Gene annotation
Transcriptome id Sobic.001G092000.1
Synonym Sb01g008290
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5X166
Pfam -
Panther DB PTHR33059 PTHR33059:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11460 : Protein of unknown function (DUF581)
RAP-DB (Rice) LOC_Os03g53520.1 : expressed protein
MaizeGDB (Corn) Zm00025a008129 , Zm00025a016820
Brachypodium KQK13240
Barley HORVU4Hr1G002700.4 , HORVU4Hr1G002700.2 , HORVU4Hr1G002700.1 , HORVU4Hr1G002700.3
Wheat TraesCS4A02G295300 , TraesCS4B02G018400 , TraesCS4D02G016600
Populus -


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cDNA sequences
Sobic.001G092000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G274800 "senescence-inducible chloroplast stay-green protein, GenBank annotation:AY850140"(PubMedID : 17513504)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@senescence-inducible chloroplast stay-green protein 1, putative, expressed -
2 Sobic.001G409300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphatidylinositol transfer protein alpha isoform, putative, expressed -
3 Sobic.003G252300 universal stress protein domain containing protein, putative, expressed -
4 Sobic.001G235500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
5 Sobic.006G146100 Os4bglu18 - monolignol beta-glucoside homologue, expressed K05350: beta-glucosidase
6 Sobic.006G125400 steroid nuclear receptor, ligand-binding, putative, expressed -
7 Sobic.003G281900 regulator of chromosome condensation, putative, expressed -
8 Sobic.001G217400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
9 Sobic.003G269800 phosphatidylinositol transfer, putative, expressed -
10 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
11 Sobic.008G144500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS12-09 - C2H2 zinc finger protein, expressed -
12 Sobic.009G236300 lectin-like receptor kinase, putative, expressed -
13 Sobic.010G220000 MYB family transcription factor, putative, expressed -
14 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
15 Sobic.009G153000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin, putative, expressed K10355: actin, other eukaryote
16 Sobic.003G352600 ZOS1-16 - C2H2 zinc finger protein, expressed -
17 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
18 Sobic.009G097300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
19 Sobic.006G086100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
20 Sobic.001G350700 Positive regulator of ABA(PubMedID : 30367619)@CAMK_CAMK_like.19 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2


Gene co-expression network
sample Sobic001G092000 Sobic001G092000 Sobic002G274800 Sobic002G274800 Sobic001G092000--Sobic002G274800 Sobic001G409300 Sobic001G409300 Sobic001G092000--Sobic001G409300 Sobic003G252300 Sobic003G252300 Sobic001G092000--Sobic003G252300 Sobic001G235500 Sobic001G235500 Sobic001G092000--Sobic001G235500 Sobic006G146100 Sobic006G146100 Sobic001G092000--Sobic006G146100 Sobic006G125400 Sobic006G125400 Sobic001G092000--Sobic006G125400 Sobic003G281900 Sobic003G281900 Sobic001G092000--Sobic003G281900 Sobic001G217400 Sobic001G217400 Sobic001G092000--Sobic001G217400 Sobic003G269800 Sobic003G269800 Sobic001G092000--Sobic003G269800 Sobic010G043400 Sobic010G043400 Sobic002G274800--Sobic010G043400 Sobic007G225900 Sobic007G225900 Sobic002G274800--Sobic007G225900 Sobic002G274800--Sobic003G252300 Sobic003G105800 Sobic003G105800 Sobic002G274800--Sobic003G105800 Sobic002G249200 Sobic002G249200 Sobic002G274800--Sobic002G249200 Sobic008G189200 Sobic008G189200 Sobic002G274800--Sobic008G189200 Sobic009G161000 Sobic009G161000 Sobic002G274800--Sobic009G161000 Sobic004G124200 Sobic004G124200 Sobic002G274800--Sobic004G124200 Sobic001G282600 Sobic001G282600 Sobic002G274800--Sobic001G282600 Sobic008G059100 Sobic008G059100 Sobic001G409300--Sobic008G059100 Sobic004G211900 Sobic004G211900 Sobic001G409300--Sobic004G211900 Sobic003G242000 Sobic003G242000 Sobic001G409300--Sobic003G242000 Sobic001G409300--Sobic001G217400 Sobic010G272200 Sobic010G272200 Sobic001G409300--Sobic010G272200 Sobic003G051600 Sobic003G051600 Sobic001G409300--Sobic003G051600 Sobic001G409300--Sobic003G269800 Sobic003G397500 Sobic003G397500 Sobic001G409300--Sobic003G397500 Sobic009G136100 Sobic009G136100 Sobic001G409300--Sobic009G136100 Sobic003G252300--Sobic002G274800 Sobic005G216000 Sobic005G216000 Sobic003G252300--Sobic005G216000 Sobic003G252300--Sobic003G105800 Sobic006G115300 Sobic006G115300 Sobic003G252300--Sobic006G115300 Sobic008G190900 Sobic008G190900 Sobic003G252300--Sobic008G190900 Sobic004G162400 Sobic004G162400 Sobic003G252300--Sobic004G162400 Sobic003G252300--Sobic008G189200 Sobic003G252300--Sobic007G225900 Sobic003G252300--Sobic001G092000 Sobic001G235500--Sobic009G136100 Sobic009G118600 Sobic009G118600 Sobic001G235500--Sobic009G118600 Sobic005G215766 Sobic005G215766 Sobic001G235500--Sobic005G215766 Sobic001G235500--Sobic006G115300 Sobic004G200800 Sobic004G200800 Sobic001G235500--Sobic004G200800 Sobic009G236300 Sobic009G236300 Sobic001G235500--Sobic009G236300 Sobic001G235500--Sobic006G146100 Sobic006G086100 Sobic006G086100 Sobic001G235500--Sobic006G086100 Sobic009G097300 Sobic009G097300 Sobic001G235500--Sobic009G097300 Sobic006G146100--Sobic001G235500 Sobic006G146100--Sobic001G092000 Sobic009G038501 Sobic009G038501 Sobic006G146100--Sobic009G038501 Sobic006G146100--Sobic001G217400 Sobic006G146100--Sobic005G215766 Sobic003G059300 Sobic003G059300 Sobic006G146100--Sobic003G059300 Sobic008G144500 Sobic008G144500 Sobic006G146100--Sobic008G144500 Sobic009G197700 Sobic009G197700 Sobic006G146100--Sobic009G197700 Sobic003G360900 Sobic003G360900 Sobic006G146100--Sobic003G360900 Sobic006G204900 Sobic006G204900 Sobic006G125400--Sobic006G204900 Sobic006G125400--Sobic010G043400 Sobic004G269200 Sobic004G269200 Sobic006G125400--Sobic004G269200 Sobic010G107000 Sobic010G107000 Sobic006G125400--Sobic010G107000 Sobic001G207400 Sobic001G207400 Sobic006G125400--Sobic001G207400 Sobic003G355600 Sobic003G355600 Sobic006G125400--Sobic003G355600 Sobic006G271200 Sobic006G271200 Sobic006G125400--Sobic006G271200 Sobic006G214200 Sobic006G214200 Sobic006G125400--Sobic006G214200 Sobic002G009700 Sobic002G009700 Sobic006G125400--Sobic002G009700 Sobic003G272400 Sobic003G272400 Sobic003G281900--Sobic003G272400 Sobic003G281900--Sobic009G097300 Sobic002G306000 Sobic002G306000 Sobic003G281900--Sobic002G306000 Sobic003G126300 Sobic003G126300 Sobic003G281900--Sobic003G126300 Sobic004G353600 Sobic004G353600 Sobic003G281900--Sobic004G353600 Sobic003G281900--Sobic003G397500 Sobic009G213000 Sobic009G213000 Sobic003G281900--Sobic009G213000 Sobic009G079300 Sobic009G079300 Sobic003G281900--Sobic009G079300 Sobic007G047700 Sobic007G047700 Sobic003G281900--Sobic007G047700 Sobic010G072400 Sobic010G072400 Sobic001G217400--Sobic010G072400 Sobic001G350900 Sobic001G350900 Sobic001G217400--Sobic001G350900 Sobic001G350700 Sobic001G350700 Sobic001G217400--Sobic001G350700 Sobic001G217400--Sobic004G211900 Sobic001G217400--Sobic003G269800 Sobic003G320700 Sobic003G320700 Sobic001G217400--Sobic003G320700 Sobic007G210500 Sobic007G210500 Sobic001G217400--Sobic007G210500 Sobic003G101850 Sobic003G101850 Sobic001G217400--Sobic003G101850 Sobic001G217400--Sobic006G271200 Sobic003G269800--Sobic009G118600 Sobic003G269800--Sobic001G217400 Sobic004G124500 Sobic004G124500 Sobic003G269800--Sobic004G124500 Sobic003G269800--Sobic001G409300 Sobic007G056600 Sobic007G056600 Sobic003G269800--Sobic007G056600 Sobic003G269800--Sobic003G126300 Sobic001G399800 Sobic001G399800 Sobic003G269800--Sobic001G399800 Sobic003G269800--Sobic004G211900 Sobic003G269800--Sobic003G281900
Octagon: transcription factors


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