Gene annotation
Transcriptome id Sobic.001G261200.1
Synonym CSD2, Sb01g023950
Functional annotation copper/zinc superoxide dismutase (PubMedID : 23915383)
transporter family protein, putative, expressed
UniProt A0A1B6QL68
Pfam PF07690 PF00083
Panther DB PTHR24064 PTHR24064:SF287
NCBI CDD KOG0253; Synaptic vesicle transporter SV2 (major facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G13050 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os03g43720.4 : transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a004052 , Zm00025a007325
Brachypodium -
Barley -
Wheat TraesCS5D02G387000 , TraesCS5D02G387000 , TraesCS5D02G387000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G280900 expressed protein -
2 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
3 Sobic.004G236400 AAA family ATPase, putative, expressed -
4 Sobic.004G329400 formin, putative, expressed -
5 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
6 Sobic.001G016600 FAR1 family protein, expressed -
7 Sobic.002G161900 NBS-LRR disease resistance protein, putative, expressed -
8 Sobic.001G334700 OsWAK28 - OsWAK receptor-like protein kinase, expressed -
9 Sobic.001G125200 HEAT repeat family protein, putative, expressed -
10 Sobic.004G030100 glycosyltransferase, putative, expressed -
11 Sobic.007G002300 protein kinase family protein, putative, expressed K17535: serine/threonine-protein kinase TNNI3K
12 Sobic.009G094900 sugar porter, putative, expressed -
13 Sobic.005G157000 expressed protein -
14 Sobic.009G249200 transmembrane protein, putative, expressed -
15 Sobic.007G161800 kinase, pfkB family, putative, expressed -
16 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
17 Sobic.001G383300 ABC transporter, ATP-binding protein, putative, expressed K05663: ATP-binding cassette, subfamily B, mitochondrial transporter ATM
18 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
19 Sobic.004G244400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
20 Sobic.003G014500 "MHZ7(Ortholog in rice:Ma et al., 2013)"(PubMedID : 31659865)@ethylene-insensitive protein, putative, expressed K14513: ethylene-insensitive protein 2


Gene co-expression network
sample Sobic001G261200 Sobic001G261200 Sobic001G280900 Sobic001G280900 Sobic001G261200--Sobic001G280900 Sobic006G058100 Sobic006G058100 Sobic001G261200--Sobic006G058100 Sobic004G236400 Sobic004G236400 Sobic001G261200--Sobic004G236400 Sobic004G329400 Sobic004G329400 Sobic001G261200--Sobic004G329400 Sobic001G222500 Sobic001G222500 Sobic001G261200--Sobic001G222500 Sobic001G016600 Sobic001G016600 Sobic001G261200--Sobic001G016600 Sobic002G161900 Sobic002G161900 Sobic001G261200--Sobic002G161900 Sobic001G334700 Sobic001G334700 Sobic001G261200--Sobic001G334700 Sobic001G125200 Sobic001G125200 Sobic001G261200--Sobic001G125200 Sobic001G540400 Sobic001G540400 Sobic001G280900--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic001G280900--Sobic005G112300 Sobic002G397500 Sobic002G397500 Sobic001G280900--Sobic002G397500 Sobic003G408600 Sobic003G408600 Sobic001G280900--Sobic003G408600 Sobic009G109200 Sobic009G109200 Sobic001G280900--Sobic009G109200 Sobic005G008800 Sobic005G008800 Sobic001G280900--Sobic005G008800 Sobic007G062800 Sobic007G062800 Sobic001G280900--Sobic007G062800 Sobic001G058700 Sobic001G058700 Sobic001G280900--Sobic001G058700 Sobic001G050600 Sobic001G050600 Sobic001G280900--Sobic001G050600 Sobic002G143500 Sobic002G143500 Sobic006G058100--Sobic002G143500 Sobic003G067100 Sobic003G067100 Sobic006G058100--Sobic003G067100 Sobic003G040000 Sobic003G040000 Sobic006G058100--Sobic003G040000 Sobic001G166600 Sobic001G166600 Sobic006G058100--Sobic001G166600 Sobic006G058100--Sobic004G236400 Sobic001G261573 Sobic001G261573 Sobic006G058100--Sobic001G261573 Sobic010G176550 Sobic010G176550 Sobic006G058100--Sobic010G176550 Sobic004G225600 Sobic004G225600 Sobic006G058100--Sobic004G225600 Sobic009G094900 Sobic009G094900 Sobic006G058100--Sobic009G094900 Sobic004G236400--Sobic006G058100 Sobic004G236400--Sobic001G166600 Sobic007G225000 Sobic007G225000 Sobic004G236400--Sobic007G225000 Sobic001G214600 Sobic001G214600 Sobic004G236400--Sobic001G214600 Sobic001G014900 Sobic001G014900 Sobic004G236400--Sobic001G014900 Sobic004G236400--Sobic002G143500 Sobic004G314000 Sobic004G314000 Sobic004G236400--Sobic004G314000 Sobic004G236400--Sobic003G067100 Sobic005G001000 Sobic005G001000 Sobic004G236400--Sobic005G001000 Sobic004G113400 Sobic004G113400 Sobic004G329400--Sobic004G113400 Sobic009G027300 Sobic009G027300 Sobic004G329400--Sobic009G027300 Sobic005G157000 Sobic005G157000 Sobic004G329400--Sobic005G157000 Sobic004G329400--Sobic001G058700 Sobic004G355000 Sobic004G355000 Sobic004G329400--Sobic004G355000 Sobic004G269200 Sobic004G269200 Sobic004G329400--Sobic004G269200 Sobic007G024700 Sobic007G024700 Sobic004G329400--Sobic007G024700 Sobic007G172400 Sobic007G172400 Sobic004G329400--Sobic007G172400 Sobic004G329400--Sobic003G408600 Sobic004G084300 Sobic004G084300 Sobic001G222500--Sobic004G084300 Sobic008G047800 Sobic008G047800 Sobic001G222500--Sobic008G047800 Sobic001G155000 Sobic001G155000 Sobic001G222500--Sobic001G155000 Sobic002G310200 Sobic002G310200 Sobic001G222500--Sobic002G310200 Sobic009G126400 Sobic009G126400 Sobic001G222500--Sobic009G126400 Sobic009G040600 Sobic009G040600 Sobic001G222500--Sobic009G040600 Sobic002G006900 Sobic002G006900 Sobic001G222500--Sobic002G006900 Sobic003G052200 Sobic003G052200 Sobic001G222500--Sobic003G052200 Sobic007G096000 Sobic007G096000 Sobic001G222500--Sobic007G096000 Sobic001G016600--Sobic005G112300 Sobic005G128400 Sobic005G128400 Sobic001G016600--Sobic005G128400 Sobic001G363500 Sobic001G363500 Sobic001G016600--Sobic001G363500 Sobic001G241200 Sobic001G241200 Sobic001G016600--Sobic001G241200 Sobic007G105100 Sobic007G105100 Sobic001G016600--Sobic007G105100 Sobic001G289600 Sobic001G289600 Sobic001G016600--Sobic001G289600 Sobic003G229500 Sobic003G229500 Sobic001G016600--Sobic003G229500 Sobic001G002000 Sobic001G002000 Sobic001G016600--Sobic001G002000 Sobic001G016600--Sobic001G540400 Sobic005G019600 Sobic005G019600 Sobic002G161900--Sobic005G019600 Sobic010G112000 Sobic010G112000 Sobic002G161900--Sobic010G112000 Sobic002G173000 Sobic002G173000 Sobic002G161900--Sobic002G173000 Sobic005G032800 Sobic005G032800 Sobic002G161900--Sobic005G032800 Sobic001G474600 Sobic001G474600 Sobic002G161900--Sobic001G474600 Sobic009G221000 Sobic009G221000 Sobic002G161900--Sobic009G221000 Sobic008G016300 Sobic008G016300 Sobic002G161900--Sobic008G016300 Sobic002G161900--Sobic001G280900 Sobic007G020500 Sobic007G020500 Sobic002G161900--Sobic007G020500 Sobic004G260100 Sobic004G260100 Sobic001G334700--Sobic004G260100 Sobic001G334700--Sobic002G397500 Sobic003G014500 Sobic003G014500 Sobic001G334700--Sobic003G014500 Sobic001G334700--Sobic001G280900 Sobic002G362800 Sobic002G362800 Sobic001G334700--Sobic002G362800 Sobic003G164200 Sobic003G164200 Sobic001G334700--Sobic003G164200 Sobic008G150700 Sobic008G150700 Sobic001G334700--Sobic008G150700 Sobic007G220300 Sobic007G220300 Sobic001G334700--Sobic007G220300 Sobic006G040800 Sobic006G040800 Sobic001G334700--Sobic006G040800 Sobic001G125200--Sobic001G474600 Sobic003G056100 Sobic003G056100 Sobic001G125200--Sobic003G056100 Sobic007G207000 Sobic007G207000 Sobic001G125200--Sobic007G207000 Sobic010G069100 Sobic010G069100 Sobic001G125200--Sobic010G069100 Sobic009G026500 Sobic009G026500 Sobic001G125200--Sobic009G026500 Sobic009G166300 Sobic009G166300 Sobic001G125200--Sobic009G166300 Sobic001G409600 Sobic001G409600 Sobic001G125200--Sobic001G409600 Sobic001G125200--Sobic002G006900 Sobic007G217000 Sobic007G217000 Sobic001G125200--Sobic007G217000
Octagon: transcription factors


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