Gene annotation
Transcriptome id Sobic.001G261573.1,Sobic.001G261573.2
Synonym -
Functional annotation -
UniProt C6JRV6 , A0A1Z5S7M4 , C6JRV5 , A0A120GUT5
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF364
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G34830 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os10g10170.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a003887
Brachypodium KQJ96371
Barley HORVU1Hr1G032670.9 , HORVU1Hr1G032670.8 , HORVU1Hr1G032610.6 , HORVU1Hr1G032610.5 , HORVU1Hr1G032610.4 , HORVU1Hr1G032610.3 , HORVU1Hr1G032610.2 , HORVU1Hr1G032610.1 , HORVU1Hr1G032670.11 , HORVU1Hr1G032670.10 , HORVU1Hr1G032670.12 , HORVU1Hr1G032670.2 , HORVU1Hr1G032670.1 , HORVU1Hr1G032670.3 , HORVU1Hr1G032670.5 , HORVU1Hr1G032670.4 , HORVU1Hr1G032670.7 , HORVU1Hr1G032670.6
Wheat TraesCS1B02G150100 , TraesCS1A02G133500 , TraesCS1A02G133500 , TraesCS1A02G133500 , TraesCS1A02G133500 , TraesCS1A02G133500 , TraesCS1D02G124400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G254000 PPR repeat domain containing protein, putative, expressed -
2 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
3 Sobic.010G176550 - -
4 Sobic.002G231200 Rf1, mitochondrial precursor, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
5 Sobic.005G039500 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
6 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
7 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
8 Sobic.003G161000 powdery mildew resistance protein PM3F, putative, expressed -
9 Sobic.009G209300 starch synthase, putative, expressed -
10 Sobic.009G170000 - -
11 Sobic.007G116200 expressed protein K13217: PRPF39, pre-mRNA-processing factor 39
12 Sobic.003G247400 OsCttP1 - Putative C-terminal processing peptidase homologue, expressed -
13 Sobic.003G017100 ABC transporter, ATP-binding protein, putative, expressed -
14 Sobic.004G206200 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
15 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
16 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
17 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
18 Sobic.001G035900 expressed protein K13156: U11/U12 small nuclear ribonucleoprotein 48 kDa protein
19 Sobic.001G202000 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
20 Sobic.001G198100 PAP fibrillin family domain containing protein, expressed -


Gene co-expression network
sample Sobic001G261573 Sobic001G261573 Sobic003G254000 Sobic003G254000 Sobic001G261573--Sobic003G254000 Sobic007G185700 Sobic007G185700 Sobic001G261573--Sobic007G185700 Sobic010G176550 Sobic010G176550 Sobic001G261573--Sobic010G176550 Sobic002G231200 Sobic002G231200 Sobic001G261573--Sobic002G231200 Sobic005G039500 Sobic005G039500 Sobic001G261573--Sobic005G039500 Sobic006G058100 Sobic006G058100 Sobic001G261573--Sobic006G058100 Sobic003G234900 Sobic003G234900 Sobic001G261573--Sobic003G234900 Sobic003G161000 Sobic003G161000 Sobic001G261573--Sobic003G161000 Sobic009G209300 Sobic009G209300 Sobic001G261573--Sobic009G209300 Sobic001G035900 Sobic001G035900 Sobic003G254000--Sobic001G035900 Sobic003G254000--Sobic001G261573 Sobic004G035000 Sobic004G035000 Sobic003G254000--Sobic004G035000 Sobic002G031400 Sobic002G031400 Sobic003G254000--Sobic002G031400 Sobic003G254000--Sobic005G039500 Sobic002G064750 Sobic002G064750 Sobic003G254000--Sobic002G064750 Sobic001G274200 Sobic001G274200 Sobic003G254000--Sobic001G274200 Sobic007G099100 Sobic007G099100 Sobic003G254000--Sobic007G099100 Sobic003G429650 Sobic003G429650 Sobic003G254000--Sobic003G429650 Sobic001G054100 Sobic001G054100 Sobic007G185700--Sobic001G054100 Sobic007G185700--Sobic003G234900 Sobic003G141100 Sobic003G141100 Sobic007G185700--Sobic003G141100 Sobic001G500600 Sobic001G500600 Sobic007G185700--Sobic001G500600 Sobic003G217700 Sobic003G217700 Sobic007G185700--Sobic003G217700 Sobic001G530900 Sobic001G530900 Sobic007G185700--Sobic001G530900 Sobic003G352500 Sobic003G352500 Sobic007G185700--Sobic003G352500 Sobic007G185700--Sobic001G261573 Sobic005G231100 Sobic005G231100 Sobic007G185700--Sobic005G231100 Sobic010G176550--Sobic002G031400 Sobic004G034800 Sobic004G034800 Sobic010G176550--Sobic004G034800 Sobic010G176550--Sobic001G261573 Sobic010G176550--Sobic003G217700 Sobic010G176550--Sobic007G185700 Sobic010G176550--Sobic001G035900 Sobic010G176550--Sobic003G234900 Sobic010G005600 Sobic010G005600 Sobic010G176550--Sobic010G005600 Sobic010G032900 Sobic010G032900 Sobic010G176550--Sobic010G032900 Sobic001G327800 Sobic001G327800 Sobic002G231200--Sobic001G327800 Sobic002G231200--Sobic001G261573 Sobic003G343400 Sobic003G343400 Sobic002G231200--Sobic003G343400 Sobic002G231200--Sobic003G234900 Sobic006G010900 Sobic006G010900 Sobic002G231200--Sobic006G010900 Sobic003G085100 Sobic003G085100 Sobic002G231200--Sobic003G085100 Sobic001G531500 Sobic001G531500 Sobic002G231200--Sobic001G531500 Sobic002G118200 Sobic002G118200 Sobic002G231200--Sobic002G118200 Sobic003G150800 Sobic003G150800 Sobic002G231200--Sobic003G150800 Sobic005G039500--Sobic003G254000 Sobic001G067850 Sobic001G067850 Sobic005G039500--Sobic001G067850 Sobic003G113200 Sobic003G113200 Sobic005G039500--Sobic003G113200 Sobic005G039500--Sobic001G261573 Sobic005G039500--Sobic003G429650 Sobic009G212700 Sobic009G212700 Sobic005G039500--Sobic009G212700 Sobic002G243900 Sobic002G243900 Sobic005G039500--Sobic002G243900 Sobic005G039500--Sobic004G035000 Sobic007G037900 Sobic007G037900 Sobic005G039500--Sobic007G037900 Sobic002G143500 Sobic002G143500 Sobic006G058100--Sobic002G143500 Sobic003G067100 Sobic003G067100 Sobic006G058100--Sobic003G067100 Sobic003G040000 Sobic003G040000 Sobic006G058100--Sobic003G040000 Sobic001G166600 Sobic001G166600 Sobic006G058100--Sobic001G166600 Sobic004G236400 Sobic004G236400 Sobic006G058100--Sobic004G236400 Sobic006G058100--Sobic001G261573 Sobic006G058100--Sobic010G176550 Sobic004G225600 Sobic004G225600 Sobic006G058100--Sobic004G225600 Sobic009G094900 Sobic009G094900 Sobic006G058100--Sobic009G094900 Sobic004G163800 Sobic004G163800 Sobic003G234900--Sobic004G163800 Sobic003G234900--Sobic007G185700 Sobic003G234900--Sobic003G067100 Sobic003G234900--Sobic005G231100 Sobic002G431300 Sobic002G431300 Sobic003G234900--Sobic002G431300 Sobic002G043600 Sobic002G043600 Sobic003G234900--Sobic002G043600 Sobic003G234900--Sobic003G141100 Sobic002G343400 Sobic002G343400 Sobic003G234900--Sobic002G343400 Sobic006G038500 Sobic006G038500 Sobic003G234900--Sobic006G038500 Sobic004G001300 Sobic004G001300 Sobic003G161000--Sobic004G001300 Sobic003G161000--Sobic001G261573 Sobic003G161000--Sobic010G176550 Sobic003G161000--Sobic002G031400 Sobic003G442700 Sobic003G442700 Sobic003G161000--Sobic003G442700 Sobic003G003600 Sobic003G003600 Sobic003G161000--Sobic003G003600 Sobic003G149300 Sobic003G149300 Sobic003G161000--Sobic003G149300 Sobic003G161000--Sobic005G039500 Sobic002G402600 Sobic002G402600 Sobic003G161000--Sobic002G402600 Sobic003G332800 Sobic003G332800 Sobic009G209300--Sobic003G332800 Sobic006G216800 Sobic006G216800 Sobic009G209300--Sobic006G216800 Sobic009G209300--Sobic003G429650 Sobic006G182900 Sobic006G182900 Sobic009G209300--Sobic006G182900 Sobic006G048500 Sobic006G048500 Sobic009G209300--Sobic006G048500 Sobic007G116200 Sobic007G116200 Sobic009G209300--Sobic007G116200 Sobic002G006600 Sobic002G006600 Sobic009G209300--Sobic002G006600 Sobic003G148000 Sobic003G148000 Sobic009G209300--Sobic003G148000 Sobic001G036050 Sobic001G036050 Sobic009G209300--Sobic001G036050
Octagon: transcription factors


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