Gene annotation
Transcriptome id Sobic.003G440700.1
Synonym Sb03g047040
Functional annotation leucine rich repeat domain containing protein, putative, expressed
UniProt C5XJA7
Pfam -
Panther DB PTHR24365 PTHR24365:SF276
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G22320 : Leucine-rich repeat (LRR) family protein
RAP-DB (Rice) LOC_Os01g73560.1 : leucine rich repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a025862
Brachypodium KQK11709
Barley HORVU3Hr1G113080.6 , HORVU3Hr1G113080.4 , HORVU3Hr1G113080.1 , HORVU3Hr1G113080.8 , HORVU3Hr1G113080.9 , HORVU3Hr1G113080.10 , HORVU3Hr1G113080.11
Wheat TraesCS3D02G524400 , TraesCS3A02G516700 , TraesCSU02G053400
Populus -


JBrowse

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cDNA sequences
Sobic.003G440700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
2 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
3 Sobic.001G039700 transcription elongation factor protein, putative, expressed K03145: transcription elongation factor S-II
4 Sobic.004G271900 RMD5 homolog A, putative, expressed -
5 Sobic.001G094000 expressed protein -
6 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
7 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
8 Sobic.009G117400 protein kinase domain containing protein, expressed -
9 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
10 Sobic.005G015900 dnaJ domain containing protein, expressed -
11 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
12 Sobic.006G246900 expressed protein -
13 Sobic.009G117300 protein kinase APK1B, chloroplast precursor, putative, expressed -
14 Sobic.003G422300 recA protein, expressed K03553: recombination protein RecA
15 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
16 Sobic.005G133500 expressed protein -
17 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
18 Sobic.006G145000 disease resistance RPP13-like protein 1, putative, expressed -
19 Sobic.003G239900 ketol-acid reductoisomerase, chloroplast precursor, putative, expressed K00053: ketol-acid reductoisomerase
20 Sobic.005G015100 OsFBX291 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic003G440700 Sobic003G440700 Sobic008G034600 Sobic008G034600 Sobic003G440700--Sobic008G034600 Sobic006G128900 Sobic006G128900 Sobic003G440700--Sobic006G128900 Sobic001G039700 Sobic001G039700 Sobic003G440700--Sobic001G039700 Sobic004G271900 Sobic004G271900 Sobic003G440700--Sobic004G271900 Sobic001G094000 Sobic001G094000 Sobic003G440700--Sobic001G094000 Sobic002G421700 Sobic002G421700 Sobic003G440700--Sobic002G421700 Sobic001G090400 Sobic001G090400 Sobic003G440700--Sobic001G090400 Sobic009G117400 Sobic009G117400 Sobic003G440700--Sobic009G117400 Sobic007G011400 Sobic007G011400 Sobic003G440700--Sobic007G011400 Sobic007G205800 Sobic007G205800 Sobic008G034600--Sobic007G205800 Sobic008G034600--Sobic007G011400 Sobic010G263800 Sobic010G263800 Sobic008G034600--Sobic010G263800 Sobic008G034600--Sobic004G271900 Sobic008G117200 Sobic008G117200 Sobic008G034600--Sobic008G117200 Sobic008G034600--Sobic002G421700 Sobic009G022200 Sobic009G022200 Sobic008G034600--Sobic009G022200 Sobic007G224900 Sobic007G224900 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000 Sobic006G209850 Sobic006G209850 Sobic006G128900--Sobic006G209850 Sobic001G511500 Sobic001G511500 Sobic006G128900--Sobic001G511500 Sobic004G031700 Sobic004G031700 Sobic006G128900--Sobic004G031700 Sobic009G000500 Sobic009G000500 Sobic006G128900--Sobic009G000500 Sobic006G128900--Sobic001G090400 Sobic003G445400 Sobic003G445400 Sobic006G128900--Sobic003G445400 Sobic003G268300 Sobic003G268300 Sobic006G128900--Sobic003G268300 Sobic001G477800 Sobic001G477800 Sobic006G128900--Sobic001G477800 Sobic002G157000 Sobic002G157000 Sobic006G128900--Sobic002G157000 Sobic001G039700--Sobic008G034600 Sobic001G039700--Sobic004G271900 Sobic001G056200 Sobic001G056200 Sobic001G039700--Sobic001G056200 Sobic001G039700--Sobic003G440700 Sobic001G039700--Sobic009G022200 Sobic001G039700--Sobic002G421700 Sobic004G061900 Sobic004G061900 Sobic001G039700--Sobic004G061900 Sobic001G221100 Sobic001G221100 Sobic001G039700--Sobic001G221100 Sobic003G359300 Sobic003G359300 Sobic001G039700--Sobic003G359300 Sobic004G271900--Sobic009G117400 Sobic004G271900--Sobic007G205800 Sobic004G271900--Sobic008G034600 Sobic004G271900--Sobic010G263800 Sobic003G093600 Sobic003G093600 Sobic004G271900--Sobic003G093600 Sobic004G256600 Sobic004G256600 Sobic004G271900--Sobic004G256600 Sobic004G271900--Sobic007G011400 Sobic003G258400 Sobic003G258400 Sobic004G271900--Sobic003G258400 Sobic009G117300 Sobic009G117300 Sobic004G271900--Sobic009G117300 Sobic001G094000--Sobic007G011400 Sobic009G040700 Sobic009G040700 Sobic001G094000--Sobic009G040700 Sobic001G094000--Sobic001G477800 Sobic001G094000--Sobic002G157000 Sobic001G094000--Sobic003G268300 Sobic002G157300 Sobic002G157300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic001G094000--Sobic004G031700 Sobic006G080300 Sobic006G080300 Sobic001G094000--Sobic006G080300 Sobic002G421700--Sobic008G034600 Sobic002G421700--Sobic008G117200 Sobic001G454301 Sobic001G454301 Sobic002G421700--Sobic001G454301 Sobic002G061400 Sobic002G061400 Sobic002G421700--Sobic002G061400 Sobic005G015900 Sobic005G015900 Sobic002G421700--Sobic005G015900 Sobic008G129700 Sobic008G129700 Sobic002G421700--Sobic008G129700 Sobic007G116400 Sobic007G116400 Sobic002G421700--Sobic007G116400 Sobic002G421700--Sobic001G094000 Sobic006G217200 Sobic006G217200 Sobic002G421700--Sobic006G217200 Sobic008G067600 Sobic008G067600 Sobic001G090400--Sobic008G067600 Sobic006G173100 Sobic006G173100 Sobic001G090400--Sobic006G173100 Sobic004G057400 Sobic004G057400 Sobic001G090400--Sobic004G057400 Sobic001G176200 Sobic001G176200 Sobic001G090400--Sobic001G176200 Sobic002G320500 Sobic002G320500 Sobic001G090400--Sobic002G320500 Sobic001G090400--Sobic009G000500 Sobic001G090400--Sobic002G157300 Sobic004G205600 Sobic004G205600 Sobic001G090400--Sobic004G205600 Sobic002G248400 Sobic002G248400 Sobic001G090400--Sobic002G248400 Sobic009G117400--Sobic009G117300 Sobic009G117400--Sobic004G271900 Sobic009G117400--Sobic010G263800 Sobic009G117400--Sobic007G205800 Sobic009G117400--Sobic004G256600 Sobic009G117400--Sobic008G034600 Sobic001G347600 Sobic001G347600 Sobic009G117400--Sobic001G347600 Sobic009G117400--Sobic004G057400 Sobic006G209500 Sobic006G209500 Sobic009G117400--Sobic006G209500 Sobic007G011400--Sobic001G094000 Sobic007G011400--Sobic007G205800 Sobic007G011400--Sobic002G157300 Sobic007G011400--Sobic010G263800 Sobic002G313300 Sobic002G313300 Sobic007G011400--Sobic002G313300 Sobic007G011400--Sobic009G040700 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic007G011400--Sobic008G034600
Octagon: transcription factors


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