative, expressed -
3 Sobic.002G204200 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
4 Sobic.003G117900 protein kinase, putative, expressed -
5 Sobic.010G185500 ethanol tolerance protein GEKO1, putative, expressed K09716: dtdA, D-aminoacyl-tRNA deacylase
6 Sobic.010G042100 transcription elongation factor 1, putative, expressed -
7 Sobic.007G216100 expressed protein -
8 Sobic.001G220400 SNF7 domain containing protein, putative, expressed K12192: charged multivesicular body protein 2B
9 Sobic.002G199900 expressed protein -
10 Sobic.003G206900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
11 Sobic.004G167400 expressed protein -
12 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
13 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
14 Sobic.002G291200 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00963: UGP2, galU, UTP--glucose-1-phosphate uridylyltransferase
15 Sobic.002G264400 metallo-beta-lactamase family protein, putative, expressed K01069: gloB, gloC, hydroxyacylglutathione hydrolase
16 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
17 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
18 Sobic.001G329100 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
19 Sobic.001G106700 expressed protein -
20 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase


Gene co-expression network
sample Sobic004G017800 Sobic004G017800 Sobic003G442900 Sobic003G442900 Sobic004G017800--Sobic003G442900 Sobic004G209900 Sobic004G209900 Sobic004G017800--Sobic004G209900 Sobic002G204200 Sobic002G204200 Sobic004G017800--Sobic002G204200 Sobic003G117900 Sobic003G117900 Sobic004G017800--Sobic003G117900 Sobic010G185500 Sobic010G185500 Sobic004G017800--Sobic010G185500 Sobic010G042100 Sobic010G042100 Sobic004G017800--Sobic010G042100 Sobic007G216100 Sobic007G216100 Sobic004G017800--Sobic007G216100 Sobic001G220400 Sobic001G220400 Sobic004G017800--Sobic001G220400 Sobic002G199900 Sobic002G199900 Sobic004G017800--Sobic002G199900 Sobic003G442900--Sobic004G017800 Sobic003G442900--Sobic010G185500 Sobic003G206900 Sobic003G206900 Sobic003G442900--Sobic003G206900 Sobic010G071900 Sobic010G071900 Sobic003G442900--Sobic010G071900 Sobic009G185800 Sobic009G185800 Sobic003G442900--Sobic009G185800 Sobic010G072000 Sobic010G072000 Sobic003G442900--Sobic010G072000 Sobic008G033600 Sobic008G033600 Sobic003G442900--Sobic008G033600 Sobic010G019900 Sobic010G019900 Sobic003G442900--Sobic010G019900 Sobic010G178200 Sobic010G178200 Sobic003G442900--Sobic010G178200 Sobic008G189300 Sobic008G189300 Sobic004G209900--Sobic008G189300 Sobic010G135000 Sobic010G135000 Sobic004G209900--Sobic010G135000 Sobic010G037300 Sobic010G037300 Sobic004G209900--Sobic010G037300 Sobic006G180200 Sobic006G180200 Sobic004G209900--Sobic006G180200 Sobic005G228000 Sobic005G228000 Sobic004G209900--Sobic005G228000 Sobic003G130800 Sobic003G130800 Sobic004G209900--Sobic003G130800 Sobic002G212200 Sobic002G212200 Sobic004G209900--Sobic002G212200 Sobic005G095900 Sobic005G095900 Sobic004G209900--Sobic005G095900 Sobic004G209900--Sobic001G220400 Sobic008G089900 Sobic008G089900 Sobic002G204200--Sobic008G089900 Sobic002G204200--Sobic007G216100 Sobic002G204200--Sobic004G017800 Sobic002G226400 Sobic002G226400 Sobic002G204200--Sobic002G226400 Sobic001G406100 Sobic001G406100 Sobic002G204200--Sobic001G406100 Sobic010G230500 Sobic010G230500 Sobic002G204200--Sobic010G230500 Sobic001G070000 Sobic001G070000 Sobic002G204200--Sobic001G070000 Sobic004G103000 Sobic004G103000 Sobic002G204200--Sobic004G103000 Sobic003G295900 Sobic003G295900 Sobic002G204200--Sobic003G295900 Sobic003G117900--Sobic010G042100 Sobic003G370900 Sobic003G370900 Sobic003G117900--Sobic003G370900 Sobic001G106700 Sobic001G106700 Sobic003G117900--Sobic001G106700 Sobic001G329100 Sobic001G329100 Sobic003G117900--Sobic001G329100 Sobic001G007200 Sobic001G007200 Sobic003G117900--Sobic001G007200 Sobic004G167400 Sobic004G167400 Sobic003G117900--Sobic004G167400 Sobic004G067100 Sobic004G067100 Sobic003G117900--Sobic004G067100 Sobic002G045300 Sobic002G045300 Sobic003G117900--Sobic002G045300 Sobic010G253800 Sobic010G253800 Sobic003G117900--Sobic010G253800 Sobic010G185500--Sobic008G033600 Sobic010G185500--Sobic010G071900 Sobic002G264400 Sobic002G264400 Sobic010G185500--Sobic002G264400 Sobic010G185500--Sobic003G206900 Sobic010G185500--Sobic008G189300 Sobic006G264300 Sobic006G264300 Sobic010G185500--Sobic006G264300 Sobic010G185500--Sobic010G019900 Sobic010G243200 Sobic010G243200 Sobic010G185500--Sobic010G243200 Sobic003G228000 Sobic003G228000 Sobic010G185500--Sobic003G228000 Sobic010G042100--Sobic002G045300 Sobic001G433400 Sobic001G433400 Sobic010G042100--Sobic001G433400 Sobic010G042100--Sobic003G117900 Sobic009G135600 Sobic009G135600 Sobic010G042100--Sobic009G135600 Sobic002G385900 Sobic002G385900 Sobic010G042100--Sobic002G385900 Sobic003G367451 Sobic003G367451 Sobic010G042100--Sobic003G367451 Sobic003G253000 Sobic003G253000 Sobic010G042100--Sobic003G253000 Sobic004G020000 Sobic004G020000 Sobic010G042100--Sobic004G020000 Sobic001G461900 Sobic001G461900 Sobic010G042100--Sobic001G461900 Sobic010G000900 Sobic010G000900 Sobic007G216100--Sobic010G000900 Sobic002G247500 Sobic002G247500 Sobic007G216100--Sobic002G247500 Sobic007G216100--Sobic003G117900 Sobic007G216100--Sobic003G295900 Sobic007G216100--Sobic001G106700 Sobic007G216100--Sobic004G167400 Sobic001G388200 Sobic001G388200 Sobic007G216100--Sobic001G388200 Sobic002G375300 Sobic002G375300 Sobic007G216100--Sobic002G375300 Sobic007G216100--Sobic003G370900 Sobic010G188100 Sobic010G188100 Sobic001G220400--Sobic010G188100 Sobic009G219900 Sobic009G219900 Sobic001G220400--Sobic009G219900 Sobic010G101500 Sobic010G101500 Sobic001G220400--Sobic010G101500 Sobic003G077900 Sobic003G077900 Sobic001G220400--Sobic003G077900 Sobic001G220400--Sobic003G367451 Sobic003G220600 Sobic003G220600 Sobic001G220400--Sobic003G220600 Sobic009G001400 Sobic009G001400 Sobic001G220400--Sobic009G001400 Sobic006G163000 Sobic006G163000 Sobic001G220400--Sobic006G163000 Sobic002G122700 Sobic002G122700 Sobic001G220400--Sobic002G122700 Sobic004G130800 Sobic004G130800 Sobic002G199900--Sobic004G130800 Sobic003G075500 Sobic003G075500 Sobic002G199900--Sobic003G075500 Sobic002G199900--Sobic003G117900 Sobic002G199900--Sobic004G067100 Sobic002G199900--Sobic004G017800 Sobic002G199900--Sobic010G072000 Sobic002G199900--Sobic010G185500 Sobic004G225500 Sobic004G225500 Sobic002G199900--Sobic004G225500 Sobic010G195701 Sobic010G195701 Sobic002G199900--Sobic010G195701
Octagon: transcription factors


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