Gene annotation
Transcriptome id Sobic.002G397600.1,Sobic.002G397600.2,Sobic.002G397600.3
Synonym Sb02g041250
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
protein phosphatase 2C, putative, expressed
UniProt A0A1B6QFX8 , A0A1W0W7Q1 , C5X417
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF267
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT3G06270 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os07g45170.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a015321 , Zm00025a048971
Brachypodium KQK14930 , KQK14931 , KQK14932 , KQK14933 , KQK05177 , KQK14491
Barley HORVU2Hr1G025020.7 , HORVU2Hr1G025020.9 , HORVU2Hr1G025020.8 , HORVU2Hr1G025020.18 , HORVU2Hr1G025020.17 , HORVU2Hr1G025020.16 , HORVU2Hr1G025020.12 , HORVU1Hr1G080290.6 , HORVU1Hr1G080290.7 , HORVU1Hr1G080290.1
Wheat TraesCS1B02G375100 , TraesCS1A02G358600 , TraesCS2A02G000400 , TraesCS2B02G166100 , TraesCS2B02G166100 , TraesCS2B02G166100 , TraesCS2A02G141100 , TraesCS2A02G141100 , TraesCS2A02G141100 , TraesCS1D02G363500 , TraesCS2D02G144500 , TraesCS2D02G144500 , TraesCS2D02G144500 , TraesCS2D02G000300
Populus -


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cDNA sequences
Sobic.002G397600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G059900 bZIP transcription factor domain containing protein, expressed -
2 Sobic.003G238000 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
3 Sobic.003G188000 TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
4 Sobic.001G523200 CBL-interacting protein kinase 9(PubMedID : 26465154)@CBL-interacting protein kinase 9(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
5 Sobic.004G315600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase/ transition metal ion binding protein, putative, expressed -
6 Sobic.001G358300 SNARE associated Golgi protein, putative, expressed -
7 Sobic.009G180500 Myb-like DNA-binding domain containing protein, putative, expressed -
8 Sobic.001G103200 DNA binding protein, putative, expressed -
9 Sobic.002G293300 octicosapeptide/Phox/Bem1p, putative, expressed -
10 Sobic.009G179600 expressed protein -
11 Sobic.003G395100 tetratricopeptide repeat protein 1, putative, expressed -
12 Sobic.001G415000 expressed protein -
13 Sobic.009G135100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipase, putative, expressed -
14 Sobic.002G271100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
15 Sobic.009G073000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsGrx_C15 - glutaredoxin subgroup III, expressed -
16 Sobic.002G343300 zinc finger family protein, putative, expressed -
17 Sobic.009G231200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein of unknown function DUF1421 domain containing protein, expressed -
18 Sobic.003G036600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-related transcription activator, putative, expressed -
19 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
20 Sobic.001G420100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8


Gene co-expression network
sample Sobic002G397600 Sobic002G397600 Sobic004G059900 Sobic004G059900 Sobic002G397600--Sobic004G059900 Sobic003G238000 Sobic003G238000 Sobic002G397600--Sobic003G238000 Sobic003G188000 Sobic003G188000 Sobic002G397600--Sobic003G188000 Sobic001G523200 Sobic001G523200 Sobic002G397600--Sobic001G523200 Sobic004G315600 Sobic004G315600 Sobic002G397600--Sobic004G315600 Sobic001G358300 Sobic001G358300 Sobic002G397600--Sobic001G358300 Sobic009G180500 Sobic009G180500 Sobic002G397600--Sobic009G180500 Sobic001G103200 Sobic001G103200 Sobic002G397600--Sobic001G103200 Sobic002G293300 Sobic002G293300 Sobic002G397600--Sobic002G293300 Sobic004G059900--Sobic001G358300 Sobic004G059900--Sobic003G238000 Sobic002G343300 Sobic002G343300 Sobic004G059900--Sobic002G343300 Sobic001G311100 Sobic001G311100 Sobic004G059900--Sobic001G311100 Sobic007G216500 Sobic007G216500 Sobic004G059900--Sobic007G216500 Sobic004G059900--Sobic002G293300 Sobic001G415000 Sobic001G415000 Sobic004G059900--Sobic001G415000 Sobic009G231200 Sobic009G231200 Sobic004G059900--Sobic009G231200 Sobic004G059900--Sobic002G397600 Sobic003G238000--Sobic002G293300 Sobic003G238000--Sobic004G059900 Sobic001G436000 Sobic001G436000 Sobic003G238000--Sobic001G436000 Sobic003G238000--Sobic001G523200 Sobic003G032900 Sobic003G032900 Sobic003G238000--Sobic003G032900 Sobic003G238000--Sobic001G358300 Sobic003G238000--Sobic009G180500 Sobic007G140900 Sobic007G140900 Sobic003G238000--Sobic007G140900 Sobic002G379400 Sobic002G379400 Sobic003G238000--Sobic002G379400 Sobic009G073000 Sobic009G073000 Sobic003G188000--Sobic009G073000 Sobic010G071700 Sobic010G071700 Sobic003G188000--Sobic010G071700 Sobic001G243000 Sobic001G243000 Sobic003G188000--Sobic001G243000 Sobic006G267900 Sobic006G267900 Sobic003G188000--Sobic006G267900 Sobic010G265600 Sobic010G265600 Sobic003G188000--Sobic010G265600 Sobic003G141800 Sobic003G141800 Sobic003G188000--Sobic003G141800 Sobic004G321000 Sobic004G321000 Sobic003G188000--Sobic004G321000 Sobic003G293600 Sobic003G293600 Sobic003G188000--Sobic003G293600 Sobic002G203000 Sobic002G203000 Sobic003G188000--Sobic002G203000 Sobic009G195800 Sobic009G195800 Sobic001G523200--Sobic009G195800 Sobic001G523200--Sobic003G238000 Sobic001G523200--Sobic006G267900 Sobic001G523200--Sobic002G293300 Sobic002G189000 Sobic002G189000 Sobic001G523200--Sobic002G189000 Sobic001G523200--Sobic004G315600 Sobic010G260300 Sobic010G260300 Sobic001G523200--Sobic010G260300 Sobic001G523200--Sobic001G436000 Sobic009G183101 Sobic009G183101 Sobic001G523200--Sobic009G183101 Sobic004G315600--Sobic009G183101 Sobic010G026500 Sobic010G026500 Sobic004G315600--Sobic010G026500 Sobic004G315600--Sobic009G231200 Sobic004G315600--Sobic001G523200 Sobic004G315600--Sobic010G260300 Sobic010G182700 Sobic010G182700 Sobic004G315600--Sobic010G182700 Sobic001G426800 Sobic001G426800 Sobic004G315600--Sobic001G426800 Sobic004G315600--Sobic009G195800 Sobic003G397500 Sobic003G397500 Sobic004G315600--Sobic003G397500 Sobic001G358300--Sobic001G103200 Sobic001G358300--Sobic001G415000 Sobic001G358300--Sobic004G059900 Sobic003G002400 Sobic003G002400 Sobic001G358300--Sobic003G002400 Sobic004G271700 Sobic004G271700 Sobic001G358300--Sobic004G271700 Sobic004G350300 Sobic004G350300 Sobic001G358300--Sobic004G350300 Sobic004G058200 Sobic004G058200 Sobic001G358300--Sobic004G058200 Sobic001G434900 Sobic001G434900 Sobic001G358300--Sobic001G434900 Sobic001G358300--Sobic003G238000 Sobic003G309200 Sobic003G309200 Sobic009G180500--Sobic003G309200 Sobic009G180500--Sobic009G231200 Sobic009G180500--Sobic002G293300 Sobic009G200800 Sobic009G200800 Sobic009G180500--Sobic009G200800 Sobic009G180500--Sobic003G002400 Sobic009G180500--Sobic001G426800 Sobic001G031600 Sobic001G031600 Sobic009G180500--Sobic001G031600 Sobic009G180500--Sobic003G238000 Sobic009G180500--Sobic001G358300 Sobic001G516100 Sobic001G516100 Sobic001G103200--Sobic001G516100 Sobic001G103200--Sobic001G358300 Sobic001G103200--Sobic004G271700 Sobic001G510700 Sobic001G510700 Sobic001G103200--Sobic001G510700 Sobic009G135100 Sobic009G135100 Sobic001G103200--Sobic009G135100 Sobic009G219900 Sobic009G219900 Sobic001G103200--Sobic009G219900 Sobic001G103200--Sobic004G350300 Sobic001G350900 Sobic001G350900 Sobic001G103200--Sobic001G350900 Sobic001G103200--Sobic003G002400 Sobic003G367300 Sobic003G367300 Sobic002G293300--Sobic003G367300 Sobic002G293300--Sobic001G436000 Sobic002G293300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G293300--Sobic010G052800 Sobic002G293300--Sobic009G231200 Sobic002G330300 Sobic002G330300 Sobic002G293300--Sobic002G330300 Sobic001G082900 Sobic001G082900 Sobic002G293300--Sobic001G082900 Sobic004G025000 Sobic004G025000 Sobic002G293300--Sobic004G025000 Sobic002G293300--Sobic001G516100
Octagon: transcription factors


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