Gene annotation
Transcriptome id Sobic.008G051300.2,Sobic.008G051300.1
Synonym LACS9, Sb08g004330
Functional annotation acyl-CoA synthetase protein, putative, expressed
UniProt A0A1B6PBC1
Pfam PF00501
Panther DB PTHR24096 PTHR24096:SF181
NCBI CDD -
KEGG Orthology K01897; ACSL, long-chain acyl-CoA synthetase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G77590 : long chain acyl-CoA synthetase 9
RAP-DB (Rice) LOC_Os12g07110.1 : acyl-CoA synthetase protein, putative, expressed
MaizeGDB (Corn) Zm00025a033972 , Zm00025a054026
Brachypodium KQJ89218 , KQJ89219 , KQJ92081 , KQJ89221 , KQJ89220 , KQJ89222
Barley HORVU5Hr1G036460.1 , HORVU5Hr1G036460.2 , HORVU5Hr1G036460.3 , HORVU4Hr1G019780.12 , HORVU4Hr1G019780.13 , HORVU4Hr1G019780.11 , HORVU4Hr1G019780.10 , HORVU4Hr1G019780.9 , HORVU4Hr1G019780.8 , HORVU4Hr1G019780.3 , HORVU4Hr1G019780.2 , HORVU4Hr1G019780.1 , HORVU4Hr1G019780.7 , HORVU4Hr1G019780.6 , HORVU4Hr1G019780.5 , HORVU4Hr1G019780.4
Wheat TraesCS4D02G108300 , TraesCS5B02G118000 , TraesCS4A02G207000 , TraesCS5D02G129800 , TraesCS4B02G110600 , TraesCS5A02G117700
Populus -


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cDNA sequences
Sobic.008G051300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G082200 ACT domain containing protein, expressed K01653: E2.2.1.6S, ilvH, acetolactate synthase I/III small subunit
2 Sobic.004G079800 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
3 Sobic.006G105800 tyrosyl-tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
4 Sobic.004G359100 expressed protein -
5 Sobic.002G118200 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
6 Sobic.007G005400 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
7 Sobic.003G085100 MYB family transcription factor, putative, expressed -
8 Sobic.004G235600 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
9 Sobic.003G150800 preprotein translocase subunit secA, chloroplast precursor, putative, expressed K03070: preprotein translocase subunit SecA
10 Sobic.001G327800 uncharacterized mscS family protein, putative, expressed K16052: ynaI, MscS family membrane protein
11 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
12 Sobic.003G418100 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
13 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
14 Sobic.001G531500 peroxisomal biogenesis factor 11, putative, expressed -
15 Sobic.002G424700 ATPOT1, putative, expressed -
16 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
17 Sobic.010G205100 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
18 Sobic.005G072100 preprotein translocase secA family protein, putative, expressed K03070: preprotein translocase subunit SecA
19 Sobic.001G257700 ribosomal protein S18 containing protein, expressed -
20 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase


Gene co-expression network
sample Sobic008G051300 Sobic008G051300 Sobic005G082200 Sobic005G082200 Sobic008G051300--Sobic005G082200 Sobic004G079800 Sobic004G079800 Sobic008G051300--Sobic004G079800 Sobic006G105800 Sobic006G105800 Sobic008G051300--Sobic006G105800 Sobic004G359100 Sobic004G359100 Sobic008G051300--Sobic004G359100 Sobic002G118200 Sobic002G118200 Sobic008G051300--Sobic002G118200 Sobic007G005400 Sobic007G005400 Sobic008G051300--Sobic007G005400 Sobic003G085100 Sobic003G085100 Sobic008G051300--Sobic003G085100 Sobic004G235600 Sobic004G235600 Sobic008G051300--Sobic004G235600 Sobic003G150800 Sobic003G150800 Sobic008G051300--Sobic003G150800 Sobic005G082200--Sobic008G051300 Sobic001G327800 Sobic001G327800 Sobic005G082200--Sobic001G327800 Sobic005G082200--Sobic004G359100 Sobic002G343400 Sobic002G343400 Sobic005G082200--Sobic002G343400 Sobic003G067100 Sobic003G067100 Sobic005G082200--Sobic003G067100 Sobic002G424700 Sobic002G424700 Sobic005G082200--Sobic002G424700 Sobic005G072100 Sobic005G072100 Sobic005G082200--Sobic005G072100 Sobic004G054400 Sobic004G054400 Sobic005G082200--Sobic004G054400 Sobic002G293600 Sobic002G293600 Sobic005G082200--Sobic002G293600 Sobic006G128300 Sobic006G128300 Sobic004G079800--Sobic006G128300 Sobic001G495200 Sobic001G495200 Sobic004G079800--Sobic001G495200 Sobic009G092900 Sobic009G092900 Sobic004G079800--Sobic009G092900 Sobic001G025400 Sobic001G025400 Sobic004G079800--Sobic001G025400 Sobic004G079800--Sobic003G150800 Sobic001G198400 Sobic001G198400 Sobic004G079800--Sobic001G198400 Sobic002G274200 Sobic002G274200 Sobic004G079800--Sobic002G274200 Sobic006G038500 Sobic006G038500 Sobic004G079800--Sobic006G038500 Sobic004G079800--Sobic003G085100 Sobic006G105800--Sobic003G085100 Sobic006G105800--Sobic007G005400 Sobic006G105800--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic006G105800--Sobic005G111550 Sobic006G055800 Sobic006G055800 Sobic006G105800--Sobic006G055800 Sobic004G336000 Sobic004G336000 Sobic006G105800--Sobic004G336000 Sobic008G001900 Sobic008G001900 Sobic006G105800--Sobic008G001900 Sobic006G105800--Sobic004G235600 Sobic005G001700 Sobic005G001700 Sobic006G105800--Sobic005G001700 Sobic004G359100--Sobic002G343400 Sobic002G431300 Sobic002G431300 Sobic004G359100--Sobic002G431300 Sobic004G359100--Sobic005G082200 Sobic004G238900 Sobic004G238900 Sobic004G359100--Sobic004G238900 Sobic004G359100--Sobic003G067100 Sobic010G255100 Sobic010G255100 Sobic004G359100--Sobic010G255100 Sobic003G083400 Sobic003G083400 Sobic004G359100--Sobic003G083400 Sobic001G375000 Sobic001G375000 Sobic004G359100--Sobic001G375000 Sobic006G088000 Sobic006G088000 Sobic004G359100--Sobic006G088000 Sobic002G118200--Sobic007G005400 Sobic005G084500 Sobic005G084500 Sobic002G118200--Sobic005G084500 Sobic001G531500 Sobic001G531500 Sobic002G118200--Sobic001G531500 Sobic002G118200--Sobic003G085100 Sobic002G258600 Sobic002G258600 Sobic002G118200--Sobic002G258600 Sobic009G123900 Sobic009G123900 Sobic002G118200--Sobic009G123900 Sobic004G019800 Sobic004G019800 Sobic002G118200--Sobic004G019800 Sobic009G093100 Sobic009G093100 Sobic002G118200--Sobic009G093100 Sobic008G074000 Sobic008G074000 Sobic002G118200--Sobic008G074000 Sobic007G005400--Sobic003G085100 Sobic007G005400--Sobic002G118200 Sobic007G005400--Sobic005G084500 Sobic004G238200 Sobic004G238200 Sobic007G005400--Sobic004G238200 Sobic007G005400--Sobic003G150800 Sobic003G287900 Sobic003G287900 Sobic007G005400--Sobic003G287900 Sobic005G231100 Sobic005G231100 Sobic007G005400--Sobic005G231100 Sobic004G337400 Sobic004G337400 Sobic007G005400--Sobic004G337400 Sobic007G185700 Sobic007G185700 Sobic007G005400--Sobic007G185700 Sobic003G085100--Sobic003G150800 Sobic003G085100--Sobic007G005400 Sobic003G085100--Sobic005G111550 Sobic003G160800 Sobic003G160800 Sobic003G085100--Sobic003G160800 Sobic005G063000 Sobic005G063000 Sobic003G085100--Sobic005G063000 Sobic003G233700 Sobic003G233700 Sobic003G085100--Sobic003G233700 Sobic001G001300 Sobic001G001300 Sobic003G085100--Sobic001G001300 Sobic003G085100--Sobic003G287900 Sobic003G085100--Sobic008G001900 Sobic004G235600--Sobic008G001900 Sobic001G073900 Sobic001G073900 Sobic004G235600--Sobic001G073900 Sobic003G442700 Sobic003G442700 Sobic004G235600--Sobic003G442700 Sobic003G332700 Sobic003G332700 Sobic004G235600--Sobic003G332700 Sobic004G235600--Sobic003G085100 Sobic004G235600--Sobic005G001700 Sobic002G314400 Sobic002G314400 Sobic004G235600--Sobic002G314400 Sobic002G042500 Sobic002G042500 Sobic004G235600--Sobic002G042500 Sobic001G465700 Sobic001G465700 Sobic004G235600--Sobic001G465700 Sobic003G150800--Sobic003G085100 Sobic003G150800--Sobic002G042500 Sobic003G150800--Sobic005G111550 Sobic003G150800--Sobic007G005400 Sobic001G037500 Sobic001G037500 Sobic003G150800--Sobic001G037500 Sobic003G150800--Sobic005G063000 Sobic003G150800--Sobic002G314400 Sobic004G328400 Sobic004G328400 Sobic003G150800--Sobic004G328400 Sobic003G141100 Sobic003G141100 Sobic003G150800--Sobic003G141100
Octagon: transcription factors


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