Gene annotation
Transcriptome id Sobic.001G233700.3,Sobic.001G233700.4,Sobic.001G233700.1
Synonym Sb01g020480
Functional annotation transmembrane protein-related, putative, expressed
UniProt A0A1Z5S6Z3 , A0A1B6QKJ0
Pfam PF12036
Panther DB PTHR14319 PTHR14319:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G46060 : transmembrane protein-related
RAP-DB (Rice) LOC_Os10g30910.1 : transmembrane protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a017702
Brachypodium KQJ96909 , PNT67469 , PNT67468 , PNT67467 , PNT67466 , PNT67465
Barley -
Wheat TraesCS1B02G159600 , TraesCS1B02G159600 , TraesCS1B02G159600 , TraesCS1B02G159600 , TraesCS1B02G159600 , TraesCS1D02G141200 , TraesCS1D02G141200 , TraesCS1D02G141200 , TraesCS1D02G141200 , TraesCS1D02G141200 , TraesCS1D02G141200 , TraesCS1A02G142200 , TraesCS1A02G142200 , TraesCS1A02G142200 , TraesCS1A02G142200 , TraesCS1A02G142200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G177200 amino acid permease, putative, expressed K13863: SLC7A1, solute carrier family 7 (cationic amino acid transporter), member 1
2 Sobic.004G018100 glutamyl-tRNA synthetase, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
3 Sobic.002G179900 ABC transporter, ATP-binding protein, putative, expressed -
4 Sobic.009G243800 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
5 Sobic.010G112300 aluminum-activated malate transporter, putative, expressed -
6 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
7 Sobic.004G236400 AAA family ATPase, putative, expressed -
8 Sobic.007G161800 kinase, pfkB family, putative, expressed -
9 Sobic.003G259100 GPI transamidase component family protein, putative, expressed K05289: GPI-anchor transamidase subunit GAA1
10 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
11 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
12 Sobic.003G158300 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
13 Sobic.001G261200 copper/zinc superoxide dismutase(PubMedID : 23915383)@transporter family protein, putative, expressed -
14 Sobic.004G244400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
15 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
16 Sobic.006G114500 per1-like family protein, putative, expressed -
17 Sobic.002G403500 tetratricopeptide-like helical, putative, expressed -
18 Sobic.005G157000 expressed protein -
19 Sobic.004G325400 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant
20 Sobic.001G373200 lipase precursor, putative, expressed -


Gene co-expression network
sample Sobic001G233700 Sobic001G233700 Sobic008G177200 Sobic008G177200 Sobic001G233700--Sobic008G177200 Sobic004G018100 Sobic004G018100 Sobic001G233700--Sobic004G018100 Sobic002G179900 Sobic002G179900 Sobic001G233700--Sobic002G179900 Sobic009G243800 Sobic009G243800 Sobic001G233700--Sobic009G243800 Sobic010G112300 Sobic010G112300 Sobic001G233700--Sobic010G112300 Sobic001G443900 Sobic001G443900 Sobic001G233700--Sobic001G443900 Sobic004G236400 Sobic004G236400 Sobic001G233700--Sobic004G236400 Sobic007G161800 Sobic007G161800 Sobic001G233700--Sobic007G161800 Sobic003G259100 Sobic003G259100 Sobic001G233700--Sobic003G259100 Sobic008G177200--Sobic001G233700 Sobic003G100800 Sobic003G100800 Sobic008G177200--Sobic003G100800 Sobic003G305200 Sobic003G305200 Sobic008G177200--Sobic003G305200 Sobic001G261200 Sobic001G261200 Sobic008G177200--Sobic001G261200 Sobic006G240700 Sobic006G240700 Sobic008G177200--Sobic006G240700 Sobic001G130000 Sobic001G130000 Sobic008G177200--Sobic001G130000 Sobic007G024700 Sobic007G024700 Sobic008G177200--Sobic007G024700 Sobic002G230100 Sobic002G230100 Sobic008G177200--Sobic002G230100 Sobic004G244400 Sobic004G244400 Sobic008G177200--Sobic004G244400 Sobic008G090900 Sobic008G090900 Sobic004G018100--Sobic008G090900 Sobic003G040000 Sobic003G040000 Sobic004G018100--Sobic003G040000 Sobic006G021800 Sobic006G021800 Sobic004G018100--Sobic006G021800 Sobic006G058100 Sobic006G058100 Sobic004G018100--Sobic006G058100 Sobic004G263200 Sobic004G263200 Sobic004G018100--Sobic004G263200 Sobic002G181132 Sobic002G181132 Sobic004G018100--Sobic002G181132 Sobic007G095500 Sobic007G095500 Sobic004G018100--Sobic007G095500 Sobic004G214400 Sobic004G214400 Sobic004G018100--Sobic004G214400 Sobic003G345900 Sobic003G345900 Sobic004G018100--Sobic003G345900 Sobic009G010600 Sobic009G010600 Sobic002G179900--Sobic009G010600 SobicK042000 SobicK042000 Sobic002G179900--SobicK042000 Sobic002G179900--Sobic007G024700 Sobic009G249200 Sobic009G249200 Sobic002G179900--Sobic009G249200 Sobic004G052900 Sobic004G052900 Sobic002G179900--Sobic004G052900 Sobic004G113400 Sobic004G113400 Sobic002G179900--Sobic004G113400 Sobic006G245400 Sobic006G245400 Sobic002G179900--Sobic006G245400 Sobic007G172400 Sobic007G172400 Sobic002G179900--Sobic007G172400 Sobic002G315200 Sobic002G315200 Sobic002G179900--Sobic002G315200 Sobic001G534800 Sobic001G534800 Sobic009G243800--Sobic001G534800 Sobic005G003300 Sobic005G003300 Sobic009G243800--Sobic005G003300 Sobic010G232600 Sobic010G232600 Sobic009G243800--Sobic010G232600 Sobic002G270500 Sobic002G270500 Sobic009G243800--Sobic002G270500 Sobic001G413900 Sobic001G413900 Sobic009G243800--Sobic001G413900 Sobic008G003700 Sobic008G003700 Sobic009G243800--Sobic008G003700 Sobic001G281100 Sobic001G281100 Sobic009G243800--Sobic001G281100 Sobic004G004300 Sobic004G004300 Sobic009G243800--Sobic004G004300 Sobic006G126100 Sobic006G126100 Sobic009G243800--Sobic006G126100 Sobic010G112300--Sobic002G270500 Sobic001G207400 Sobic001G207400 Sobic010G112300--Sobic001G207400 Sobic003G428400 Sobic003G428400 Sobic010G112300--Sobic003G428400 Sobic010G112300--Sobic004G113400 Sobic002G430000 Sobic002G430000 Sobic010G112300--Sobic002G430000 Sobic010G205200 Sobic010G205200 Sobic010G112300--Sobic010G205200 Sobic008G167800 Sobic008G167800 Sobic010G112300--Sobic008G167800 Sobic004G355000 Sobic004G355000 Sobic010G112300--Sobic004G355000 Sobic009G094300 Sobic009G094300 Sobic010G112300--Sobic009G094300 Sobic006G214500 Sobic006G214500 Sobic001G443900--Sobic006G214500 Sobic009G121100 Sobic009G121100 Sobic001G443900--Sobic009G121100 Sobic003G005800 Sobic003G005800 Sobic001G443900--Sobic003G005800 Sobic001G373200 Sobic001G373200 Sobic001G443900--Sobic001G373200 Sobic003G407300 Sobic003G407300 Sobic001G443900--Sobic003G407300 Sobic006G138400 Sobic006G138400 Sobic001G443900--Sobic006G138400 Sobic001G447500 Sobic001G447500 Sobic001G443900--Sobic001G447500 Sobic001G156100 Sobic001G156100 Sobic001G443900--Sobic001G156100 Sobic009G229800 Sobic009G229800 Sobic001G443900--Sobic009G229800 Sobic004G236400--Sobic006G058100 Sobic001G166600 Sobic001G166600 Sobic004G236400--Sobic001G166600 Sobic007G225000 Sobic007G225000 Sobic004G236400--Sobic007G225000 Sobic001G214600 Sobic001G214600 Sobic004G236400--Sobic001G214600 Sobic001G014900 Sobic001G014900 Sobic004G236400--Sobic001G014900 Sobic002G143500 Sobic002G143500 Sobic004G236400--Sobic002G143500 Sobic004G314000 Sobic004G314000 Sobic004G236400--Sobic004G314000 Sobic003G067100 Sobic003G067100 Sobic004G236400--Sobic003G067100 Sobic005G001000 Sobic005G001000 Sobic004G236400--Sobic005G001000 Sobic003G141500 Sobic003G141500 Sobic007G161800--Sobic003G141500 Sobic007G161800--Sobic004G113400 Sobic001G178700 Sobic001G178700 Sobic007G161800--Sobic001G178700 Sobic004G329400 Sobic004G329400 Sobic007G161800--Sobic004G329400 Sobic007G161800--Sobic009G010600 Sobic001G016600 Sobic001G016600 Sobic007G161800--Sobic001G016600 Sobic009G094900 Sobic009G094900 Sobic007G161800--Sobic009G094900 Sobic009G047200 Sobic009G047200 Sobic007G161800--Sobic009G047200 Sobic007G002300 Sobic007G002300 Sobic007G161800--Sobic007G002300 Sobic003G259100--Sobic004G113400 Sobic008G099800 Sobic008G099800 Sobic003G259100--Sobic008G099800 Sobic001G050600 Sobic001G050600 Sobic003G259100--Sobic001G050600 Sobic003G072200 Sobic003G072200 Sobic003G259100--Sobic003G072200 Sobic001G273700 Sobic001G273700 Sobic003G259100--Sobic001G273700 Sobic001G058700 Sobic001G058700 Sobic003G259100--Sobic001G058700 Sobic001G347500 Sobic001G347500 Sobic003G259100--Sobic001G347500 Sobic001G219900 Sobic001G219900 Sobic003G259100--Sobic001G219900 Sobic010G034000 Sobic010G034000 Sobic003G259100--Sobic010G034000
Octagon: transcription factors


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