Gene annotation
Transcriptome id Sobic.008G177200.1,Sobic.008G177200.2
Synonym Sb08g022100, CAT2
Functional annotation amino acid permease, putative, expressed
UniProt A0A1B6PED8 , A0A1B6PED3
Pfam PF13906 PF13520
Panther DB PTHR11785 PTHR11785:SF401
NCBI CDD KOG1286; Amino acid transporters
KEGG Orthology K13863; SLC7A1, solute carrier family 7 (cationic amino acid transporter), member 1
Gene Ontology GO:0016020; membrane GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT1G58030 : cationic amino acid transporter 2
RAP-DB (Rice) LOC_Os12g42850.1 : amino acid permease, putative, expressed
MaizeGDB (Corn) Zm00025a007573 , Zm00025a004760
Brachypodium KQJ85719
Barley HORVU5Hr1G006900.20 , HORVU5Hr1G006900.11 , HORVU5Hr1G006900.19 , HORVU5Hr1G006900.12 , HORVU5Hr1G006900.13 , HORVU5Hr1G006900.10 , HORVU5Hr1G006900.16 , HORVU5Hr1G006900.17 , HORVU5Hr1G006900.14 , HORVU5Hr1G006900.15 , HORVU5Hr1G006900.18 , HORVU5Hr1G006900.8 , HORVU5Hr1G006900.9 , HORVU5Hr1G006900.1 , HORVU5Hr1G006900.2 , HORVU5Hr1G006900.3 , HORVU5Hr1G006900.4 , HORVU5Hr1G006900.5 , HORVU5Hr1G006900.6 , HORVU5Hr1G006900.7
Wheat TraesCS5A02G025400 , TraesCS5B02G023300 , TraesCS5D02G031800
Populus PNT07054 , PNT07055 , PNT07056 , PNS90348 , PNS90347


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cDNA sequences
Sobic.008G177200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G233700 transmembrane protein-related, putative, expressed -
2 Sobic.003G100800 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
3 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
4 Sobic.001G261200 copper/zinc superoxide dismutase(PubMedID : 23915383)@transporter family protein, putative, expressed -
5 Sobic.006G240700 AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
6 Sobic.001G130000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
7 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
8 Sobic.002G230100 carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
9 Sobic.004G244400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
10 Sobic.010G112300 aluminum-activated malate transporter, putative, expressed -
11 Sobic.001G120300 phytanoyl-CoA dioxygenase, putative, expressed K00477: phytanoyl-CoA hydroxylase
12 Sobic.005G157000 expressed protein -
13 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
14 Sobic.004G183600 molybdenum cofactor biosynthesis protein 1, putative, expressed K03639: moaA, GTP 3',8-cyclase
15 Sobic.004G052900 biotin--protein ligase, putative, expressed K01942: biotin---protein ligase
16 Sobic.009G249200 transmembrane protein, putative, expressed -
17 Sobic.006G043600 cysteine proteinase 1 precursor, putative, expressed K01373: cathepsin F
18 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
19 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
20 Sobic.003G200100 DUF630/DUF632 domains containing protein, putative, expressed -


Gene co-expression network
sample Sobic008G177200 Sobic008G177200 Sobic001G233700 Sobic001G233700 Sobic008G177200--Sobic001G233700 Sobic003G100800 Sobic003G100800 Sobic008G177200--Sobic003G100800 Sobic003G305200 Sobic003G305200 Sobic008G177200--Sobic003G305200 Sobic001G261200 Sobic001G261200 Sobic008G177200--Sobic001G261200 Sobic006G240700 Sobic006G240700 Sobic008G177200--Sobic006G240700 Sobic001G130000 Sobic001G130000 Sobic008G177200--Sobic001G130000 Sobic007G024700 Sobic007G024700 Sobic008G177200--Sobic007G024700 Sobic002G230100 Sobic002G230100 Sobic008G177200--Sobic002G230100 Sobic004G244400 Sobic004G244400 Sobic008G177200--Sobic004G244400 Sobic001G233700--Sobic008G177200 Sobic004G018100 Sobic004G018100 Sobic001G233700--Sobic004G018100 Sobic002G179900 Sobic002G179900 Sobic001G233700--Sobic002G179900 Sobic009G243800 Sobic009G243800 Sobic001G233700--Sobic009G243800 Sobic010G112300 Sobic010G112300 Sobic001G233700--Sobic010G112300 Sobic001G443900 Sobic001G443900 Sobic001G233700--Sobic001G443900 Sobic004G236400 Sobic004G236400 Sobic001G233700--Sobic004G236400 Sobic007G161800 Sobic007G161800 Sobic001G233700--Sobic007G161800 Sobic003G259100 Sobic003G259100 Sobic001G233700--Sobic003G259100 Sobic004G052900 Sobic004G052900 Sobic003G100800--Sobic004G052900 Sobic007G172400 Sobic007G172400 Sobic003G100800--Sobic007G172400 Sobic003G109100 Sobic003G109100 Sobic003G100800--Sobic003G109100 Sobic003G100800--Sobic007G024700 Sobic004G329400 Sobic004G329400 Sobic003G100800--Sobic004G329400 Sobic001G248300 Sobic001G248300 Sobic003G100800--Sobic001G248300 Sobic001G178700 Sobic001G178700 Sobic003G100800--Sobic001G178700 Sobic010G251200 Sobic010G251200 Sobic003G100800--Sobic010G251200 Sobic004G113400 Sobic004G113400 Sobic003G100800--Sobic004G113400 Sobic003G305200--Sobic007G024700 Sobic010G130200 Sobic010G130200 Sobic003G305200--Sobic010G130200 Sobic001G427100 Sobic001G427100 Sobic003G305200--Sobic001G427100 Sobic006G083600 Sobic006G083600 Sobic003G305200--Sobic006G083600 Sobic002G132000 Sobic002G132000 Sobic003G305200--Sobic002G132000 Sobic004G295800 Sobic004G295800 Sobic003G305200--Sobic004G295800 Sobic009G094300 Sobic009G094300 Sobic003G305200--Sobic009G094300 Sobic002G270500 Sobic002G270500 Sobic003G305200--Sobic002G270500 Sobic003G329400 Sobic003G329400 Sobic003G305200--Sobic003G329400 Sobic001G280900 Sobic001G280900 Sobic001G261200--Sobic001G280900 Sobic006G058100 Sobic006G058100 Sobic001G261200--Sobic006G058100 Sobic001G261200--Sobic004G236400 Sobic001G261200--Sobic004G329400 Sobic001G222500 Sobic001G222500 Sobic001G261200--Sobic001G222500 Sobic001G016600 Sobic001G016600 Sobic001G261200--Sobic001G016600 Sobic002G161900 Sobic002G161900 Sobic001G261200--Sobic002G161900 Sobic001G334700 Sobic001G334700 Sobic001G261200--Sobic001G334700 Sobic001G125200 Sobic001G125200 Sobic001G261200--Sobic001G125200 Sobic006G240700--Sobic003G305200 Sobic001G111150 Sobic001G111150 Sobic006G240700--Sobic001G111150 Sobic003G200100 Sobic003G200100 Sobic006G240700--Sobic003G200100 Sobic006G240700--Sobic001G130000 Sobic006G240700--Sobic007G024700 Sobic006G240700--Sobic008G177200 Sobic006G240700--Sobic003G100800 Sobic010G001500 Sobic010G001500 Sobic006G240700--Sobic010G001500 Sobic001G474500 Sobic001G474500 Sobic006G240700--Sobic001G474500 Sobic001G130000--Sobic001G474500 Sobic009G034700 Sobic009G034700 Sobic001G130000--Sobic009G034700 Sobic007G068100 Sobic007G068100 Sobic001G130000--Sobic007G068100 Sobic003G388251 Sobic003G388251 Sobic001G130000--Sobic003G388251 Sobic001G325200 Sobic001G325200 Sobic001G130000--Sobic001G325200 Sobic001G069900 Sobic001G069900 Sobic001G130000--Sobic001G069900 Sobic008G079300 Sobic008G079300 Sobic001G130000--Sobic008G079300 Sobic008G017800 Sobic008G017800 Sobic001G130000--Sobic008G017800 Sobic004G345800 Sobic004G345800 Sobic001G130000--Sobic004G345800 Sobic007G024700--Sobic002G270500 Sobic007G024700--Sobic009G094300 Sobic009G249200 Sobic009G249200 Sobic007G024700--Sobic009G249200 Sobic007G024700--Sobic004G052900 Sobic001G270400 Sobic001G270400 Sobic007G024700--Sobic001G270400 Sobic004G264400 Sobic004G264400 Sobic007G024700--Sobic004G264400 Sobic007G024700--Sobic003G305200 Sobic007G024700--Sobic002G132000 Sobic002G419800 Sobic002G419800 Sobic007G024700--Sobic002G419800 Sobic004G053700 Sobic004G053700 Sobic002G230100--Sobic004G053700 Sobic004G183600 Sobic004G183600 Sobic002G230100--Sobic004G183600 Sobic002G399100 Sobic002G399100 Sobic002G230100--Sobic002G399100 Sobic010G153700 Sobic010G153700 Sobic002G230100--Sobic010G153700 Sobic002G230100--Sobic001G270400 Sobic002G116900 Sobic002G116900 Sobic002G230100--Sobic002G116900 Sobic001G056601 Sobic001G056601 Sobic002G230100--Sobic001G056601 Sobic001G137100 Sobic001G137100 Sobic002G230100--Sobic001G137100 Sobic001G383300 Sobic001G383300 Sobic002G230100--Sobic001G383300 Sobic004G244400--Sobic006G058100 Sobic003G040000 Sobic003G040000 Sobic004G244400--Sobic003G040000 Sobic004G244400--Sobic001G261200 Sobic004G244400--Sobic004G018100 Sobic004G142700 Sobic004G142700 Sobic004G244400--Sobic004G142700 Sobic004G244400--Sobic004G236400 Sobic001G261573 Sobic001G261573 Sobic004G244400--Sobic001G261573 Sobic001G354501 Sobic001G354501 Sobic004G244400--Sobic001G354501 Sobic003G254000 Sobic003G254000 Sobic004G244400--Sobic003G254000
Octagon: transcription factors


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