Gene annotation
Transcriptome id Sobic.001G039700.1
Synonym Sb01g003660, TFIIS
Functional annotation transcription elongation factor protein, putative, expressed
UniProt C5WV62
Pfam PF08711 PF01096 PF07500
Panther DB PTHR11477
NCBI CDD KOG1105; Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1
KEGG Orthology K03145; transcription elongation factor S-II
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0008270zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G38560 : transcript elongation factor IIS
RAP-DB (Rice) LOC_Os03g60130.2 : transcription elongation factor protein, putative, expressed
MaizeGDB (Corn) Zm00025a016458 , Zm00025a008747
Brachypodium KQK12502
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G039700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
2 Sobic.004G271900 RMD5 homolog A, putative, expressed -
3 Sobic.001G056200 expressed protein -
4 Sobic.003G440700 leucine rich repeat domain containing protein, putative, expressed -
5 Sobic.009G022200 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
6 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
7 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
8 Sobic.001G221100 ubiquitin family protein, putative, expressed K08770: ubiquitin C
9 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
10 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
11 Sobic.003G239900 ketol-acid reductoisomerase, chloroplast precursor, putative, expressed K00053: ketol-acid reductoisomerase
12 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
13 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
14 Sobic.009G117300 protein kinase APK1B, chloroplast precursor, putative, expressed -
15 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
16 Sobic.003G093600 methyltransferase, putative, expressed -
17 Sobic.001G428400 - K12826: SF3A2, splicing factor 3A subunit 2
18 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
19 Sobic.006G129700 amine oxidase, flavin-containing, domain containing protein, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
20 Sobic.009G117400 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic001G039700 Sobic001G039700 Sobic008G034600 Sobic008G034600 Sobic001G039700--Sobic008G034600 Sobic004G271900 Sobic004G271900 Sobic001G039700--Sobic004G271900 Sobic001G056200 Sobic001G056200 Sobic001G039700--Sobic001G056200 Sobic003G440700 Sobic003G440700 Sobic001G039700--Sobic003G440700 Sobic009G022200 Sobic009G022200 Sobic001G039700--Sobic009G022200 Sobic002G421700 Sobic002G421700 Sobic001G039700--Sobic002G421700 Sobic004G061900 Sobic004G061900 Sobic001G039700--Sobic004G061900 Sobic001G221100 Sobic001G221100 Sobic001G039700--Sobic001G221100 Sobic003G359300 Sobic003G359300 Sobic001G039700--Sobic003G359300 Sobic007G205800 Sobic007G205800 Sobic008G034600--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic008G034600--Sobic007G011400 Sobic010G263800 Sobic010G263800 Sobic008G034600--Sobic010G263800 Sobic008G034600--Sobic004G271900 Sobic008G117200 Sobic008G117200 Sobic008G034600--Sobic008G117200 Sobic008G034600--Sobic002G421700 Sobic008G034600--Sobic009G022200 Sobic007G224900 Sobic007G224900 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000 Sobic009G117400 Sobic009G117400 Sobic004G271900--Sobic009G117400 Sobic004G271900--Sobic007G205800 Sobic004G271900--Sobic008G034600 Sobic004G271900--Sobic010G263800 Sobic003G093600 Sobic003G093600 Sobic004G271900--Sobic003G093600 Sobic004G256600 Sobic004G256600 Sobic004G271900--Sobic004G256600 Sobic004G271900--Sobic007G011400 Sobic003G258400 Sobic003G258400 Sobic004G271900--Sobic003G258400 Sobic009G117300 Sobic009G117300 Sobic004G271900--Sobic009G117300 Sobic002G084300 Sobic002G084300 Sobic001G056200--Sobic002G084300 Sobic004G263900 Sobic004G263900 Sobic001G056200--Sobic004G263900 Sobic001G408700 Sobic001G408700 Sobic001G056200--Sobic001G408700 Sobic004G013600 Sobic004G013600 Sobic001G056200--Sobic004G013600 Sobic001G028400 Sobic001G028400 Sobic001G056200--Sobic001G028400 Sobic003G437500 Sobic003G437500 Sobic001G056200--Sobic003G437500 Sobic006G088100 Sobic006G088100 Sobic001G056200--Sobic006G088100 Sobic004G007300 Sobic004G007300 Sobic001G056200--Sobic004G007300 Sobic008G174300 Sobic008G174300 Sobic001G056200--Sobic008G174300 Sobic003G440700--Sobic008G034600 Sobic006G128900 Sobic006G128900 Sobic003G440700--Sobic006G128900 Sobic003G440700--Sobic001G039700 Sobic003G440700--Sobic004G271900 Sobic001G094000 Sobic001G094000 Sobic003G440700--Sobic001G094000 Sobic003G440700--Sobic002G421700 Sobic001G090400 Sobic001G090400 Sobic003G440700--Sobic001G090400 Sobic003G440700--Sobic009G117400 Sobic003G440700--Sobic007G011400 Sobic009G022200--Sobic007G011400 Sobic009G022200--Sobic007G205800 Sobic009G022200--Sobic003G093600 Sobic009G022200--Sobic008G034600 Sobic004G211400 Sobic004G211400 Sobic009G022200--Sobic004G211400 Sobic009G087800 Sobic009G087800 Sobic009G022200--Sobic009G087800 Sobic009G022200--Sobic004G271900 Sobic008G116500 Sobic008G116500 Sobic009G022200--Sobic008G116500 Sobic009G022200--Sobic003G258400 Sobic002G421700--Sobic008G034600 Sobic002G421700--Sobic008G117200 Sobic001G454301 Sobic001G454301 Sobic002G421700--Sobic001G454301 Sobic002G061400 Sobic002G061400 Sobic002G421700--Sobic002G061400 Sobic005G015900 Sobic005G015900 Sobic002G421700--Sobic005G015900 Sobic008G129700 Sobic008G129700 Sobic002G421700--Sobic008G129700 Sobic007G116400 Sobic007G116400 Sobic002G421700--Sobic007G116400 Sobic002G421700--Sobic001G094000 Sobic006G217200 Sobic006G217200 Sobic002G421700--Sobic006G217200 Sobic007G191100 Sobic007G191100 Sobic004G061900--Sobic007G191100 Sobic004G061900--Sobic008G129700 Sobic006G129700 Sobic006G129700 Sobic004G061900--Sobic006G129700 Sobic004G061900--Sobic008G117200 Sobic009G030300 Sobic009G030300 Sobic004G061900--Sobic009G030300 Sobic004G345700 Sobic004G345700 Sobic004G061900--Sobic004G345700 Sobic002G177400 Sobic002G177400 Sobic004G061900--Sobic002G177400 Sobic004G061900--Sobic001G094000 Sobic004G027100 Sobic004G027100 Sobic004G061900--Sobic004G027100 Sobic001G221100--Sobic001G039700 Sobic009G032300 Sobic009G032300 Sobic001G221100--Sobic009G032300 Sobic010G042900 Sobic010G042900 Sobic001G221100--Sobic010G042900 Sobic003G145900 Sobic003G145900 Sobic001G221100--Sobic003G145900 Sobic001G221100--Sobic004G027100 Sobic004G034400 Sobic004G034400 Sobic001G221100--Sobic004G034400 Sobic004G330900 Sobic004G330900 Sobic001G221100--Sobic004G330900 Sobic005G014950 Sobic005G014950 Sobic001G221100--Sobic005G014950 Sobic002G197100 Sobic002G197100 Sobic001G221100--Sobic002G197100 Sobic010G033400 Sobic010G033400 Sobic003G359300--Sobic010G033400 Sobic003G359300--Sobic004G263900 Sobic003G248500 Sobic003G248500 Sobic003G359300--Sobic003G248500 Sobic007G063200 Sobic007G063200 Sobic003G359300--Sobic007G063200 Sobic003G359300--Sobic001G028400 Sobic003G359300--Sobic008G174300 Sobic003G359300--Sobic001G056200 Sobic002G365100 Sobic002G365100 Sobic003G359300--Sobic002G365100 Sobic002G058300 Sobic002G058300 Sobic003G359300--Sobic002G058300
Octagon: transcription factors


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