Gene annotation
Transcriptome id Sobic.004G253100.1,Sobic.004G253100.4,Sobic.004G253100.2,Sobic.004G253100.3
Synonym Sb04g029250
Functional annotation armadillo/beta-catenin repeat family protein, putative, expressed
UniProt C5XZP5
Pfam PF04564 PF00514
Panther DB PTHR22849 PTHR22849:SF3
NCBI CDD KOG4224; Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G68940 : Armadillo/beta-catenin-like repeat family protein
RAP-DB (Rice) LOC_Os02g49520.1 : armadillo/beta-catenin repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a050461 , Zm00025a032605
Brachypodium KQK01510
Barley HORVU6Hr1G072420.8 , HORVU6Hr1G072420.3 , HORVU6Hr1G072420.2 , HORVU6Hr1G072420.1 , HORVU6Hr1G072420.7 , HORVU6Hr1G072420.6 , HORVU6Hr1G072420.5 , HORVU6Hr1G072420.4 , HORVU6Hr1G072420.22 , HORVU6Hr1G072420.23 , HORVU6Hr1G072420.20 , HORVU6Hr1G072420.21 , HORVU6Hr1G072420.19 , HORVU6Hr1G072420.18 , HORVU6Hr1G072420.12 , HORVU6Hr1G072420.11 , HORVU6Hr1G072420.10 , HORVU6Hr1G072420.17 , HORVU6Hr1G072420.16 , HORVU6Hr1G072420.15 , HORVU6Hr1G072420.14
Wheat TraesCS7B02G118900 , TraesCS6D02G270400 , TraesCS7D02G213600 , TraesCS7B02G118900 , TraesCS6A02G288500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G540800 DNA binding protein, putative, expressed -
2 Sobic.006G000700 - -
3 Sobic.004G290000 OsSub19 - Putative Subtilisin homologue, expressed K01280: tripeptidyl-peptidase II
4 Sobic.004G023100 protein binding protein, putative, expressed -
5 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
6 Sobic.004G144400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
7 Sobic.009G002300 expressed protein -
8 Sobic.004G176000 "SDG725(Ortholog in rice:Sui et al., 2012)"(PubMedID : 31659884)@histone-lysine N-methyltransferase ASHH2, putative, expressed -
9 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
10 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
11 Sobic.002G391600 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K12854: SNRNP200, pre-mRNA-splicing helicase BRR2
12 Sobic.006G036100 expressed protein K11266: MAternally affected uncoordination
13 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
14 Sobic.001G203400 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
15 Sobic.004G019500 pentatricopeptide, putative, expressed -
16 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
17 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
18 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
19 Sobic.008G070800 expressed protein -
20 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II


Gene co-expression network
sample Sobic004G253100 Sobic004G253100 Sobic001G540800 Sobic001G540800 Sobic004G253100--Sobic001G540800 Sobic006G000700 Sobic006G000700 Sobic004G253100--Sobic006G000700 Sobic004G290000 Sobic004G290000 Sobic004G253100--Sobic004G290000 Sobic004G023100 Sobic004G023100 Sobic004G253100--Sobic004G023100 Sobic010G053600 Sobic010G053600 Sobic004G253100--Sobic010G053600 Sobic004G144400 Sobic004G144400 Sobic004G253100--Sobic004G144400 Sobic009G002300 Sobic009G002300 Sobic004G253100--Sobic009G002300 Sobic004G176000 Sobic004G176000 Sobic004G253100--Sobic004G176000 Sobic008G082500 Sobic008G082500 Sobic004G253100--Sobic008G082500 Sobic006G036100 Sobic006G036100 Sobic001G540800--Sobic006G036100 Sobic002G425500 Sobic002G425500 Sobic001G540800--Sobic002G425500 Sobic002G145800 Sobic002G145800 Sobic001G540800--Sobic002G145800 Sobic010G145800 Sobic010G145800 Sobic001G540800--Sobic010G145800 Sobic004G019500 Sobic004G019500 Sobic001G540800--Sobic004G019500 Sobic001G227200 Sobic001G227200 Sobic001G540800--Sobic001G227200 Sobic006G269800 Sobic006G269800 Sobic001G540800--Sobic006G269800 Sobic001G020000 Sobic001G020000 Sobic001G540800--Sobic001G020000 Sobic002G309200 Sobic002G309200 Sobic001G540800--Sobic002G309200 Sobic006G000700--Sobic004G253100 Sobic003G196900 Sobic003G196900 Sobic006G000700--Sobic003G196900 Sobic009G050900 Sobic009G050900 Sobic006G000700--Sobic009G050900 Sobic001G219600 Sobic001G219600 Sobic006G000700--Sobic001G219600 Sobic006G000700--Sobic010G053600 Sobic009G017400 Sobic009G017400 Sobic006G000700--Sobic009G017400 Sobic009G047200 Sobic009G047200 Sobic006G000700--Sobic009G047200 Sobic002G313400 Sobic002G313400 Sobic006G000700--Sobic002G313400 Sobic008G011100 Sobic008G011100 Sobic006G000700--Sobic008G011100 Sobic006G219300 Sobic006G219300 Sobic004G290000--Sobic006G219300 Sobic008G004300 Sobic008G004300 Sobic004G290000--Sobic008G004300 Sobic004G290000--Sobic004G253100 Sobic004G290000--Sobic004G023100 Sobic002G166300 Sobic002G166300 Sobic004G290000--Sobic002G166300 Sobic001G004400 Sobic001G004400 Sobic004G290000--Sobic001G004400 Sobic005G096400 Sobic005G096400 Sobic004G290000--Sobic005G096400 Sobic009G139900 Sobic009G139900 Sobic004G290000--Sobic009G139900 Sobic002G428800 Sobic002G428800 Sobic004G290000--Sobic002G428800 Sobic001G542500 Sobic001G542500 Sobic004G023100--Sobic001G542500 Sobic008G085300 Sobic008G085300 Sobic004G023100--Sobic008G085300 Sobic002G397500 Sobic002G397500 Sobic004G023100--Sobic002G397500 Sobic004G040500 Sobic004G040500 Sobic004G023100--Sobic004G040500 Sobic004G291900 Sobic004G291900 Sobic004G023100--Sobic004G291900 Sobic009G109200 Sobic009G109200 Sobic004G023100--Sobic009G109200 Sobic001G287500 Sobic001G287500 Sobic004G023100--Sobic001G287500 Sobic001G002000 Sobic001G002000 Sobic004G023100--Sobic001G002000 Sobic010G223100 Sobic010G223100 Sobic004G023100--Sobic010G223100 Sobic001G352900 Sobic001G352900 Sobic010G053600--Sobic001G352900 Sobic002G391600 Sobic002G391600 Sobic010G053600--Sobic002G391600 Sobic010G053600--Sobic009G109200 Sobic010G053600--Sobic001G004400 Sobic007G171100 Sobic007G171100 Sobic010G053600--Sobic007G171100 Sobic004G260100 Sobic004G260100 Sobic010G053600--Sobic004G260100 Sobic010G053600--Sobic006G036100 Sobic004G248600 Sobic004G248600 Sobic010G053600--Sobic004G248600 Sobic004G242400 Sobic004G242400 Sobic010G053600--Sobic004G242400 Sobic004G144400--Sobic004G019500 Sobic008G067100 Sobic008G067100 Sobic004G144400--Sobic008G067100 Sobic008G090900 Sobic008G090900 Sobic004G144400--Sobic008G090900 Sobic004G003900 Sobic004G003900 Sobic004G144400--Sobic004G003900 Sobic002G181132 Sobic002G181132 Sobic004G144400--Sobic002G181132 Sobic004G301200 Sobic004G301200 Sobic004G144400--Sobic004G301200 Sobic009G092900 Sobic009G092900 Sobic004G144400--Sobic009G092900 Sobic002G218500 Sobic002G218500 Sobic004G144400--Sobic002G218500 Sobic009G129100 Sobic009G129100 Sobic004G144400--Sobic009G129100 Sobic002G148750 Sobic002G148750 Sobic009G002300--Sobic002G148750 Sobic009G002300--Sobic009G129100 Sobic003G168100 Sobic003G168100 Sobic009G002300--Sobic003G168100 Sobic008G088806 Sobic008G088806 Sobic009G002300--Sobic008G088806 Sobic006G031800 Sobic006G031800 Sobic009G002300--Sobic006G031800 Sobic001G145000 Sobic001G145000 Sobic009G002300--Sobic001G145000 Sobic007G136800 Sobic007G136800 Sobic009G002300--Sobic007G136800 Sobic005G059800 Sobic005G059800 Sobic009G002300--Sobic005G059800 Sobic010G140400 Sobic010G140400 Sobic009G002300--Sobic010G140400 Sobic001G214600 Sobic001G214600 Sobic004G176000--Sobic001G214600 Sobic004G176000--Sobic001G352900 Sobic001G261900 Sobic001G261900 Sobic004G176000--Sobic001G261900 Sobic004G176000--Sobic010G053600 Sobic004G176000--Sobic004G023100 Sobic004G176000--Sobic004G260100 Sobic001G493200 Sobic001G493200 Sobic004G176000--Sobic001G493200 Sobic006G210000 Sobic006G210000 Sobic004G176000--Sobic006G210000 Sobic007G212300 Sobic007G212300 Sobic004G176000--Sobic007G212300 Sobic009G084900 Sobic009G084900 Sobic008G082500--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic008G082500--Sobic010G185400 Sobic010G206300 Sobic010G206300 Sobic008G082500--Sobic010G206300 Sobic006G077200 Sobic006G077200 Sobic008G082500--Sobic006G077200 Sobic010G059500 Sobic010G059500 Sobic008G082500--Sobic010G059500 Sobic008G082500--Sobic001G493200 Sobic002G020700 Sobic002G020700 Sobic008G082500--Sobic002G020700 Sobic001G145400 Sobic001G145400 Sobic008G082500--Sobic001G145400 Sobic008G082500--Sobic004G023100
Octagon: transcription factors


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