Gene annotation
Transcriptome id Sobic.001G044000.1
Synonym Sb01g004050
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
DNA-binding storekeeper protein-related, putative, expressed
UniProt C5WW26
Pfam PF03798
Panther DB PTHR31766 PTHR31766:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G14280 : DNA-binding storekeeper protein-related
RAP-DB (Rice) LOC_Os05g23700.1 : DNA-binding storekeeper protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a016499 , Zm00025a055204 , Zm00025a008699
Brachypodium KQK06837
Barley HORVU1Hr1G030710.1 , HORVU1Hr1G030710.2
Wheat TraesCS1D02G132000
Populus -


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cDNA sequences
Sobic.001G044000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G167100 rar1, putative, expressed K13458: disease resistance protein
2 Sobic.009G111600 expressed protein -
3 Sobic.006G213800 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
4 Sobic.009G099500 expressed protein -
5 Sobic.010G195701 - -
6 Sobic.004G067200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
7 Sobic.002G187300 calmodulin-binding protein, putative, expressed -
8 Sobic.001G393800 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
9 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
10 Sobic.003G047100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K12261: 2-hydroxyacyl-CoA lyase 1
11 Sobic.004G150200 expressed protein -
12 Sobic.001G110400 - -
13 Sobic.001G364500 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
14 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
15 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
16 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
17 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
18 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
19 Sobic.004G301400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K08331: autophagy-related protein 13
20 Sobic.001G058100 thioredoxin, putative, expressed -


Gene co-expression network
sample Sobic001G044000 Sobic001G044000 Sobic004G167100 Sobic004G167100 Sobic001G044000--Sobic004G167100 Sobic009G111600 Sobic009G111600 Sobic001G044000--Sobic009G111600 Sobic006G213800 Sobic006G213800 Sobic001G044000--Sobic006G213800 Sobic009G099500 Sobic009G099500 Sobic001G044000--Sobic009G099500 Sobic010G195701 Sobic010G195701 Sobic001G044000--Sobic010G195701 Sobic004G067200 Sobic004G067200 Sobic001G044000--Sobic004G067200 Sobic002G187300 Sobic002G187300 Sobic001G044000--Sobic002G187300 Sobic001G393800 Sobic001G393800 Sobic001G044000--Sobic001G393800 Sobic004G067100 Sobic004G067100 Sobic001G044000--Sobic004G067100 Sobic007G071300 Sobic007G071300 Sobic004G167100--Sobic007G071300 Sobic010G216200 Sobic010G216200 Sobic004G167100--Sobic010G216200 Sobic004G085200 Sobic004G085200 Sobic004G167100--Sobic004G085200 Sobic004G167100--Sobic001G044000 Sobic004G167100--Sobic010G195701 Sobic004G175700 Sobic004G175700 Sobic004G167100--Sobic004G175700 Sobic004G225500 Sobic004G225500 Sobic004G167100--Sobic004G225500 Sobic010G103900 Sobic010G103900 Sobic004G167100--Sobic010G103900 Sobic001G428100 Sobic001G428100 Sobic004G167100--Sobic001G428100 Sobic004G284500 Sobic004G284500 Sobic009G111600--Sobic004G284500 Sobic001G403700 Sobic001G403700 Sobic009G111600--Sobic001G403700 Sobic004G276100 Sobic004G276100 Sobic009G111600--Sobic004G276100 Sobic008G179500 Sobic008G179500 Sobic009G111600--Sobic008G179500 Sobic002G083266 Sobic002G083266 Sobic009G111600--Sobic002G083266 Sobic003G367451 Sobic003G367451 Sobic009G111600--Sobic003G367451 Sobic010G213400 Sobic010G213400 Sobic009G111600--Sobic010G213400 Sobic004G272800 Sobic004G272800 Sobic009G111600--Sobic004G272800 Sobic001G399100 Sobic001G399100 Sobic009G111600--Sobic001G399100 Sobic003G362500 Sobic003G362500 Sobic006G213800--Sobic003G362500 Sobic006G281800 Sobic006G281800 Sobic006G213800--Sobic006G281800 Sobic005G111900 Sobic005G111900 Sobic006G213800--Sobic005G111900 Sobic001G014800 Sobic001G014800 Sobic006G213800--Sobic001G014800 Sobic009G225000 Sobic009G225000 Sobic006G213800--Sobic009G225000 Sobic004G206700 Sobic004G206700 Sobic006G213800--Sobic004G206700 Sobic002G268800 Sobic002G268800 Sobic006G213800--Sobic002G268800 Sobic004G121300 Sobic004G121300 Sobic006G213800--Sobic004G121300 Sobic009G149500 Sobic009G149500 Sobic006G213800--Sobic009G149500 Sobic009G099500--Sobic001G393800 Sobic005G150800 Sobic005G150800 Sobic009G099500--Sobic005G150800 Sobic009G099500--Sobic004G067100 Sobic003G077900 Sobic003G077900 Sobic009G099500--Sobic003G077900 Sobic004G234900 Sobic004G234900 Sobic009G099500--Sobic004G234900 Sobic001G427200 Sobic001G427200 Sobic009G099500--Sobic001G427200 Sobic007G007000 Sobic007G007000 Sobic009G099500--Sobic007G007000 Sobic002G251700 Sobic002G251700 Sobic009G099500--Sobic002G251700 Sobic001G057800 Sobic001G057800 Sobic009G099500--Sobic001G057800 Sobic010G195701--Sobic010G216200 Sobic006G244700 Sobic006G244700 Sobic010G195701--Sobic006G244700 Sobic001G428200 Sobic001G428200 Sobic010G195701--Sobic001G428200 Sobic010G195701--Sobic004G067100 Sobic010G012800 Sobic010G012800 Sobic010G195701--Sobic010G012800 Sobic010G195701--Sobic003G077900 Sobic001G364600 Sobic001G364600 Sobic010G195701--Sobic001G364600 Sobic004G060600 Sobic004G060600 Sobic010G195701--Sobic004G060600 Sobic010G277100 Sobic010G277100 Sobic010G195701--Sobic010G277100 Sobic001G157200 Sobic001G157200 Sobic004G067200--Sobic001G157200 Sobic003G333501 Sobic003G333501 Sobic004G067200--Sobic003G333501 Sobic004G067200--Sobic009G099500 Sobic002G130700 Sobic002G130700 Sobic004G067200--Sobic002G130700 Sobic002G241400 Sobic002G241400 Sobic004G067200--Sobic002G241400 Sobic009G210600 Sobic009G210600 Sobic004G067200--Sobic009G210600 Sobic009G038401 Sobic009G038401 Sobic004G067200--Sobic009G038401 Sobic004G067200--Sobic001G427200 Sobic002G222800 Sobic002G222800 Sobic004G067200--Sobic002G222800 Sobic003G047100 Sobic003G047100 Sobic002G187300--Sobic003G047100 Sobic006G002700 Sobic006G002700 Sobic002G187300--Sobic006G002700 Sobic009G088100 Sobic009G088100 Sobic002G187300--Sobic009G088100 Sobic004G348900 Sobic004G348900 Sobic002G187300--Sobic004G348900 Sobic001G109300 Sobic001G109300 Sobic002G187300--Sobic001G109300 Sobic006G252200 Sobic006G252200 Sobic002G187300--Sobic006G252200 Sobic010G080200 Sobic010G080200 Sobic002G187300--Sobic010G080200 Sobic004G130900 Sobic004G130900 Sobic002G187300--Sobic004G130900 Sobic004G173600 Sobic004G173600 Sobic002G187300--Sobic004G173600 Sobic008G107500 Sobic008G107500 Sobic001G393800--Sobic008G107500 Sobic001G393800--Sobic005G150800 Sobic001G010400 Sobic001G010400 Sobic001G393800--Sobic001G010400 Sobic003G333400 Sobic003G333400 Sobic001G393800--Sobic003G333400 Sobic004G167400 Sobic004G167400 Sobic001G393800--Sobic004G167400 Sobic001G393800--Sobic001G057800 Sobic002G175500 Sobic002G175500 Sobic001G393800--Sobic002G175500 Sobic001G393800--Sobic009G099500 Sobic001G023200 Sobic001G023200 Sobic001G393800--Sobic001G023200 Sobic004G080100 Sobic004G080100 Sobic004G067100--Sobic004G080100 Sobic003G246700 Sobic003G246700 Sobic004G067100--Sobic003G246700 Sobic002G166900 Sobic002G166900 Sobic004G067100--Sobic002G166900 Sobic003G117900 Sobic003G117900 Sobic004G067100--Sobic003G117900 Sobic001G508100 Sobic001G508100 Sobic004G067100--Sobic001G508100 Sobic004G067100--Sobic004G167400 Sobic002G226900 Sobic002G226900 Sobic004G067100--Sobic002G226900 Sobic006G090000 Sobic006G090000 Sobic004G067100--Sobic006G090000 Sobic004G067100--Sobic003G077900
Octagon: transcription factors


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