Gene annotation
Transcriptome id Sobic.001G341500.1
Synonym TAFII21, Sb01g032810, TAF9
Functional annotation transcription initiation factor IID, putative, expressed
UniProt C5WWP0
Pfam PF02291
Panther DB PTHR12595 PTHR12595:SF6
NCBI CDD KOG3334; Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA)
KEGG Orthology K03133; TAF9B, transcription initiation factor TFIID subunit 9B
Gene Ontology GO:0006352; DNA-templated transcription, initiation


Orthologs (automatic annotation)
TAIR AT1G54140 : TATA binding protein associated factor 21kDa subunit
RAP-DB (Rice) LOC_Os03g29470.1 : transcription initiation factor IID, putative, expressed
MaizeGDB (Corn) Zm00025a002813 , Zm00025a052166
Brachypodium KQJ89910 , KQK21318
Barley HORVU3Hr1G100530.1
Wheat TraesCS3B02G445300 , TraesCS3D02G382100 , TraesCS3A02G472800 , TraesCS3B02G516000 , TraesCS3B02G516000 , TraesCS3D02G468500
Populus -


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cDNA sequences
Sobic.001G341500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
2 Sobic.001G207500 ZOS10-06 - C2H2 zinc finger protein, expressed K15685: E3 ubiquitin-protein ligase Hakai
3 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
4 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
5 Sobic.006G049700 SAM domain family protein, expressed -
6 Sobic.001G206900 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
7 Sobic.009G149500 coiled-coil domain-containing protein 47 precursor, putative, expressed -
8 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
9 Sobic.003G127300 expressed protein -
10 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase
11 Sobic.004G232800 expressed protein -
12 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3
13 Sobic.004G252900 transcription factor IIA large subunit, putative, expressed K03122: TFIIA1, GTF2A1, transcription initiation factor TFIIA large subunit
14 Sobic.001G492200 OsFBK11 - F-box domain and kelch repeat containing protein, expressed -
15 Sobic.007G177300 kinetochore protein, putative, expressed K11547: NDC80, HEC1, kinetochore protein NDC80
16 Sobic.001G261436 - -
17 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
18 Sobic.007G097900 OsFBL45 - F-box domain and LRR containing protein, expressed -
19 Sobic.001G332300 expressed protein -
20 Sobic.007G105900 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed -


Gene co-expression network
sample Sobic001G341500 Sobic001G341500 Sobic007G167900 Sobic007G167900 Sobic001G341500--Sobic007G167900 Sobic001G207500 Sobic001G207500 Sobic001G341500--Sobic001G207500 Sobic003G374000 Sobic003G374000 Sobic001G341500--Sobic003G374000 Sobic009G192000 Sobic009G192000 Sobic001G341500--Sobic009G192000 Sobic006G049700 Sobic006G049700 Sobic001G341500--Sobic006G049700 Sobic001G206900 Sobic001G206900 Sobic001G341500--Sobic001G206900 Sobic009G149500 Sobic009G149500 Sobic001G341500--Sobic009G149500 Sobic004G092500 Sobic004G092500 Sobic001G341500--Sobic004G092500 Sobic003G127300 Sobic003G127300 Sobic001G341500--Sobic003G127300 Sobic001G085100 Sobic001G085100 Sobic007G167900--Sobic001G085100 Sobic007G167900--Sobic009G192000 Sobic007G167900--Sobic004G092500 Sobic007G167900--Sobic001G206900 Sobic002G047700 Sobic002G047700 Sobic007G167900--Sobic002G047700 Sobic006G101700 Sobic006G101700 Sobic007G167900--Sobic006G101700 Sobic010G020400 Sobic010G020400 Sobic007G167900--Sobic010G020400 Sobic009G222500 Sobic009G222500 Sobic007G167900--Sobic009G222500 Sobic007G167900--Sobic001G341500 Sobic001G207500--Sobic001G341500 Sobic003G395300 Sobic003G395300 Sobic001G207500--Sobic003G395300 Sobic007G105900 Sobic007G105900 Sobic001G207500--Sobic007G105900 Sobic001G405600 Sobic001G405600 Sobic001G207500--Sobic001G405600 Sobic001G207500--Sobic007G167900 Sobic003G273400 Sobic003G273400 Sobic001G207500--Sobic003G273400 Sobic006G039400 Sobic006G039400 Sobic001G207500--Sobic006G039400 Sobic001G358500 Sobic001G358500 Sobic001G207500--Sobic001G358500 Sobic002G347000 Sobic002G347000 Sobic001G207500--Sobic002G347000 Sobic007G118000 Sobic007G118000 Sobic003G374000--Sobic007G118000 Sobic003G374000--Sobic009G192000 Sobic010G205300 Sobic010G205300 Sobic003G374000--Sobic010G205300 Sobic002G268400 Sobic002G268400 Sobic003G374000--Sobic002G268400 Sobic003G374000--Sobic001G341500 Sobic003G374000--Sobic007G167900 Sobic003G338500 Sobic003G338500 Sobic003G374000--Sobic003G338500 Sobic001G428800 Sobic001G428800 Sobic003G374000--Sobic001G428800 Sobic008G137600 Sobic008G137600 Sobic003G374000--Sobic008G137600 Sobic001G031100 Sobic001G031100 Sobic009G192000--Sobic001G031100 Sobic009G192000--Sobic007G167900 Sobic009G192000--Sobic010G020400 Sobic003G349300 Sobic003G349300 Sobic009G192000--Sobic003G349300 Sobic001G014800 Sobic001G014800 Sobic009G192000--Sobic001G014800 Sobic009G192000--Sobic003G338500 Sobic006G180000 Sobic006G180000 Sobic009G192000--Sobic006G180000 Sobic009G192000--Sobic010G205300 Sobic009G192000--Sobic003G374000 Sobic006G049700--Sobic009G222500 Sobic007G166400 Sobic007G166400 Sobic006G049700--Sobic007G166400 Sobic003G264200 Sobic003G264200 Sobic006G049700--Sobic003G264200 Sobic006G049700--Sobic006G101700 Sobic006G049700--Sobic007G167900 Sobic004G226800 Sobic004G226800 Sobic006G049700--Sobic004G226800 Sobic010G027600 Sobic010G027600 Sobic006G049700--Sobic010G027600 Sobic002G113900 Sobic002G113900 Sobic006G049700--Sobic002G113900 Sobic004G356900 Sobic004G356900 Sobic006G049700--Sobic004G356900 Sobic001G323000 Sobic001G323000 Sobic001G206900--Sobic001G323000 Sobic003G312200 Sobic003G312200 Sobic001G206900--Sobic003G312200 Sobic004G010900 Sobic004G010900 Sobic001G206900--Sobic004G010900 Sobic004G181900 Sobic004G181900 Sobic001G206900--Sobic004G181900 Sobic001G206900--Sobic001G085100 Sobic001G206900--Sobic009G149500 Sobic006G148200 Sobic006G148200 Sobic001G206900--Sobic006G148200 Sobic001G206900--Sobic007G167900 Sobic001G206900--Sobic003G349300 Sobic009G149500--Sobic001G206900 Sobic009G149500--Sobic010G020400 Sobic007G188300 Sobic007G188300 Sobic009G149500--Sobic007G188300 Sobic010G223300 Sobic010G223300 Sobic009G149500--Sobic010G223300 Sobic009G149500--Sobic001G014800 Sobic009G149500--Sobic009G192000 Sobic009G149500--Sobic004G181900 Sobic009G149500--Sobic004G010900 Sobic009G149500--Sobic003G338500 Sobic007G132100 Sobic007G132100 Sobic004G092500--Sobic007G132100 Sobic001G493200 Sobic001G493200 Sobic004G092500--Sobic001G493200 Sobic004G092500--Sobic010G223300 Sobic003G143200 Sobic003G143200 Sobic004G092500--Sobic003G143200 Sobic004G092500--Sobic010G020400 Sobic004G257100 Sobic004G257100 Sobic004G092500--Sobic004G257100 Sobic004G039600 Sobic004G039600 Sobic004G092500--Sobic004G039600 Sobic006G077200 Sobic006G077200 Sobic004G092500--Sobic006G077200 Sobic004G092500--Sobic007G167900 Sobic009G199700 Sobic009G199700 Sobic003G127300--Sobic009G199700 Sobic001G364600 Sobic001G364600 Sobic003G127300--Sobic001G364600 Sobic002G298300 Sobic002G298300 Sobic003G127300--Sobic002G298300 Sobic003G127300--Sobic001G341500 Sobic004G060600 Sobic004G060600 Sobic003G127300--Sobic004G060600 Sobic004G074300 Sobic004G074300 Sobic003G127300--Sobic004G074300 Sobic002G242200 Sobic002G242200 Sobic003G127300--Sobic002G242200 Sobic003G405900 Sobic003G405900 Sobic003G127300--Sobic003G405900 Sobic003G127300--Sobic008G137600
Octagon: transcription factors


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