Gene annotation
Transcriptome id Sobic.004G307600.1
Synonym ROL5, Sb04g034030
Functional annotation ATP-binding domain-containing protein, putative, expressed
UniProt C5XST3
Pfam PF01171 PF16503
Panther DB PTHR11807 PTHR11807:SF12
NCBI CDD KOG2840; Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily
KEGG Orthology K14168; CTU1, cytoplasmic tRNA 2-thiolation protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G44270 : repressor of lrx1
RAP-DB (Rice) LOC_Os02g52470.1 : ATP-binding domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022206
Brachypodium KQK01773
Barley HORVU5Hr1G061960.5 , HORVU5Hr1G061960.4 , HORVU5Hr1G061960.7 , HORVU5Hr1G061960.6 , HORVU5Hr1G061960.1 , HORVU5Hr1G061960.3 , HORVU5Hr1G061960.2 , HORVU5Hr1G061960.8
Wheat TraesCS5A02G214500 , TraesCS5D02G217500 , TraesCS5B02G209300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G235200 oral cancer overexpressed protein 1, putative, expressed -
2 Sobic.004G202500 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
3 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
4 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
5 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
6 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
7 Sobic.002G117400 expressed protein -
8 Sobic.007G093800 expressed protein -
9 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
10 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
11 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
12 Sobic.003G102400 expressed protein -
13 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
14 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
15 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -
16 Sobic.009G068500 expressed protein -
17 Sobic.004G310500 ybaK/prolyl-tRNA synthetase family protein, putative, expressed -
18 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
19 Sobic.006G034500 elongation factor Tu, putative, expressed K03267: ERF3, peptide chain release factor subunit 3
20 Sobic.001G261436 - -


Gene co-expression network
sample Sobic004G307600 Sobic004G307600 Sobic010G235200 Sobic010G235200 Sobic004G307600--Sobic010G235200 Sobic004G202500 Sobic004G202500 Sobic004G307600--Sobic004G202500 Sobic002G303600 Sobic002G303600 Sobic004G307600--Sobic002G303600 Sobic009G192000 Sobic009G192000 Sobic004G307600--Sobic009G192000 Sobic008G124900 Sobic008G124900 Sobic004G307600--Sobic008G124900 Sobic006G180000 Sobic006G180000 Sobic004G307600--Sobic006G180000 Sobic002G117400 Sobic002G117400 Sobic004G307600--Sobic002G117400 Sobic007G093800 Sobic007G093800 Sobic004G307600--Sobic007G093800 Sobic010G223300 Sobic010G223300 Sobic004G307600--Sobic010G223300 Sobic010G235200--Sobic004G307600 Sobic004G228800 Sobic004G228800 Sobic010G235200--Sobic004G228800 Sobic010G235200--Sobic007G093800 Sobic010G264000 Sobic010G264000 Sobic010G235200--Sobic010G264000 Sobic010G235200--Sobic008G124900 Sobic004G323700 Sobic004G323700 Sobic010G235200--Sobic004G323700 Sobic009G131900 Sobic009G131900 Sobic010G235200--Sobic009G131900 Sobic010G235200--Sobic002G303600 Sobic003G312200 Sobic003G312200 Sobic010G235200--Sobic003G312200 Sobic004G066200 Sobic004G066200 Sobic004G202500--Sobic004G066200 Sobic010G278200 Sobic010G278200 Sobic004G202500--Sobic010G278200 Sobic003G099100 Sobic003G099100 Sobic004G202500--Sobic003G099100 Sobic004G202500--Sobic008G124900 Sobic001G193300 Sobic001G193300 Sobic004G202500--Sobic001G193300 Sobic006G101700 Sobic006G101700 Sobic004G202500--Sobic006G101700 Sobic001G007000 Sobic001G007000 Sobic004G202500--Sobic001G007000 Sobic004G202500--Sobic007G093800 Sobic010G130000 Sobic010G130000 Sobic004G202500--Sobic010G130000 Sobic010G261600 Sobic010G261600 Sobic002G303600--Sobic010G261600 Sobic002G303600--Sobic004G323700 Sobic004G178200 Sobic004G178200 Sobic002G303600--Sobic004G178200 Sobic002G303600--Sobic006G180000 Sobic007G218000 Sobic007G218000 Sobic002G303600--Sobic007G218000 Sobic004G028100 Sobic004G028100 Sobic002G303600--Sobic004G028100 Sobic003G422900 Sobic003G422900 Sobic002G303600--Sobic003G422900 Sobic009G092400 Sobic009G092400 Sobic002G303600--Sobic009G092400 Sobic004G003401 Sobic004G003401 Sobic002G303600--Sobic004G003401 Sobic001G031100 Sobic001G031100 Sobic009G192000--Sobic001G031100 Sobic007G167900 Sobic007G167900 Sobic009G192000--Sobic007G167900 Sobic010G020400 Sobic010G020400 Sobic009G192000--Sobic010G020400 Sobic003G349300 Sobic003G349300 Sobic009G192000--Sobic003G349300 Sobic001G014800 Sobic001G014800 Sobic009G192000--Sobic001G014800 Sobic003G338500 Sobic003G338500 Sobic009G192000--Sobic003G338500 Sobic009G192000--Sobic006G180000 Sobic010G205300 Sobic010G205300 Sobic009G192000--Sobic010G205300 Sobic003G374000 Sobic003G374000 Sobic009G192000--Sobic003G374000 Sobic008G124900--Sobic007G093800 Sobic003G119700 Sobic003G119700 Sobic008G124900--Sobic003G119700 Sobic006G033200 Sobic006G033200 Sobic008G124900--Sobic006G033200 Sobic001G096000 Sobic001G096000 Sobic008G124900--Sobic001G096000 Sobic008G124900--Sobic010G278200 Sobic006G131000 Sobic006G131000 Sobic008G124900--Sobic006G131000 Sobic003G104000 Sobic003G104000 Sobic008G124900--Sobic003G104000 Sobic010G249100 Sobic010G249100 Sobic008G124900--Sobic010G249100 Sobic009G068500 Sobic009G068500 Sobic008G124900--Sobic009G068500 Sobic006G180000--Sobic002G303600 Sobic002G047700 Sobic002G047700 Sobic006G180000--Sobic002G047700 Sobic003G264100 Sobic003G264100 Sobic006G180000--Sobic003G264100 Sobic006G180000--Sobic010G223300 Sobic006G180000--Sobic009G092400 Sobic006G180000--Sobic001G007000 Sobic006G180000--Sobic010G020400 Sobic004G092500 Sobic004G092500 Sobic006G180000--Sobic004G092500 Sobic006G180000--Sobic004G028100 Sobic002G117400--Sobic004G323700 Sobic002G117400--Sobic007G093800 Sobic002G117400--Sobic007G167900 Sobic002G117400--Sobic010G020400 Sobic002G117400--Sobic002G303600 Sobic002G008800 Sobic002G008800 Sobic002G117400--Sobic002G008800 Sobic008G083200 Sobic008G083200 Sobic002G117400--Sobic008G083200 Sobic010G020300 Sobic010G020300 Sobic002G117400--Sobic010G020300 Sobic002G117400--Sobic009G192000 Sobic007G093800--Sobic008G124900 Sobic007G093800--Sobic006G131000 Sobic007G093800--Sobic004G178200 Sobic007G093800--Sobic009G068500 Sobic008G046500 Sobic008G046500 Sobic007G093800--Sobic008G046500 Sobic007G093800--Sobic010G278200 Sobic007G093800--Sobic003G264100 Sobic007G093800--Sobic004G092500 Sobic007G093800--Sobic007G218000 Sobic008G055900 Sobic008G055900 Sobic010G223300--Sobic008G055900 Sobic001G449900 Sobic001G449900 Sobic010G223300--Sobic001G449900 Sobic002G020700 Sobic002G020700 Sobic010G223300--Sobic002G020700 Sobic010G223300--Sobic003G338500 Sobic006G260500 Sobic006G260500 Sobic010G223300--Sobic006G260500 Sobic010G223300--Sobic004G092500 Sobic010G223300--Sobic010G020400 Sobic010G223300--Sobic002G008800 Sobic010G223300--Sobic006G180000
Octagon: transcription factors


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