Gene annotation
Transcriptome id Sobic.001G021400.2,Sobic.001G021400.1
Synonym LOS1
Functional annotation elongation factor, putative, expressed
UniProt -
Pfam PF14492 PF03144 PF00679 PF03764 PF00009
Panther DB PTHR23115 PTHR23115:SF131
NCBI CDD -
KEGG Orthology K03234; elongation factor 2
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G56070 : Ribosomal protein S5/Elongation factor G/III/V family protein
RAP-DB (Rice) LOC_Os04g02820.1 : elongation factor, putative, expressed
MaizeGDB (Corn) Zm00025a040074 , Zm00025a008947 , Zm00025a052101 , Zm00025a008954 , Zm00025a008952
Brachypodium KQJ99646 , KQJ99645 , KQK08953 , KQJ99594 , KQJ99595 , PNT72487
Barley HORVU7Hr1G106150.4 , HORVU7Hr1G106150.5 , HORVU5Hr1G116580.10 , HORVU5Hr1G116580.11 , HORVU5Hr1G116580.12 , HORVU5Hr1G116710.9 , HORVU5Hr1G116710.8 , HORVU7Hr1G106150.2 , HORVU7Hr1G106150.3 , HORVU7Hr1G106150.1 , HORVU5Hr1G116710.3 , HORVU5Hr1G116710.2 , HORVU5Hr1G116710.1 , HORVU5Hr1G116710.7 , HORVU5Hr1G116710.6 , HORVU5Hr1G116710.5 , HORVU5Hr1G116710.4 , HORVU5Hr1G116580.6 , HORVU5Hr1G116580.7 , HORVU5Hr1G116580.4 , HORVU5Hr1G116580.5 , HORVU5Hr1G116580.2 , HORVU5Hr1G116580.3 , HORVU5Hr1G116580.1 , HORVU5Hr1G116580.8 , HORVU3Hr1G057880.1 , HORVU3Hr1G057880.3 , HORVU3Hr1G057880.2 , HORVU3Hr1G057890.2 , HORVU3Hr1G057890.3 , HORVU3Hr1G057890.1 , HORVU5Hr1G116580.9
Wheat TraesCS3A02G232300 , TraesCS4A02G363800 , TraesCS7A02G461100 , TraesCS3B02G261500 , TraesCS5D02G509600 , TraesCS5D02G509800 , TraesCS4A02G363700 , TraesCS2A02G234500 , TraesCS7A02G288600 , TraesCS5B02G509500 , TraesCS3D02G220900 , TraesCS1D02G023700 , TraesCS5D02G509700 , TraesCS6A02G189500 , TraesCS5B02G509600 , TraesCS5B02G509700 , TraesCS7D02G449300 , TraesCS7B02G362600
Populus PNT35884 , PNT27456 , PNT27457 , PNT27458 , PNT27459


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G216400 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
2 Sobic.010G262433 - -
3 Sobic.001G468600 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
4 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
5 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
6 Sobic.001G021300 elongation factor, putative, expressed K03234: elongation factor 2
7 Sobic.004G310500 ybaK/prolyl-tRNA synthetase family protein, putative, expressed -
8 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
9 Sobic.003G372000 proton-dependent oligopeptide transport, putative, expressed -
10 Sobic.009G257600 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
11 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
12 Sobic.001G219300 lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
13 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase
14 Sobic.002G393500 expressed protein -
15 Sobic.002G246700 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
16 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
17 Sobic.003G055700 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
18 Sobic.004G181900 expressed protein -
19 Sobic.004G094200 elongation factor 1-gamma, putative, expressed K03233: elongation factor 1-gamma
20 Sobic.007G136100 uncharacterized protein family UPF0016 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G021400 Sobic001G021400 Sobic004G216400 Sobic004G216400 Sobic001G021400--Sobic004G216400 Sobic010G262433 Sobic010G262433 Sobic001G021400--Sobic010G262433 Sobic001G468600 Sobic001G468600 Sobic001G021400--Sobic001G468600 Sobic002G341800 Sobic002G341800 Sobic001G021400--Sobic002G341800 Sobic001G283200 Sobic001G283200 Sobic001G021400--Sobic001G283200 Sobic001G021300 Sobic001G021300 Sobic001G021400--Sobic001G021300 Sobic004G310500 Sobic004G310500 Sobic001G021400--Sobic004G310500 Sobic001G458700 Sobic001G458700 Sobic001G021400--Sobic001G458700 Sobic003G372000 Sobic003G372000 Sobic001G021400--Sobic003G372000 Sobic004G216400--Sobic010G262433 Sobic004G216400--Sobic001G468600 Sobic004G216400--Sobic002G341800 Sobic004G216400--Sobic001G283200 Sobic004G216400--Sobic004G310500 Sobic004G216400--Sobic001G021300 Sobic009G190300 Sobic009G190300 Sobic004G216400--Sobic009G190300 Sobic002G071000 Sobic002G071000 Sobic004G216400--Sobic002G071000 Sobic001G082100 Sobic001G082100 Sobic004G216400--Sobic001G082100 Sobic010G262433--Sobic004G216400 Sobic010G262433--Sobic001G468600 Sobic010G262433--Sobic002G071000 Sobic010G262433--Sobic001G021400 Sobic009G257600 Sobic009G257600 Sobic010G262433--Sobic009G257600 Sobic006G002201 Sobic006G002201 Sobic010G262433--Sobic006G002201 Sobic010G262433--Sobic004G310500 Sobic002G332900 Sobic002G332900 Sobic010G262433--Sobic002G332900 Sobic001G219300 Sobic001G219300 Sobic010G262433--Sobic001G219300 Sobic001G434200 Sobic001G434200 Sobic001G468600--Sobic001G434200 Sobic001G468600--Sobic006G002201 Sobic001G468600--Sobic004G216400 Sobic001G468600--Sobic002G332900 Sobic004G124100 Sobic004G124100 Sobic001G468600--Sobic004G124100 Sobic001G468600--Sobic010G262433 Sobic009G072000 Sobic009G072000 Sobic001G468600--Sobic009G072000 Sobic009G249800 Sobic009G249800 Sobic001G468600--Sobic009G249800 Sobic006G157000 Sobic006G157000 Sobic001G468600--Sobic006G157000 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic002G341800--Sobic001G481700 Sobic007G176200 Sobic007G176200 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic001G283200--Sobic001G458700 Sobic003G261400 Sobic003G261400 Sobic001G283200--Sobic003G261400 Sobic006G252200 Sobic006G252200 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic004G348900 Sobic004G348900 Sobic001G283200--Sobic004G348900 Sobic004G181900 Sobic004G181900 Sobic001G283200--Sobic004G181900 Sobic003G349300 Sobic003G349300 Sobic001G283200--Sobic003G349300 Sobic001G283200--Sobic007G176200 Sobic004G082900 Sobic004G082900 Sobic001G283200--Sobic004G082900 Sobic002G393500 Sobic002G393500 Sobic001G021300--Sobic002G393500 Sobic001G021300--Sobic004G216400 Sobic005G003800 Sobic005G003800 Sobic001G021300--Sobic005G003800 Sobic007G100425 Sobic007G100425 Sobic001G021300--Sobic007G100425 Sobic003G063300 Sobic003G063300 Sobic001G021300--Sobic003G063300 Sobic004G094200 Sobic004G094200 Sobic001G021300--Sobic004G094200 Sobic001G110400 Sobic001G110400 Sobic001G021300--Sobic001G110400 Sobic001G021300--Sobic006G252200 Sobic001G021300--Sobic009G257600 Sobic004G194900 Sobic004G194900 Sobic004G310500--Sobic004G194900 Sobic009G075800 Sobic009G075800 Sobic004G310500--Sobic009G075800 Sobic004G310500--Sobic006G044600 Sobic004G310500--Sobic001G283200 Sobic004G310500--Sobic009G257600 Sobic008G156700 Sobic008G156700 Sobic004G310500--Sobic008G156700 Sobic001G512300 Sobic001G512300 Sobic004G310500--Sobic001G512300 Sobic004G310500--Sobic002G394600 Sobic009G222500 Sobic009G222500 Sobic004G310500--Sobic009G222500 Sobic001G458700--Sobic007G176200 Sobic001G458700--Sobic006G252200 Sobic001G010700 Sobic001G010700 Sobic001G458700--Sobic001G010700 Sobic001G458700--Sobic002G341800 Sobic004G224900 Sobic004G224900 Sobic001G458700--Sobic004G224900 Sobic003G330500 Sobic003G330500 Sobic001G458700--Sobic003G330500 Sobic001G458700--Sobic001G283200 Sobic001G502200 Sobic001G502200 Sobic001G458700--Sobic001G502200 Sobic001G458700--Sobic004G081800 Sobic001G085100 Sobic001G085100 Sobic003G372000--Sobic001G085100 Sobic005G044800 Sobic005G044800 Sobic003G372000--Sobic005G044800 Sobic003G012200 Sobic003G012200 Sobic003G372000--Sobic003G012200 Sobic003G372000--Sobic001G283200 Sobic009G123600 Sobic009G123600 Sobic003G372000--Sobic009G123600 Sobic004G358600 Sobic004G358600 Sobic003G372000--Sobic004G358600 Sobic003G372000--Sobic003G261400 Sobic006G244700 Sobic006G244700 Sobic003G372000--Sobic006G244700 Sobic003G372000--Sobic009G075800
Octagon: transcription factors


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