Gene annotation
Transcriptome id Sobic.004G167100.2,Sobic.004G167100.1
Synonym ATRAR1, PBS2, RAR1, RPR2
Functional annotation rar1, putative, expressed
UniProt A0A194YQ38 , A0A1Z5RMU7
Pfam PF04968
Panther DB PTHR12621
NCBI CDD -
KEGG Orthology K13458; disease resistance protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G51700 : protein binding;zinc ion binding
RAP-DB (Rice) LOC_Os02g33180.1 : rar1, putative, expressed
MaizeGDB (Corn) Zm00025a020550
Brachypodium KQK23648 , KQJ99748 , KQJ99747 , PNT68767 , PNT68766
Barley HORVU2Hr1G097800.4 , HORVU2Hr1G097800.5 , HORVU2Hr1G097800.6 , HORVU2Hr1G097800.7 , HORVU2Hr1G097800.1 , HORVU2Hr1G097800.8 , HORVU2Hr1G097800.9
Wheat TraesCS2B02G433400 , TraesCS2B02G433400 , TraesCS2D02G411600 , TraesCS2D02G411600
Populus -


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cDNA sequences
Sobic.004G167100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G071300 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
2 Sobic.010G216200 OsGrx_C4 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
3 Sobic.004G085200 protein of unknown function domain containing protein, expressed -
4 Sobic.001G044000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DNA-binding storekeeper protein-related, putative, expressed -
5 Sobic.010G195701 - -
6 Sobic.004G175700 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.004G225500 bolA, putative, expressed K05527: BolA family transcriptional regulator, general stress-responsive regulator
8 Sobic.010G103900 ribosomal protein L51, putative, expressed K17424: large subunit ribosomal protein L43
9 Sobic.001G428100 S-RNase-binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
10 Sobic.001G117400 DNA-directed RNA polymerase I subunit RPA12, putative, expressed K03000: RPA12, DNA-directed RNA polymerase I subunit RPA12
11 Sobic.004G150200 expressed protein -
12 Sobic.004G198500 Brix domain containing protein, putative, expressed K14820: BRX1, ribosome biogenesis protein BRX1
13 Sobic.008G189300 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
14 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
15 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
16 Sobic.007G068000 postsynaptic protein CRIPT, putative, expressed -
17 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
18 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3
19 Sobic.003G063300 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
20 Sobic.006G281200 csAtPR5, putative, expressed -


Gene co-expression network
sample Sobic004G167100 Sobic004G167100 Sobic007G071300 Sobic007G071300 Sobic004G167100--Sobic007G071300 Sobic010G216200 Sobic010G216200 Sobic004G167100--Sobic010G216200 Sobic004G085200 Sobic004G085200 Sobic004G167100--Sobic004G085200 Sobic001G044000 Sobic001G044000 Sobic004G167100--Sobic001G044000 Sobic010G195701 Sobic010G195701 Sobic004G167100--Sobic010G195701 Sobic004G175700 Sobic004G175700 Sobic004G167100--Sobic004G175700 Sobic004G225500 Sobic004G225500 Sobic004G167100--Sobic004G225500 Sobic010G103900 Sobic010G103900 Sobic004G167100--Sobic010G103900 Sobic001G428100 Sobic001G428100 Sobic004G167100--Sobic001G428100 Sobic007G061400 Sobic007G061400 Sobic007G071300--Sobic007G061400 Sobic006G212100 Sobic006G212100 Sobic007G071300--Sobic006G212100 Sobic001G294900 Sobic001G294900 Sobic007G071300--Sobic001G294900 Sobic007G071300--Sobic010G103900 Sobic001G491100 Sobic001G491100 Sobic007G071300--Sobic001G491100 Sobic001G005900 Sobic001G005900 Sobic007G071300--Sobic001G005900 Sobic006G002201 Sobic006G002201 Sobic007G071300--Sobic006G002201 Sobic003G349300 Sobic003G349300 Sobic007G071300--Sobic003G349300 Sobic007G168600 Sobic007G168600 Sobic007G071300--Sobic007G168600 Sobic010G216200--Sobic010G195701 Sobic007G068000 Sobic007G068000 Sobic010G216200--Sobic007G068000 Sobic003G277000 Sobic003G277000 Sobic010G216200--Sobic003G277000 Sobic007G091000 Sobic007G091000 Sobic010G216200--Sobic007G091000 Sobic007G096700 Sobic007G096700 Sobic010G216200--Sobic007G096700 Sobic008G189300 Sobic008G189300 Sobic010G216200--Sobic008G189300 Sobic001G501200 Sobic001G501200 Sobic010G216200--Sobic001G501200 Sobic003G117300 Sobic003G117300 Sobic010G216200--Sobic003G117300 Sobic004G217600 Sobic004G217600 Sobic010G216200--Sobic004G217600 Sobic002G364100 Sobic002G364100 Sobic004G085200--Sobic002G364100 Sobic004G085200--Sobic010G103900 Sobic003G025200 Sobic003G025200 Sobic004G085200--Sobic003G025200 Sobic002G364500 Sobic002G364500 Sobic004G085200--Sobic002G364500 Sobic009G022400 Sobic009G022400 Sobic004G085200--Sobic009G022400 Sobic002G049300 Sobic002G049300 Sobic004G085200--Sobic002G049300 Sobic004G198500 Sobic004G198500 Sobic004G085200--Sobic004G198500 Sobic006G260400 Sobic006G260400 Sobic004G085200--Sobic006G260400 Sobic004G322200 Sobic004G322200 Sobic004G085200--Sobic004G322200 Sobic001G044000--Sobic004G167100 Sobic009G111600 Sobic009G111600 Sobic001G044000--Sobic009G111600 Sobic006G213800 Sobic006G213800 Sobic001G044000--Sobic006G213800 Sobic009G099500 Sobic009G099500 Sobic001G044000--Sobic009G099500 Sobic001G044000--Sobic010G195701 Sobic004G067200 Sobic004G067200 Sobic001G044000--Sobic004G067200 Sobic002G187300 Sobic002G187300 Sobic001G044000--Sobic002G187300 Sobic001G393800 Sobic001G393800 Sobic001G044000--Sobic001G393800 Sobic004G067100 Sobic004G067100 Sobic001G044000--Sobic004G067100 Sobic010G195701--Sobic010G216200 Sobic006G244700 Sobic006G244700 Sobic010G195701--Sobic006G244700 Sobic001G428200 Sobic001G428200 Sobic010G195701--Sobic001G428200 Sobic010G195701--Sobic004G067100 Sobic010G012800 Sobic010G012800 Sobic010G195701--Sobic010G012800 Sobic003G077900 Sobic003G077900 Sobic010G195701--Sobic003G077900 Sobic001G364600 Sobic001G364600 Sobic010G195701--Sobic001G364600 Sobic004G060600 Sobic004G060600 Sobic010G195701--Sobic004G060600 Sobic010G277100 Sobic010G277100 Sobic010G195701--Sobic010G277100 Sobic001G404100 Sobic001G404100 Sobic004G175700--Sobic001G404100 Sobic003G367900 Sobic003G367900 Sobic004G175700--Sobic003G367900 Sobic008G137600 Sobic008G137600 Sobic004G175700--Sobic008G137600 Sobic002G279000 Sobic002G279000 Sobic004G175700--Sobic002G279000 Sobic007G152400 Sobic007G152400 Sobic004G175700--Sobic007G152400 Sobic001G532100 Sobic001G532100 Sobic004G175700--Sobic001G532100 Sobic006G079900 Sobic006G079900 Sobic004G175700--Sobic006G079900 Sobic001G402300 Sobic001G402300 Sobic004G175700--Sobic001G402300 Sobic001G285300 Sobic001G285300 Sobic004G175700--Sobic001G285300 Sobic004G225500--Sobic008G189300 Sobic002G155500 Sobic002G155500 Sobic004G225500--Sobic002G155500 Sobic004G272800 Sobic004G272800 Sobic004G225500--Sobic004G272800 Sobic004G300900 Sobic004G300900 Sobic004G225500--Sobic004G300900 Sobic001G048832 Sobic001G048832 Sobic004G225500--Sobic001G048832 Sobic001G340500 Sobic001G340500 Sobic004G225500--Sobic001G340500 Sobic002G153500 Sobic002G153500 Sobic004G225500--Sobic002G153500 Sobic010G154700 Sobic010G154700 Sobic004G225500--Sobic010G154700 Sobic010G121300 Sobic010G121300 Sobic004G225500--Sobic010G121300 Sobic010G103900--Sobic004G085200 Sobic002G371100 Sobic002G371100 Sobic010G103900--Sobic002G371100 Sobic001G481700 Sobic001G481700 Sobic010G103900--Sobic001G481700 Sobic010G103900--Sobic001G005900 Sobic010G103900--Sobic002G364100 Sobic010G103900--Sobic009G022400 Sobic002G255100 Sobic002G255100 Sobic010G103900--Sobic002G255100 Sobic010G103900--Sobic002G364500 Sobic003G196800 Sobic003G196800 Sobic010G103900--Sobic003G196800 Sobic006G281200 Sobic006G281200 Sobic001G428100--Sobic006G281200 Sobic001G502200 Sobic001G502200 Sobic001G428100--Sobic001G502200 Sobic001G428100--Sobic001G501200 Sobic001G428100--Sobic004G060600 Sobic009G198500 Sobic009G198500 Sobic001G428100--Sobic009G198500 Sobic009G004600 Sobic009G004600 Sobic001G428100--Sobic009G004600 Sobic003G440800 Sobic003G440800 Sobic001G428100--Sobic003G440800 Sobic001G315500 Sobic001G315500 Sobic001G428100--Sobic001G315500 Sobic001G428100--Sobic003G117300
Octagon: transcription factors


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