Gene annotation
Transcriptome id Sobic.004G296400.1
Synonym Sb04g033040, CAT9
Functional annotation amino acid permease, putative, expressed
UniProt A0A1Z5RQJ1
Pfam PF13906 PF13520
Panther DB PTHR11785 PTHR11785:SF407
NCBI CDD KOG1286; Amino acid transporters
KEGG Orthology K03294; basic amino acid/polyamine antiporter, APA family
Gene Ontology GO:0016020; membrane GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT1G05940 : cationic amino acid transporter 9
RAP-DB (Rice) LOC_Os02g43860.1 : amino acid permease, putative, expressed
MaizeGDB (Corn) Zm00025a020888
Brachypodium KQK00595
Barley HORVU0Hr1G023140.1 , HORVU0Hr1G023140.2 , HORVU6Hr1G062860.1
Wheat TraesCS6B02G280000 , TraesCS6A02G244400 , TraesCS6D02G226700
Populus -


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cDNA sequences
Sobic.004G296400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G233600 aspartyl aminopeptidase, putative, expressed K01267: aspartyl aminopeptidase
2 Sobic.003G169600 mitochondrial carrier protein, putative, expressed K15115: SLC25A32, solute carrier family 25 (mitochondrial folate transporter), member 32
3 Sobic.010G138000 FAD binding domain of DNA photolyase domain containing protein, expressed K12119: cryptochrome 2
4 Sobic.001G085300 phytosulfokine receptor precursor, putative, expressed -
5 Sobic.002G116900 expressed protein -
6 Sobic.002G166300 peroxin-3 family protein, putative, expressed K13336: peroxin-3
7 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
8 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
9 Sobic.004G040900 CPuORF14 - conserved peptide uORF-containing transcript, expressed K03262: translation initiation factor 5
10 Sobic.005G168600 NAD dependent epimerase/dehydratase family protein, putative, expressed K10046: GDP-D-mannose 3', 5'-epimerase
11 Sobic.008G033500 nucleolar GTPase, putative, expressed -
12 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.009G068500 expressed protein -
14 Sobic.007G004500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
15 Sobic.010G049100 acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
16 Sobic.003G355900 prenylated rab acceptor, putative, expressed -
17 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
18 Sobic.003G365300 sorting nexin 1, putative, expressed K17917: sorting nexin-1/2
19 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
20 Sobic.010G013200 CPuORF21 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase


Gene co-expression network
sample Sobic004G296400 Sobic004G296400 Sobic003G233600 Sobic003G233600 Sobic004G296400--Sobic003G233600 Sobic003G169600 Sobic003G169600 Sobic004G296400--Sobic003G169600 Sobic010G138000 Sobic010G138000 Sobic004G296400--Sobic010G138000 Sobic001G085300 Sobic001G085300 Sobic004G296400--Sobic001G085300 Sobic002G116900 Sobic002G116900 Sobic004G296400--Sobic002G116900 Sobic002G166300 Sobic002G166300 Sobic004G296400--Sobic002G166300 Sobic001G390800 Sobic001G390800 Sobic004G296400--Sobic001G390800 Sobic001G124200 Sobic001G124200 Sobic004G296400--Sobic001G124200 Sobic004G040900 Sobic004G040900 Sobic004G296400--Sobic004G040900 Sobic004G127700 Sobic004G127700 Sobic003G233600--Sobic004G127700 Sobic003G233600--Sobic002G166300 Sobic009G199200 Sobic009G199200 Sobic003G233600--Sobic009G199200 Sobic010G205800 Sobic010G205800 Sobic003G233600--Sobic010G205800 Sobic001G079200 Sobic001G079200 Sobic003G233600--Sobic001G079200 Sobic001G000200 Sobic001G000200 Sobic003G233600--Sobic001G000200 Sobic003G233600--Sobic004G296400 Sobic003G273600 Sobic003G273600 Sobic003G233600--Sobic003G273600 Sobic004G136300 Sobic004G136300 Sobic003G233600--Sobic004G136300 Sobic001G007000 Sobic001G007000 Sobic003G169600--Sobic001G007000 Sobic001G392300 Sobic001G392300 Sobic003G169600--Sobic001G392300 Sobic008G089100 Sobic008G089100 Sobic003G169600--Sobic008G089100 Sobic006G041600 Sobic006G041600 Sobic003G169600--Sobic006G041600 Sobic003G169600--Sobic010G205800 Sobic003G443100 Sobic003G443100 Sobic003G169600--Sobic003G443100 Sobic008G004600 Sobic008G004600 Sobic003G169600--Sobic008G004600 Sobic004G092500 Sobic004G092500 Sobic003G169600--Sobic004G092500 Sobic010G251000 Sobic010G251000 Sobic003G169600--Sobic010G251000 Sobic010G175400 Sobic010G175400 Sobic010G138000--Sobic010G175400 Sobic001G194200 Sobic001G194200 Sobic010G138000--Sobic001G194200 Sobic007G103100 Sobic007G103100 Sobic010G138000--Sobic007G103100 Sobic010G138000--Sobic004G136300 Sobic002G276100 Sobic002G276100 Sobic010G138000--Sobic002G276100 Sobic001G002000 Sobic001G002000 Sobic010G138000--Sobic001G002000 Sobic004G291900 Sobic004G291900 Sobic010G138000--Sobic004G291900 Sobic001G268200 Sobic001G268200 Sobic010G138000--Sobic001G268200 Sobic002G275700 Sobic002G275700 Sobic010G138000--Sobic002G275700 Sobic001G085300--Sobic001G390800 Sobic003G313500 Sobic003G313500 Sobic001G085300--Sobic003G313500 Sobic001G117200 Sobic001G117200 Sobic001G085300--Sobic001G117200 Sobic003G110000 Sobic003G110000 Sobic001G085300--Sobic003G110000 Sobic003G422500 Sobic003G422500 Sobic001G085300--Sobic003G422500 Sobic001G415300 Sobic001G415300 Sobic001G085300--Sobic001G415300 Sobic010G139600 Sobic010G139600 Sobic001G085300--Sobic010G139600 Sobic003G196300 Sobic003G196300 Sobic001G085300--Sobic003G196300 Sobic001G085300--Sobic001G268200 Sobic001G047400 Sobic001G047400 Sobic002G116900--Sobic001G047400 Sobic002G116900--Sobic004G296400 Sobic002G116900--Sobic010G251000 Sobic005G168600 Sobic005G168600 Sobic002G116900--Sobic005G168600 Sobic009G165800 Sobic009G165800 Sobic002G116900--Sobic009G165800 Sobic004G183600 Sobic004G183600 Sobic002G116900--Sobic004G183600 Sobic010G051300 Sobic010G051300 Sobic002G116900--Sobic010G051300 Sobic001G270400 Sobic001G270400 Sobic002G116900--Sobic001G270400 Sobic006G244700 Sobic006G244700 Sobic002G116900--Sobic006G244700 Sobic002G166300--Sobic003G273600 Sobic002G166300--Sobic003G233600 Sobic009G139900 Sobic009G139900 Sobic002G166300--Sobic009G139900 Sobic002G166300--Sobic004G296400 Sobic002G166300--Sobic001G079200 Sobic002G166300--Sobic009G199200 Sobic002G166300--Sobic008G004600 Sobic002G166300--Sobic001G000200 Sobic002G166300--Sobic004G136300 Sobic001G390800--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic001G390800--Sobic001G121200 Sobic001G390800--Sobic003G313500 Sobic001G390800--Sobic010G205800 Sobic001G390800--Sobic001G085300 Sobic010G147100 Sobic010G147100 Sobic001G390800--Sobic010G147100 Sobic007G075400 Sobic007G075400 Sobic001G390800--Sobic007G075400 Sobic001G390800--Sobic010G139600 Sobic001G050200 Sobic001G050200 Sobic001G390800--Sobic001G050200 Sobic001G124200--Sobic010G205800 Sobic010G020300 Sobic010G020300 Sobic001G124200--Sobic010G020300 Sobic003G155900 Sobic003G155900 Sobic001G124200--Sobic003G155900 Sobic004G039600 Sobic004G039600 Sobic001G124200--Sobic004G039600 Sobic010G278200 Sobic010G278200 Sobic001G124200--Sobic010G278200 Sobic007G132100 Sobic007G132100 Sobic001G124200--Sobic007G132100 Sobic009G138100 Sobic009G138100 Sobic001G124200--Sobic009G138100 Sobic001G124200--Sobic001G390800 Sobic009G228700 Sobic009G228700 Sobic001G124200--Sobic009G228700 Sobic002G359400 Sobic002G359400 Sobic004G040900--Sobic002G359400 Sobic002G294800 Sobic002G294800 Sobic004G040900--Sobic002G294800 Sobic010G013200 Sobic010G013200 Sobic004G040900--Sobic010G013200 Sobic001G402500 Sobic001G402500 Sobic004G040900--Sobic001G402500 Sobic008G070800 Sobic008G070800 Sobic004G040900--Sobic008G070800 Sobic001G120500 Sobic001G120500 Sobic004G040900--Sobic001G120500 Sobic008G183700 Sobic008G183700 Sobic004G040900--Sobic008G183700 Sobic004G040900--Sobic004G296400 Sobic003G355900 Sobic003G355900 Sobic004G040900--Sobic003G355900
Octagon: transcription factors


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