Gene annotation
Transcriptome id Sobic.002G388400.1
Synonym Sb02g040450,
Functional annotation Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (PubMedID : 26465154)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
haloacid dehalogenase-like hydrolase family protein, putative, expressed
UniProt C5X396
Pfam PF13419
Panther DB PTHR12725 PTHR12725:SF70
NCBI CDD KOG3109; Haloacid dehalogenase-like hydrolase
KEGG Orthology K18551; pyrimidine and pyridine-specific 5'-nucleotidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G62040 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
RAP-DB (Rice) LOC_Os07g44060.1 : haloacid dehalogenase-like hydrolase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048885
Brachypodium KQK15039 , KQK15040
Barley HORVU2Hr1G027680.11 , HORVU2Hr1G027680.10 , HORVU2Hr1G027680.12 , HORVU2Hr1G027680.1 , HORVU2Hr1G027680.2 , HORVU2Hr1G027680.4 , HORVU2Hr1G027680.9 , HORVU2Hr1G027680.8 , HORVU2Hr1G027680.3 , HORVU2Hr1G027680.5 , HORVU2Hr1G027680.6
Wheat TraesCS2A02G153300 , TraesCS2B02G178400 , TraesCS2B02G178400 , TraesCS2D02G158600 , TraesCS4A02G359100 , TraesCS5D02G514100 , TraesCS2A02G153300 , TraesCS5B02G513600
Populus -


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cDNA sequences
Sobic.002G388400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G032900 expressed protein -
2 Sobic.003G238000 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
3 Sobic.004G059900 bZIP transcription factor domain containing protein, expressed -
4 Sobic.001G082900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
5 Sobic.001G446200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@clathrin adaptor complex small chain domain containing protein, expressed K12399: AP-3 complex subunit sigma
6 Sobic.001G442900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.001G460300 expressed protein -
8 Sobic.001G080300 peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.004G278200 DUF581 domain containing protein, expressed -
10 Sobic.009G200800 protein kinase domain containing protein, expressed -
11 Sobic.002G397600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
12 Sobic.009G073000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsGrx_C15 - glutaredoxin subgroup III, expressed -
13 Sobic.002G125300 up-regulated by silicon application(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
14 Sobic.005G121200 "similar to HVA22-like protein e, putative, expressed"(PubMedID : 29862293)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
15 Sobic.009G231200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein of unknown function DUF1421 domain containing protein, expressed -
16 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
17 Sobic.007G137600 NADP-dependent malate dehydrogenase(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
18 Sobic.001G243000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote
19 Sobic.006G150400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase


Gene co-expression network
sample Sobic002G388400 Sobic002G388400 Sobic003G032900 Sobic003G032900 Sobic002G388400--Sobic003G032900 Sobic003G238000 Sobic003G238000 Sobic002G388400--Sobic003G238000 Sobic004G059900 Sobic004G059900 Sobic002G388400--Sobic004G059900 Sobic001G082900 Sobic001G082900 Sobic002G388400--Sobic001G082900 Sobic001G446200 Sobic001G446200 Sobic002G388400--Sobic001G446200 Sobic001G442900 Sobic001G442900 Sobic002G388400--Sobic001G442900 Sobic001G460300 Sobic001G460300 Sobic002G388400--Sobic001G460300 Sobic001G080300 Sobic001G080300 Sobic002G388400--Sobic001G080300 Sobic004G278200 Sobic004G278200 Sobic002G388400--Sobic004G278200 Sobic001G063600 Sobic001G063600 Sobic003G032900--Sobic001G063600 Sobic003G032900--Sobic004G278200 Sobic002G427400 Sobic002G427400 Sobic003G032900--Sobic002G427400 Sobic008G159100 Sobic008G159100 Sobic003G032900--Sobic008G159100 Sobic003G032900--Sobic001G080300 Sobic001G476400 Sobic001G476400 Sobic003G032900--Sobic001G476400 Sobic003G373150 Sobic003G373150 Sobic003G032900--Sobic003G373150 Sobic010G080400 Sobic010G080400 Sobic003G032900--Sobic010G080400 Sobic004G025000 Sobic004G025000 Sobic003G032900--Sobic004G025000 Sobic002G293300 Sobic002G293300 Sobic003G238000--Sobic002G293300 Sobic003G238000--Sobic004G059900 Sobic001G436000 Sobic001G436000 Sobic003G238000--Sobic001G436000 Sobic001G523200 Sobic001G523200 Sobic003G238000--Sobic001G523200 Sobic003G238000--Sobic003G032900 Sobic001G358300 Sobic001G358300 Sobic003G238000--Sobic001G358300 Sobic009G180500 Sobic009G180500 Sobic003G238000--Sobic009G180500 Sobic007G140900 Sobic007G140900 Sobic003G238000--Sobic007G140900 Sobic002G379400 Sobic002G379400 Sobic003G238000--Sobic002G379400 Sobic004G059900--Sobic001G358300 Sobic004G059900--Sobic003G238000 Sobic002G343300 Sobic002G343300 Sobic004G059900--Sobic002G343300 Sobic001G311100 Sobic001G311100 Sobic004G059900--Sobic001G311100 Sobic007G216500 Sobic007G216500 Sobic004G059900--Sobic007G216500 Sobic004G059900--Sobic002G293300 Sobic001G415000 Sobic001G415000 Sobic004G059900--Sobic001G415000 Sobic009G231200 Sobic009G231200 Sobic004G059900--Sobic009G231200 Sobic002G397600 Sobic002G397600 Sobic004G059900--Sobic002G397600 Sobic001G082900--Sobic002G293300 Sobic001G082900--Sobic009G231200 Sobic001G082900--Sobic001G436000 Sobic001G082900--Sobic003G238000 Sobic001G082900--Sobic007G140900 Sobic001G420100 Sobic001G420100 Sobic001G082900--Sobic001G420100 Sobic001G082900--Sobic004G059900 Sobic001G082900--Sobic003G032900 Sobic003G034700 Sobic003G034700 Sobic001G082900--Sobic003G034700 Sobic008G152600 Sobic008G152600 Sobic001G446200--Sobic008G152600 Sobic003G354900 Sobic003G354900 Sobic001G446200--Sobic003G354900 Sobic008G047400 Sobic008G047400 Sobic001G446200--Sobic008G047400 Sobic004G255700 Sobic004G255700 Sobic001G446200--Sobic004G255700 Sobic001G193300 Sobic001G193300 Sobic001G446200--Sobic001G193300 Sobic009G200800 Sobic009G200800 Sobic001G446200--Sobic009G200800 Sobic008G140100 Sobic008G140100 Sobic001G446200--Sobic008G140100 Sobic007G164000 Sobic007G164000 Sobic001G446200--Sobic007G164000 Sobic003G051000 Sobic003G051000 Sobic001G446200--Sobic003G051000 Sobic004G321000 Sobic004G321000 Sobic001G442900--Sobic004G321000 Sobic001G442900--Sobic004G278200 Sobic001G416600 Sobic001G416600 Sobic001G442900--Sobic001G416600 Sobic001G442900--Sobic003G032900 Sobic009G231400 Sobic009G231400 Sobic001G442900--Sobic009G231400 Sobic001G243000 Sobic001G243000 Sobic001G442900--Sobic001G243000 Sobic009G163900 Sobic009G163900 Sobic001G442900--Sobic009G163900 Sobic001G442900--Sobic003G373150 Sobic003G144600 Sobic003G144600 Sobic001G442900--Sobic003G144600 Sobic003G278700 Sobic003G278700 Sobic001G460300--Sobic003G278700 Sobic001G460300--Sobic003G032900 Sobic009G099000 Sobic009G099000 Sobic001G460300--Sobic009G099000 Sobic005G121200 Sobic005G121200 Sobic001G460300--Sobic005G121200 Sobic001G157400 Sobic001G157400 Sobic001G460300--Sobic001G157400 Sobic003G227600 Sobic003G227600 Sobic001G460300--Sobic003G227600 Sobic002G337800 Sobic002G337800 Sobic001G460300--Sobic002G337800 Sobic009G216900 Sobic009G216900 Sobic001G460300--Sobic009G216900 Sobic002G325900 Sobic002G325900 Sobic001G460300--Sobic002G325900 Sobic001G080300--Sobic002G427400 Sobic001G080300--Sobic004G278200 Sobic007G166900 Sobic007G166900 Sobic001G080300--Sobic007G166900 Sobic001G080300--Sobic008G159100 Sobic001G080300--Sobic003G032900 Sobic001G080300--Sobic010G080400 Sobic001G080300--Sobic001G063600 Sobic001G080300--Sobic003G373150 Sobic005G115800 Sobic005G115800 Sobic001G080300--Sobic005G115800 Sobic004G278200--Sobic003G373150 Sobic004G278200--Sobic007G166900 Sobic006G055600 Sobic006G055600 Sobic004G278200--Sobic006G055600 Sobic004G278200--Sobic001G080300 Sobic004G278200--Sobic002G427400 Sobic004G278200--Sobic004G321000 Sobic004G278200--Sobic001G063600 Sobic004G278200--Sobic003G032900 Sobic004G283201 Sobic004G283201 Sobic004G278200--Sobic004G283201
Octagon: transcription factors


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