Gene annotation
Transcriptome id Sobic.003G238000.2,Sobic.003G238000.3,Sobic.003G238000.1
Synonym Sb03g029530, RAN3, ATRAN3
Functional annotation ras-related protein, putative, expressed
UniProt A0A1B6Q4Z4 , A0A1B6Q4Z8 , A0A1B6Q4Z7
Pfam PF00025
Panther DB PTHR24071
NCBI CDD KOG0096; GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily
KEGG Orthology K07936; GTP-binding nuclear protein Ran
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G55190 : RAN GTPase 3
RAP-DB (Rice) LOC_Os05g49890.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a038686 , Zm00025a044657 , Zm00025a028244
Brachypodium KQK04751
Barley HORVU1Hr1G090760.7 , HORVU1Hr1G090760.4 , HORVU1Hr1G090760.3 , HORVU1Hr1G090760.2 , HORVU1Hr1G090760.1
Wheat TraesCS1B02G443100 , TraesCS1B02G443100 , TraesCS1A02G413000 , TraesCS1D02G420600 , TraesCS1D02G420600
Populus PNT33651 , PNT33650 , PNT33653 , PNT33652 , PNS92409


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cDNA sequences
Sobic.003G238000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G293300 octicosapeptide/Phox/Bem1p, putative, expressed -
2 Sobic.004G059900 bZIP transcription factor domain containing protein, expressed -
3 Sobic.001G436000 expressed protein -
4 Sobic.001G523200 CBL-interacting protein kinase 9(PubMedID : 26465154)@CBL-interacting protein kinase 9(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
5 Sobic.003G032900 expressed protein -
6 Sobic.001G358300 SNARE associated Golgi protein, putative, expressed -
7 Sobic.009G180500 Myb-like DNA-binding domain containing protein, putative, expressed -
8 Sobic.007G140900 similar to Putative uncharacterized protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
9 Sobic.002G379400 CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
10 Sobic.009G231200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein of unknown function DUF1421 domain containing protein, expressed -
11 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
12 Sobic.002G125300 up-regulated by silicon application(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
13 Sobic.001G082900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
14 Sobic.002G397600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
15 Sobic.003G141800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@polygalacturonase, putative, expressed -
16 Sobic.006G220200 CPuORF12 - conserved peptide uORF-containing transcript, expressed K17839: PAO4, PAO3, polyamine oxidase
17 Sobic.009G195800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
18 Sobic.002G388400 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@haloacid dehalogenase-like hydrolase family protein, putative, expressed K18551: pyrimidine and pyridine-specific 5'-nucleotidase
19 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
20 Sobic.003G367300 actin, putative, expressed K10355: actin, other eukaryote


Gene co-expression network
sample Sobic003G238000 Sobic003G238000 Sobic002G293300 Sobic002G293300 Sobic003G238000--Sobic002G293300 Sobic004G059900 Sobic004G059900 Sobic003G238000--Sobic004G059900 Sobic001G436000 Sobic001G436000 Sobic003G238000--Sobic001G436000 Sobic001G523200 Sobic001G523200 Sobic003G238000--Sobic001G523200 Sobic003G032900 Sobic003G032900 Sobic003G238000--Sobic003G032900 Sobic001G358300 Sobic001G358300 Sobic003G238000--Sobic001G358300 Sobic009G180500 Sobic009G180500 Sobic003G238000--Sobic009G180500 Sobic007G140900 Sobic007G140900 Sobic003G238000--Sobic007G140900 Sobic002G379400 Sobic002G379400 Sobic003G238000--Sobic002G379400 Sobic003G367300 Sobic003G367300 Sobic002G293300--Sobic003G367300 Sobic002G293300--Sobic001G436000 Sobic002G293300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G293300--Sobic010G052800 Sobic009G231200 Sobic009G231200 Sobic002G293300--Sobic009G231200 Sobic002G330300 Sobic002G330300 Sobic002G293300--Sobic002G330300 Sobic001G082900 Sobic001G082900 Sobic002G293300--Sobic001G082900 Sobic004G025000 Sobic004G025000 Sobic002G293300--Sobic004G025000 Sobic001G516100 Sobic001G516100 Sobic002G293300--Sobic001G516100 Sobic004G059900--Sobic001G358300 Sobic004G059900--Sobic003G238000 Sobic002G343300 Sobic002G343300 Sobic004G059900--Sobic002G343300 Sobic001G311100 Sobic001G311100 Sobic004G059900--Sobic001G311100 Sobic007G216500 Sobic007G216500 Sobic004G059900--Sobic007G216500 Sobic004G059900--Sobic002G293300 Sobic001G415000 Sobic001G415000 Sobic004G059900--Sobic001G415000 Sobic004G059900--Sobic009G231200 Sobic002G397600 Sobic002G397600 Sobic004G059900--Sobic002G397600 Sobic001G436000--Sobic002G379400 Sobic001G436000--Sobic002G293300 Sobic001G436000--Sobic004G025000 Sobic008G059000 Sobic008G059000 Sobic001G436000--Sobic008G059000 Sobic001G081600 Sobic001G081600 Sobic001G436000--Sobic001G081600 Sobic001G436000--Sobic002G330300 Sobic001G436000--Sobic003G367300 Sobic006G205200 Sobic006G205200 Sobic001G436000--Sobic006G205200 Sobic002G344700 Sobic002G344700 Sobic001G436000--Sobic002G344700 Sobic009G195800 Sobic009G195800 Sobic001G523200--Sobic009G195800 Sobic001G523200--Sobic003G238000 Sobic006G267900 Sobic006G267900 Sobic001G523200--Sobic006G267900 Sobic001G523200--Sobic002G293300 Sobic002G189000 Sobic002G189000 Sobic001G523200--Sobic002G189000 Sobic004G315600 Sobic004G315600 Sobic001G523200--Sobic004G315600 Sobic010G260300 Sobic010G260300 Sobic001G523200--Sobic010G260300 Sobic001G523200--Sobic001G436000 Sobic009G183101 Sobic009G183101 Sobic001G523200--Sobic009G183101 Sobic001G063600 Sobic001G063600 Sobic003G032900--Sobic001G063600 Sobic004G278200 Sobic004G278200 Sobic003G032900--Sobic004G278200 Sobic002G427400 Sobic002G427400 Sobic003G032900--Sobic002G427400 Sobic008G159100 Sobic008G159100 Sobic003G032900--Sobic008G159100 Sobic001G080300 Sobic001G080300 Sobic003G032900--Sobic001G080300 Sobic001G476400 Sobic001G476400 Sobic003G032900--Sobic001G476400 Sobic003G373150 Sobic003G373150 Sobic003G032900--Sobic003G373150 Sobic010G080400 Sobic010G080400 Sobic003G032900--Sobic010G080400 Sobic003G032900--Sobic004G025000 Sobic001G103200 Sobic001G103200 Sobic001G358300--Sobic001G103200 Sobic001G358300--Sobic001G415000 Sobic001G358300--Sobic004G059900 Sobic003G002400 Sobic003G002400 Sobic001G358300--Sobic003G002400 Sobic004G271700 Sobic004G271700 Sobic001G358300--Sobic004G271700 Sobic004G350300 Sobic004G350300 Sobic001G358300--Sobic004G350300 Sobic004G058200 Sobic004G058200 Sobic001G358300--Sobic004G058200 Sobic001G434900 Sobic001G434900 Sobic001G358300--Sobic001G434900 Sobic001G358300--Sobic003G238000 Sobic003G309200 Sobic003G309200 Sobic009G180500--Sobic003G309200 Sobic009G180500--Sobic009G231200 Sobic009G180500--Sobic002G293300 Sobic009G200800 Sobic009G200800 Sobic009G180500--Sobic009G200800 Sobic009G180500--Sobic003G002400 Sobic001G426800 Sobic001G426800 Sobic009G180500--Sobic001G426800 Sobic001G031600 Sobic001G031600 Sobic009G180500--Sobic001G031600 Sobic009G180500--Sobic003G238000 Sobic009G180500--Sobic001G358300 Sobic007G140900--Sobic009G195800 Sobic007G160200 Sobic007G160200 Sobic007G140900--Sobic007G160200 Sobic009G037800 Sobic009G037800 Sobic007G140900--Sobic009G037800 Sobic007G140900--Sobic003G238000 Sobic007G140900--Sobic001G436000 Sobic010G233400 Sobic010G233400 Sobic007G140900--Sobic010G233400 Sobic007G140900--Sobic001G082900 Sobic007G140900--Sobic001G523200 Sobic004G283300 Sobic004G283300 Sobic007G140900--Sobic004G283300 Sobic002G379400--Sobic004G025000 Sobic002G379400--Sobic002G330300 Sobic003G338900 Sobic003G338900 Sobic002G379400--Sobic003G338900 Sobic008G016900 Sobic008G016900 Sobic002G379400--Sobic008G016900 Sobic010G228000 Sobic010G228000 Sobic002G379400--Sobic010G228000 Sobic002G118600 Sobic002G118600 Sobic002G379400--Sobic002G118600 Sobic006G263100 Sobic006G263100 Sobic002G379400--Sobic006G263100 Sobic002G379400--Sobic001G436000 Sobic002G294700 Sobic002G294700 Sobic002G379400--Sobic002G294700
Octagon: transcription factors


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