Gene annotation
Transcriptome id Sobic.002G392600.2,Sobic.002G392600.1
Synonym Sb02g040800
Functional annotation zinc finger CCHC domain-containing protein 10, putative, expressed
UniProt A0A1B6QFX2
Pfam PF13917
Panther DB PTHR13491
NCBI CDD KOG3116; Predicted C3H1-type Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G49400 : zinc knuckle (CCHC-type) family protein
RAP-DB (Rice) LOC_Os11g09310.1 : zinc finger CCHC domain-containing protein 10, putative, expressed
MaizeGDB (Corn) Zm00025a016961 , Zm00025a015265 , Zm00025a011004 , Zm00025a012765 , Zm00025a048932
Brachypodium KQK17368 , KQK17369 , KQK14980
Barley HORVU7Hr1G097780.1 , HORVU7Hr1G097780.2
Wheat -
Populus -


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cDNA sequences
Sobic.002G392600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
2 Sobic.003G437500 syntaxin 6, putative, expressed -
3 Sobic.005G162600 zinc knuckle domain containing protein, expressed -
4 Sobic.003G074000 expressed protein K12593: MPHOSPH6, M-phase phosphoprotein 6, animal type
5 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
6 Sobic.001G039700 transcription elongation factor protein, putative, expressed K03145: transcription elongation factor S-II
7 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
8 Sobic.007G007900 mago nashi, putative, expressed K12877: protein mago nashi
9 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
10 Sobic.001G056200 expressed protein -
11 Sobic.001G221100 ubiquitin family protein, putative, expressed K08770: ubiquitin C
12 Sobic.003G093600 methyltransferase, putative, expressed -
13 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
14 Sobic.004G015800 zinc carboxypeptidase family protein, putative, expressed -
15 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
16 Sobic.010G199800 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
17 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
18 Sobic.010G042900 expressed protein -
19 Sobic.009G032300 CGMC_GSK.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
20 Sobic.001G179000 DNA-directed RNA polymerase subunit, putative, expressed K03014: RPB6, DNA-directed RNA polymerases I, II, and III subunit RPABC2


Gene co-expression network
sample Sobic002G392600 Sobic002G392600 Sobic004G263900 Sobic004G263900 Sobic002G392600--Sobic004G263900 Sobic003G437500 Sobic003G437500 Sobic002G392600--Sobic003G437500 Sobic005G162600 Sobic005G162600 Sobic002G392600--Sobic005G162600 Sobic003G074000 Sobic003G074000 Sobic002G392600--Sobic003G074000 Sobic001G149700 Sobic001G149700 Sobic002G392600--Sobic001G149700 Sobic001G039700 Sobic001G039700 Sobic002G392600--Sobic001G039700 Sobic006G257900 Sobic006G257900 Sobic002G392600--Sobic006G257900 Sobic007G007900 Sobic007G007900 Sobic002G392600--Sobic007G007900 Sobic007G063200 Sobic007G063200 Sobic002G392600--Sobic007G063200 Sobic010G055500 Sobic010G055500 Sobic004G263900--Sobic010G055500 Sobic010G071200 Sobic010G071200 Sobic004G263900--Sobic010G071200 Sobic001G056200 Sobic001G056200 Sobic004G263900--Sobic001G056200 Sobic003G359300 Sobic003G359300 Sobic004G263900--Sobic003G359300 Sobic008G174300 Sobic008G174300 Sobic004G263900--Sobic008G174300 Sobic004G263900--Sobic007G063200 Sobic010G260500 Sobic010G260500 Sobic004G263900--Sobic010G260500 Sobic001G028400 Sobic001G028400 Sobic004G263900--Sobic001G028400 Sobic002G084300 Sobic002G084300 Sobic004G263900--Sobic002G084300 Sobic003G437500--Sobic001G028400 Sobic003G437500--Sobic001G056200 Sobic006G088100 Sobic006G088100 Sobic003G437500--Sobic006G088100 Sobic003G202800 Sobic003G202800 Sobic003G437500--Sobic003G202800 Sobic006G092800 Sobic006G092800 Sobic003G437500--Sobic006G092800 Sobic004G013600 Sobic004G013600 Sobic003G437500--Sobic004G013600 Sobic007G088900 Sobic007G088900 Sobic003G437500--Sobic007G088900 Sobic003G437500--Sobic004G263900 Sobic003G437500--Sobic003G359300 Sobic001G222300 Sobic001G222300 Sobic005G162600--Sobic001G222300 Sobic008G116500 Sobic008G116500 Sobic005G162600--Sobic008G116500 Sobic008G101800 Sobic008G101800 Sobic005G162600--Sobic008G101800 Sobic001G439500 Sobic001G439500 Sobic005G162600--Sobic001G439500 Sobic003G093600 Sobic003G093600 Sobic005G162600--Sobic003G093600 Sobic007G008800 Sobic007G008800 Sobic005G162600--Sobic007G008800 Sobic006G129700 Sobic006G129700 Sobic005G162600--Sobic006G129700 Sobic007G037100 Sobic007G037100 Sobic005G162600--Sobic007G037100 Sobic003G204000 Sobic003G204000 Sobic005G162600--Sobic003G204000 Sobic010G269600 Sobic010G269600 Sobic003G074000--Sobic010G269600 Sobic002G272800 Sobic002G272800 Sobic003G074000--Sobic002G272800 Sobic003G074000--Sobic005G162600 Sobic001G309100 Sobic001G309100 Sobic003G074000--Sobic001G309100 Sobic002G362300 Sobic002G362300 Sobic003G074000--Sobic002G362300 Sobic003G074000--Sobic003G359300 Sobic003G074000--Sobic007G063200 Sobic003G074000--Sobic003G437500 Sobic002G095700 Sobic002G095700 Sobic003G074000--Sobic002G095700 Sobic001G149700--Sobic010G071200 Sobic001G149700--Sobic010G055500 Sobic004G231400 Sobic004G231400 Sobic001G149700--Sobic004G231400 Sobic001G478300 Sobic001G478300 Sobic001G149700--Sobic001G478300 Sobic001G149700--Sobic006G257900 Sobic008G142700 Sobic008G142700 Sobic001G149700--Sobic008G142700 Sobic003G273100 Sobic003G273100 Sobic001G149700--Sobic003G273100 Sobic001G076000 Sobic001G076000 Sobic001G149700--Sobic001G076000 Sobic001G512900 Sobic001G512900 Sobic001G149700--Sobic001G512900 Sobic008G034600 Sobic008G034600 Sobic001G039700--Sobic008G034600 Sobic004G271900 Sobic004G271900 Sobic001G039700--Sobic004G271900 Sobic001G039700--Sobic001G056200 Sobic003G440700 Sobic003G440700 Sobic001G039700--Sobic003G440700 Sobic009G022200 Sobic009G022200 Sobic001G039700--Sobic009G022200 Sobic002G421700 Sobic002G421700 Sobic001G039700--Sobic002G421700 Sobic004G061900 Sobic004G061900 Sobic001G039700--Sobic004G061900 Sobic001G221100 Sobic001G221100 Sobic001G039700--Sobic001G221100 Sobic001G039700--Sobic003G359300 Sobic006G257900--Sobic010G071200 Sobic006G257900--Sobic001G149700 Sobic006G257900--Sobic001G478300 Sobic010G154150 Sobic010G154150 Sobic006G257900--Sobic010G154150 Sobic006G257900--Sobic007G063200 Sobic006G257900--Sobic004G231400 Sobic006G257900--Sobic010G055500 Sobic004G188300 Sobic004G188300 Sobic006G257900--Sobic004G188300 Sobic004G164500 Sobic004G164500 Sobic006G257900--Sobic004G164500 Sobic001G428400 Sobic001G428400 Sobic007G007900--Sobic001G428400 Sobic003G045400 Sobic003G045400 Sobic007G007900--Sobic003G045400 Sobic003G142700 Sobic003G142700 Sobic007G007900--Sobic003G142700 Sobic001G429400 Sobic001G429400 Sobic007G007900--Sobic001G429400 Sobic007G007900--Sobic010G055500 Sobic006G038400 Sobic006G038400 Sobic007G007900--Sobic006G038400 Sobic007G007900--Sobic002G392600 Sobic007G007900--Sobic001G149700 Sobic010G000700 Sobic010G000700 Sobic007G007900--Sobic010G000700 Sobic007G063200--Sobic004G263900 Sobic007G063200--Sobic001G028400 Sobic007G063200--Sobic003G359300 Sobic010G033400 Sobic010G033400 Sobic007G063200--Sobic010G033400 Sobic007G063200--Sobic010G071200 Sobic003G026300 Sobic003G026300 Sobic007G063200--Sobic003G026300 Sobic007G063200--Sobic010G055500 Sobic007G063200--Sobic006G257900 Sobic007G063200--Sobic008G142700
Octagon: transcription factors


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