Gene annotation
Transcriptome id Sobic.004G244400.3,Sobic.004G244400.1,Sobic.004G244400.4,Sobic.004G244400.2
Synonym ISE2, Sb04g028500, PDE317, EMB25
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
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UniProt C5XZ81 , A0A1Z5RPC1 , A0A194YSJ0
Pfam PF00271 PF00270 PF08148 PF08148 PF00270 PF00271 PF08148 PF00271 PF00271 PF08148
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding GO:0005524ATP binding GO:0005524ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G70070 : DEAD/DEAH box helicase, putative
RAP-DB (Rice) LOC_Os02g50560.1 : DSHCT domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021975
Brachypodium PNT69667 , PNT69666 , PNT69668 , KQK02004
Barley HORVU6Hr1G076860.7 , HORVU6Hr1G076860.6 , HORVU6Hr1G076860.5 , HORVU6Hr1G076860.4 , HORVU6Hr1G076860.3 , HORVU6Hr1G076860.2 , HORVU6Hr1G076860.1 , HORVU6Hr1G076860.9 , HORVU6Hr1G076860.8 , HORVU6Hr1G076860.10
Wheat TraesCS6A02G312100 , TraesCS6A02G312100 , TraesCS6B02G342300 , TraesCS6B02G342300 , TraesCS6D02G291500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
2 Sobic.003G040000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
3 Sobic.001G261200 copper/zinc superoxide dismutase(PubMedID : 23915383)@transporter family protein, putative, expressed -
4 Sobic.004G018100 glutamyl-tRNA synthetase, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
5 Sobic.004G142700 PPR repeat domain containing protein, putative, expressed -
6 Sobic.004G236400 AAA family ATPase, putative, expressed -
7 Sobic.001G261573 - -
8 Sobic.001G354501 - K07877: Ras-related protein Rab-2A
9 Sobic.003G254000 PPR repeat domain containing protein, putative, expressed -
10 Sobic.005G039500 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
11 Sobic.009G094900 sugar porter, putative, expressed -
12 Sobic.008G177200 amino acid permease, putative, expressed K13863: SLC7A1, solute carrier family 7 (cationic amino acid transporter), member 1
13 Sobic.002G161900 NBS-LRR disease resistance protein, putative, expressed -
14 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
15 Sobic.002G143500 sulfate transporter 4.1, chloroplast precursor, putative, expressed K18059: sulfate transporter 4
16 Sobic.005G019600 rp3 protein, putative, expressed -
17 Sobic.001G233700 transmembrane protein-related, putative, expressed -
18 Sobic.001G202000 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
19 Sobic.002G399100 zinc finger, RING-type, putative, expressed K15688: E3 ubiquitin-protein ligase MUL1
20 Sobic.001G125200 HEAT repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic004G244400 Sobic004G244400 Sobic006G058100 Sobic006G058100 Sobic004G244400--Sobic006G058100 Sobic003G040000 Sobic003G040000 Sobic004G244400--Sobic003G040000 Sobic001G261200 Sobic001G261200 Sobic004G244400--Sobic001G261200 Sobic004G018100 Sobic004G018100 Sobic004G244400--Sobic004G018100 Sobic004G142700 Sobic004G142700 Sobic004G244400--Sobic004G142700 Sobic004G236400 Sobic004G236400 Sobic004G244400--Sobic004G236400 Sobic001G261573 Sobic001G261573 Sobic004G244400--Sobic001G261573 Sobic001G354501 Sobic001G354501 Sobic004G244400--Sobic001G354501 Sobic003G254000 Sobic003G254000 Sobic004G244400--Sobic003G254000 Sobic002G143500 Sobic002G143500 Sobic006G058100--Sobic002G143500 Sobic003G067100 Sobic003G067100 Sobic006G058100--Sobic003G067100 Sobic006G058100--Sobic003G040000 Sobic001G166600 Sobic001G166600 Sobic006G058100--Sobic001G166600 Sobic006G058100--Sobic004G236400 Sobic006G058100--Sobic001G261573 Sobic010G176550 Sobic010G176550 Sobic006G058100--Sobic010G176550 Sobic004G225600 Sobic004G225600 Sobic006G058100--Sobic004G225600 Sobic009G094900 Sobic009G094900 Sobic006G058100--Sobic009G094900 Sobic003G040000--Sobic006G058100 Sobic002G293600 Sobic002G293600 Sobic003G040000--Sobic002G293600 Sobic009G127400 Sobic009G127400 Sobic003G040000--Sobic009G127400 Sobic003G162800 Sobic003G162800 Sobic003G040000--Sobic003G162800 Sobic003G327200 Sobic003G327200 Sobic003G040000--Sobic003G327200 Sobic003G434700 Sobic003G434700 Sobic003G040000--Sobic003G434700 Sobic007G076700 Sobic007G076700 Sobic003G040000--Sobic007G076700 Sobic003G149300 Sobic003G149300 Sobic003G040000--Sobic003G149300 Sobic001G022500 Sobic001G022500 Sobic003G040000--Sobic001G022500 Sobic001G280900 Sobic001G280900 Sobic001G261200--Sobic001G280900 Sobic001G261200--Sobic006G058100 Sobic001G261200--Sobic004G236400 Sobic004G329400 Sobic004G329400 Sobic001G261200--Sobic004G329400 Sobic001G222500 Sobic001G222500 Sobic001G261200--Sobic001G222500 Sobic001G016600 Sobic001G016600 Sobic001G261200--Sobic001G016600 Sobic002G161900 Sobic002G161900 Sobic001G261200--Sobic002G161900 Sobic001G334700 Sobic001G334700 Sobic001G261200--Sobic001G334700 Sobic001G125200 Sobic001G125200 Sobic001G261200--Sobic001G125200 Sobic008G090900 Sobic008G090900 Sobic004G018100--Sobic008G090900 Sobic004G018100--Sobic003G040000 Sobic006G021800 Sobic006G021800 Sobic004G018100--Sobic006G021800 Sobic004G018100--Sobic006G058100 Sobic004G263200 Sobic004G263200 Sobic004G018100--Sobic004G263200 Sobic002G181132 Sobic002G181132 Sobic004G018100--Sobic002G181132 Sobic007G095500 Sobic007G095500 Sobic004G018100--Sobic007G095500 Sobic004G214400 Sobic004G214400 Sobic004G018100--Sobic004G214400 Sobic003G345900 Sobic003G345900 Sobic004G018100--Sobic003G345900 Sobic004G035000 Sobic004G035000 Sobic004G142700--Sobic004G035000 Sobic004G142700--Sobic007G076700 Sobic009G212700 Sobic009G212700 Sobic004G142700--Sobic009G212700 Sobic004G246800 Sobic004G246800 Sobic004G142700--Sobic004G246800 Sobic004G142700--Sobic003G254000 Sobic004G142700--Sobic001G354501 Sobic010G248600 Sobic010G248600 Sobic004G142700--Sobic010G248600 Sobic006G196000 Sobic006G196000 Sobic004G142700--Sobic006G196000 Sobic004G151900 Sobic004G151900 Sobic004G142700--Sobic004G151900 Sobic004G236400--Sobic006G058100 Sobic004G236400--Sobic001G166600 Sobic007G225000 Sobic007G225000 Sobic004G236400--Sobic007G225000 Sobic001G214600 Sobic001G214600 Sobic004G236400--Sobic001G214600 Sobic001G014900 Sobic001G014900 Sobic004G236400--Sobic001G014900 Sobic004G236400--Sobic002G143500 Sobic004G314000 Sobic004G314000 Sobic004G236400--Sobic004G314000 Sobic004G236400--Sobic003G067100 Sobic005G001000 Sobic005G001000 Sobic004G236400--Sobic005G001000 Sobic001G261573--Sobic003G254000 Sobic007G185700 Sobic007G185700 Sobic001G261573--Sobic007G185700 Sobic001G261573--Sobic010G176550 Sobic002G231200 Sobic002G231200 Sobic001G261573--Sobic002G231200 Sobic005G039500 Sobic005G039500 Sobic001G261573--Sobic005G039500 Sobic001G261573--Sobic006G058100 Sobic003G234900 Sobic003G234900 Sobic001G261573--Sobic003G234900 Sobic003G161000 Sobic003G161000 Sobic001G261573--Sobic003G161000 Sobic009G209300 Sobic009G209300 Sobic001G261573--Sobic009G209300 Sobic002G209600 Sobic002G209600 Sobic001G354501--Sobic002G209600 Sobic001G354501--Sobic003G254000 Sobic001G354501--Sobic007G076700 Sobic007G052900 Sobic007G052900 Sobic001G354501--Sobic007G052900 Sobic001G354501--Sobic003G161000 Sobic005G197300 Sobic005G197300 Sobic001G354501--Sobic005G197300 Sobic001G354501--Sobic003G040000 Sobic010G005600 Sobic010G005600 Sobic001G354501--Sobic010G005600 Sobic002G114700 Sobic002G114700 Sobic001G354501--Sobic002G114700 Sobic001G035900 Sobic001G035900 Sobic003G254000--Sobic001G035900 Sobic003G254000--Sobic001G261573 Sobic003G254000--Sobic004G035000 Sobic002G031400 Sobic002G031400 Sobic003G254000--Sobic002G031400 Sobic003G254000--Sobic005G039500 Sobic002G064750 Sobic002G064750 Sobic003G254000--Sobic002G064750 Sobic001G274200 Sobic001G274200 Sobic003G254000--Sobic001G274200 Sobic007G099100 Sobic007G099100 Sobic003G254000--Sobic007G099100 Sobic003G429650 Sobic003G429650 Sobic003G254000--Sobic003G429650
Octagon: transcription factors


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