Gene annotation
Transcriptome id Sobic.001G383300.1
Synonym Sb01g036355, ATM3, STA1, ATATM3
Functional annotation ABC transporter, ATP-binding protein, putative, expressed
UniProt C5X0U8
Pfam PF00005 PF00664
Panther DB PTHR24221 PTHR24221:SF18
NCBI CDD -
KEGG Orthology K05663; ATP-binding cassette, subfamily B, mitochondrial transporter ATM
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT5G58270 : ABC transporter of the mitochondrion 3
RAP-DB (Rice) LOC_Os06g03770.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a002316
Brachypodium PNT77477 , KQK21841 , KQK21842 , KQJ86107 , KQJ86106
Barley HORVU2Hr1G061870.14 , HORVU2Hr1G061870.15 , HORVU2Hr1G061870.13 , HORVU2Hr1G004730.8 , HORVU2Hr1G004730.9 , HORVU2Hr1G004730.6 , HORVU2Hr1G004730.7 , HORVU2Hr1G004730.4 , HORVU2Hr1G004730.5 , HORVU2Hr1G004730.2 , HORVU2Hr1G004730.3 , HORVU2Hr1G004730.1 , HORVU2Hr1G004730.12 , HORVU2Hr1G004730.18 , HORVU2Hr1G004730.19 , HORVU2Hr1G004730.28 , HORVU2Hr1G004730.21 , HORVU2Hr1G004730.20 , HORVU2Hr1G004730.23 , HORVU2Hr1G004730.22 , HORVU2Hr1G004730.25 , HORVU2Hr1G004730.24 , HORVU2Hr1G004730.27 , HORVU2Hr1G004730.26 , HORVU3Hr1G033230.10 , HORVU2Hr1G004730.15 , HORVU4Hr1G050840.9 , HORVU4Hr1G050840.8 , HORVU4Hr1G050840.7 , HORVU4Hr1G050840.6 , HORVU4Hr1G050840.5 , HORVU4Hr1G050840.4 , HORVU4Hr1G050840.3 , HORVU4Hr1G050840.2 , HORVU4Hr1G050840.1 , HORVU2Hr1G004730.13 , HORVU2Hr1G004730.14 , HORVU2Hr1G004730.16 , HORVU2Hr1G004730.17 , HORVU2Hr1G004730.10 , HORVU2Hr1G004730.11 , HORVU2Hr1G061870.4 , HORVU2Hr1G061870.6 , HORVU2Hr1G061870.7 , HORVU2Hr1G061870.2 , HORVU2Hr1G061870.8 , HORVU4Hr1G050840.10 , HORVU4Hr1G050840.26 , HORVU4Hr1G050840.24 , HORVU4Hr1G050840.25 , HORVU4Hr1G050840.23 , HORVU2Hr1G061870.28 , HORVU2Hr1G061870.26 , HORVU2Hr1G061870.23 , HORVU2Hr1G061870.22 , HORVU2Hr1G061870.20 , HORVU3Hr1G033230.8 , HORVU3Hr1G033230.9 , HORVU3Hr1G033230.2 , HORVU3Hr1G033230.3 , HORVU3Hr1G033230.5 , HORVU3Hr1G033230.7
Wheat TraesCS4D02G174000 , TraesCS2A02G028800 , TraesCS2A02G028800 , TraesCS2D02G031100 , TraesCS2B02G041600 , TraesCS4B02G172000 , TraesCS4B02G172000 , TraesCS4B02G172000 , TraesCS4A02G132700 , TraesCS4A02G132700 , TraesCS4A02G132700 , TraesCS4D02G174000
Populus -


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cDNA sequences
Sobic.001G383300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
2 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
3 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
4 Sobic.010G032900 transketolase, putative, expressed K01662: 1-deoxy-D-xylulose-5-phosphate synthase
5 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
6 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
7 Sobic.008G103200 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
8 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
9 Sobic.003G164200 cullin, putative, expressed K03347: CUL1, cullin 1
10 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
11 Sobic.001G334700 OsWAK28 - OsWAK receptor-like protein kinase, expressed -
12 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
13 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
14 Sobic.003G266001 - -
15 Sobic.002G161800 Myb-like DNA-binding domain containing protein, putative, expressed -
16 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
17 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
18 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
19 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
20 Sobic.006G200600 expressed protein -


Gene co-expression network
sample Sobic001G383300 Sobic001G383300 Sobic008G047800 Sobic008G047800 Sobic001G383300--Sobic008G047800 Sobic004G084300 Sobic004G084300 Sobic001G383300--Sobic004G084300 Sobic001G222500 Sobic001G222500 Sobic001G383300--Sobic001G222500 Sobic010G032900 Sobic010G032900 Sobic001G383300--Sobic010G032900 Sobic009G040600 Sobic009G040600 Sobic001G383300--Sobic009G040600 Sobic003G141500 Sobic003G141500 Sobic001G383300--Sobic003G141500 Sobic008G103200 Sobic008G103200 Sobic001G383300--Sobic008G103200 Sobic001G392300 Sobic001G392300 Sobic001G383300--Sobic001G392300 Sobic003G164200 Sobic003G164200 Sobic001G383300--Sobic003G164200 Sobic002G006900 Sobic002G006900 Sobic008G047800--Sobic002G006900 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic004G084300--Sobic008G047800 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic004G084300--Sobic002G006900 Sobic010G236400 Sobic010G236400 Sobic004G084300--Sobic010G236400 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic001G222500--Sobic004G084300 Sobic001G222500--Sobic008G047800 Sobic001G222500--Sobic001G155000 Sobic002G310200 Sobic002G310200 Sobic001G222500--Sobic002G310200 Sobic009G126400 Sobic009G126400 Sobic001G222500--Sobic009G126400 Sobic001G222500--Sobic009G040600 Sobic001G222500--Sobic002G006900 Sobic003G052200 Sobic003G052200 Sobic001G222500--Sobic003G052200 Sobic007G096000 Sobic007G096000 Sobic001G222500--Sobic007G096000 Sobic005G059800 Sobic005G059800 Sobic010G032900--Sobic005G059800 Sobic010G139000 Sobic010G139000 Sobic010G032900--Sobic010G139000 Sobic003G170900 Sobic003G170900 Sobic010G032900--Sobic003G170900 Sobic001G194200 Sobic001G194200 Sobic010G032900--Sobic001G194200 Sobic001G002000 Sobic001G002000 Sobic010G032900--Sobic001G002000 Sobic003G011300 Sobic003G011300 Sobic010G032900--Sobic003G011300 Sobic004G291900 Sobic004G291900 Sobic010G032900--Sobic004G291900 Sobic002G294800 Sobic002G294800 Sobic010G032900--Sobic002G294800 Sobic002G134200 Sobic002G134200 Sobic010G032900--Sobic002G134200 Sobic004G009600 Sobic004G009600 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G040600--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic009G040600--Sobic007G065400 Sobic008G028700 Sobic008G028700 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G040600--Sobic009G126400 Sobic001G219600 Sobic001G219600 Sobic003G141500--Sobic001G219600 Sobic003G141500--Sobic008G047800 Sobic009G050900 Sobic009G050900 Sobic003G141500--Sobic009G050900 Sobic001G493200 Sobic001G493200 Sobic003G141500--Sobic001G493200 Sobic002G143500 Sobic002G143500 Sobic003G141500--Sobic002G143500 Sobic003G443100 Sobic003G443100 Sobic003G141500--Sobic003G443100 Sobic003G141500--Sobic009G126400 Sobic001G071400 Sobic001G071400 Sobic003G141500--Sobic001G071400 Sobic006G200600 Sobic006G200600 Sobic003G141500--Sobic006G200600 Sobic008G103200--Sobic008G047800 Sobic003G266001 Sobic003G266001 Sobic008G103200--Sobic003G266001 Sobic004G065100 Sobic004G065100 Sobic008G103200--Sobic004G065100 Sobic008G103200--Sobic001G222500 Sobic010G069100 Sobic010G069100 Sobic008G103200--Sobic010G069100 Sobic008G103200--Sobic002G310200 Sobic008G103200--Sobic004G084300 Sobic001G154900 Sobic001G154900 Sobic008G103200--Sobic001G154900 Sobic004G072100 Sobic004G072100 Sobic008G103200--Sobic004G072100 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic009G044800 Sobic009G044800 Sobic001G392300--Sobic009G044800 Sobic001G392300--Sobic008G047800 Sobic001G392300--Sobic006G200600 Sobic008G118200 Sobic008G118200 Sobic003G164200--Sobic008G118200 Sobic003G164200--Sobic001G392300 Sobic008G089100 Sobic008G089100 Sobic003G164200--Sobic008G089100 Sobic009G088000 Sobic009G088000 Sobic003G164200--Sobic009G088000 Sobic004G039600 Sobic004G039600 Sobic003G164200--Sobic004G039600 Sobic006G041600 Sobic006G041600 Sobic003G164200--Sobic006G041600 Sobic002G133300 Sobic002G133300 Sobic003G164200--Sobic002G133300 Sobic010G275500 Sobic010G275500 Sobic003G164200--Sobic010G275500 Sobic010G112100 Sobic010G112100 Sobic003G164200--Sobic010G112100
Octagon: transcription factors


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