Gene annotation
Transcriptome id Sobic.001G462500.1
Synonym ATNRAMP2, Sb01g043400, NRAMP2
Functional annotation natural resistance-associated macrophage protein, putative, expressed
UniProt C5WTQ4
Pfam PF01566
Panther DB PTHR11706 PTHR11706:SF51
NCBI CDD -
KEGG Orthology K12347; SLC11A1, natural resistance-associated macrophage protein 1
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT1G47240 : NRAMP metal ion transporter 2
RAP-DB (Rice) LOC_Os03g11010.1 : natural resistance-associated macrophage protein, putative, expressed
MaizeGDB (Corn) Zm00025a053124
Brachypodium KQK23004
Barley HORVU4Hr1G069320.2 , HORVU4Hr1G069320.3 , HORVU4Hr1G069320.1
Wheat TraesCS4B02G254300 , TraesCS4A02G050500 , TraesCS4D02G254100
Populus -


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cDNA sequences
Sobic.001G462500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
2 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
3 Sobic.003G322700 expressed protein -
4 Sobic.004G265800 uridine kinase, putative, expressed -
5 Sobic.001G016700 ion channel DMI1-like, chloroplast precursor, putative, expressed -
6 Sobic.007G004500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
7 Sobic.004G266400 monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
8 Sobic.006G087700 T-complex protein 11, putative, expressed -
9 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
10 Sobic.009G133500 expressed protein -
11 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
12 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
13 Sobic.006G064600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
14 Sobic.002G111000 peptidase, putative, expressed -
15 Sobic.004G329300 leucine aminopeptidase, chloroplast precursor, putative, expressed K01255: CARP, leucyl aminopeptidase
16 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
17 Sobic.003G320700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.002G249200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin efflux carrier component, putative, expressed -
19 Sobic.003G110000 TBC domain containing protein, expressed -
20 Sobic.006G043600 cysteine proteinase 1 precursor, putative, expressed K01373: cathepsin F


Gene co-expression network
sample Sobic001G462500 Sobic001G462500 Sobic002G266000 Sobic002G266000 Sobic001G462500--Sobic002G266000 Sobic006G204900 Sobic006G204900 Sobic001G462500--Sobic006G204900 Sobic003G322700 Sobic003G322700 Sobic001G462500--Sobic003G322700 Sobic004G265800 Sobic004G265800 Sobic001G462500--Sobic004G265800 Sobic001G016700 Sobic001G016700 Sobic001G462500--Sobic001G016700 Sobic007G004500 Sobic007G004500 Sobic001G462500--Sobic007G004500 Sobic004G266400 Sobic004G266400 Sobic001G462500--Sobic004G266400 Sobic006G087700 Sobic006G087700 Sobic001G462500--Sobic006G087700 Sobic001G207400 Sobic001G207400 Sobic001G462500--Sobic001G207400 Sobic002G266000--Sobic003G322700 Sobic001G282600 Sobic001G282600 Sobic002G266000--Sobic001G282600 Sobic006G104600 Sobic006G104600 Sobic002G266000--Sobic006G104600 Sobic002G249200 Sobic002G249200 Sobic002G266000--Sobic002G249200 Sobic004G261900 Sobic004G261900 Sobic002G266000--Sobic004G261900 Sobic002G266000--Sobic007G004500 Sobic004G034600 Sobic004G034600 Sobic002G266000--Sobic004G034600 Sobic005G149700 Sobic005G149700 Sobic002G266000--Sobic005G149700 Sobic004G225200 Sobic004G225200 Sobic002G266000--Sobic004G225200 Sobic006G204900--Sobic003G322700 Sobic006G204900--Sobic001G207400 Sobic004G269200 Sobic004G269200 Sobic006G204900--Sobic004G269200 Sobic009G133500 Sobic009G133500 Sobic006G204900--Sobic009G133500 Sobic010G001500 Sobic010G001500 Sobic006G204900--Sobic010G001500 Sobic004G068400 Sobic004G068400 Sobic006G204900--Sobic004G068400 Sobic004G355000 Sobic004G355000 Sobic006G204900--Sobic004G355000 Sobic003G320700 Sobic003G320700 Sobic006G204900--Sobic003G320700 Sobic002G430000 Sobic002G430000 Sobic006G204900--Sobic002G430000 Sobic003G322700--Sobic002G266000 Sobic003G322700--Sobic006G204900 Sobic003G322700--Sobic010G001500 Sobic003G322700--Sobic004G355000 Sobic003G322700--Sobic001G207400 Sobic003G355600 Sobic003G355600 Sobic003G322700--Sobic003G355600 Sobic003G322700--Sobic006G087700 Sobic006G199000 Sobic006G199000 Sobic003G322700--Sobic006G199000 Sobic003G322700--Sobic004G034600 Sobic004G131040 Sobic004G131040 Sobic004G265800--Sobic004G131040 Sobic004G265800--Sobic001G462500 Sobic004G265800--Sobic007G004500 Sobic003G200100 Sobic003G200100 Sobic004G265800--Sobic003G200100 Sobic004G065000 Sobic004G065000 Sobic004G265800--Sobic004G065000 Sobic001G351800 Sobic001G351800 Sobic004G265800--Sobic001G351800 Sobic004G265800--Sobic003G322700 Sobic004G265800--Sobic006G204900 Sobic004G265800--Sobic002G266000 Sobic001G016700--Sobic002G430000 Sobic002G111000 Sobic002G111000 Sobic001G016700--Sobic002G111000 Sobic001G016700--Sobic001G207400 Sobic010G139600 Sobic010G139600 Sobic001G016700--Sobic010G139600 Sobic003G110000 Sobic003G110000 Sobic001G016700--Sobic003G110000 Sobic001G390800 Sobic001G390800 Sobic001G016700--Sobic001G390800 Sobic001G016700--Sobic006G204900 Sobic001G016700--Sobic003G322700 Sobic003G086900 Sobic003G086900 Sobic001G016700--Sobic003G086900 Sobic007G004500--Sobic002G266000 Sobic007G004500--Sobic002G430000 Sobic001G085300 Sobic001G085300 Sobic007G004500--Sobic001G085300 Sobic007G004500--Sobic001G390800 Sobic007G004500--Sobic001G016700 Sobic007G004500--Sobic003G322700 Sobic007G004500--Sobic010G139600 Sobic007G004500--Sobic004G065000 Sobic007G004500--Sobic009G133500 Sobic006G043600 Sobic006G043600 Sobic004G266400--Sobic006G043600 Sobic004G266400--Sobic006G204900 Sobic002G159700 Sobic002G159700 Sobic004G266400--Sobic002G159700 Sobic004G266400--Sobic001G016700 Sobic010G224000 Sobic010G224000 Sobic004G266400--Sobic010G224000 Sobic004G266400--Sobic003G322700 Sobic004G266400--Sobic001G462500 Sobic001G121200 Sobic001G121200 Sobic004G266400--Sobic001G121200 Sobic004G266400--Sobic001G207400 Sobic007G075400 Sobic007G075400 Sobic006G087700--Sobic007G075400 Sobic006G087700--Sobic003G322700 Sobic006G233500 Sobic006G233500 Sobic006G087700--Sobic006G233500 Sobic006G087700--Sobic010G139600 Sobic003G301900 Sobic003G301900 Sobic006G087700--Sobic003G301900 Sobic006G087700--Sobic003G320700 Sobic006G087700--Sobic006G204900 Sobic002G128200 Sobic002G128200 Sobic006G087700--Sobic002G128200 Sobic006G087700--Sobic006G043600 Sobic001G207400--Sobic004G355000 Sobic001G207400--Sobic002G430000 Sobic002G270500 Sobic002G270500 Sobic001G207400--Sobic002G270500 Sobic001G207400--Sobic006G204900 Sobic005G157000 Sobic005G157000 Sobic001G207400--Sobic005G157000 Sobic001G207400--Sobic010G139600 Sobic001G207400--Sobic002G111000 Sobic001G207400--Sobic003G322700 Sobic001G050200 Sobic001G050200 Sobic001G207400--Sobic001G050200
Octagon: transcription factors


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