Gene annotation
Transcriptome id Sobic.002G230100.6,Sobic.002G230100.5,Sobic.002G230100.4
Synonym BCA5, ATBCA5, Sb02g026930
Functional annotation carbonic anhydrase, chloroplast precursor, putative, expressed
UniProt A0A1W0W5H4 , A0A1W0W5L0 , A0A1B6QD00
Pfam PF00484
Panther DB PTHR11002 PTHR11002:SF12
NCBI CDD KOG1578; Predicted carbonic anhydrase involved in protection against oxidative damage
KEGG Orthology K01673; cynT, carbonic anhydrase
Gene Ontology GO:0008270; zinc ion binding GO:0004089carbonate dehydratase activity


Orthologs (automatic annotation)
TAIR AT4G33580 : beta carbonic anhydrase 5
RAP-DB (Rice) LOC_Os09g28910.2,LOC_Os09g28910.1 : carbonic anhydrase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a014097 , Zm00025a047309
Brachypodium KQJ90562 , KQJ90563 , KQJ90564 , KQJ90565 , PNT64741
Barley HORVU5Hr1G069600.3 , HORVU5Hr1G069600.18 , HORVU5Hr1G069600.19 , HORVU5Hr1G069600.12 , HORVU5Hr1G069600.13 , HORVU5Hr1G069600.10 , HORVU5Hr1G069600.11 , HORVU5Hr1G069600.16 , HORVU5Hr1G069600.17 , HORVU5Hr1G069600.14 , HORVU5Hr1G069600.15 , HORVU5Hr1G069600.1 , HORVU5Hr1G069600.2 , HORVU5Hr1G069600.4 , HORVU5Hr1G069600.5 , HORVU5Hr1G069600.6 , HORVU5Hr1G069600.7 , HORVU5Hr1G069600.8 , HORVU5Hr1G069600.9
Wheat TraesCS5B02G243100 , TraesCS5B02G243100 , TraesCS5A02G245700 , TraesCS5A02G245700 , TraesCS5D02G252400 , TraesCS5D02G252400 , TraesCS5D02G252400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G230100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G053700 glyoxalase family protein, putative, expressed K00457: HPD, 4-hydroxyphenylpyruvate dioxygenase
2 Sobic.004G183600 molybdenum cofactor biosynthesis protein 1, putative, expressed K03639: moaA, GTP 3',8-cyclase
3 Sobic.002G399100 zinc finger, RING-type, putative, expressed K15688: E3 ubiquitin-protein ligase MUL1
4 Sobic.010G153700 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
5 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
6 Sobic.002G116900 expressed protein -
7 Sobic.001G056601 - K01695: tryptophan synthase alpha chain
8 Sobic.001G137100 homeodomain protein, putative, expressed -
9 Sobic.001G383300 ABC transporter, ATP-binding protein, putative, expressed K05663: ATP-binding cassette, subfamily B, mitochondrial transporter ATM
10 Sobic.010G013800 START domain containing protein, expressed -
11 Sobic.001G290000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
12 Sobic.004G341900 lecithine cholesterol acyltransferase, putative, expressed -
13 Sobic.010G224000 molybdenum cofactor sulfurase, putative, expressed K15631: molybdenum cofactor sulfurtransferase
14 Sobic.002G315200 DNA-binding bromodomain-containing protein, putative, expressed -
15 Sobic.004G296400 amino acid permease, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
16 Sobic.007G158300 phosphoglycerate mutase, putative, expressed K15634: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
17 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
18 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
19 Sobic.010G251000 ubiquitin-conjugating enzyme, putative, expressed K10579: UBE2M, ubiquitin-conjugating enzyme E2 M
20 Sobic.002G054300 ABC transporter, ATP-binding protein, putative, expressed K06184: ATP-binding cassette, subfamily F, member 1


Gene co-expression network
sample Sobic002G230100 Sobic002G230100 Sobic004G053700 Sobic004G053700 Sobic002G230100--Sobic004G053700 Sobic004G183600 Sobic004G183600 Sobic002G230100--Sobic004G183600 Sobic002G399100 Sobic002G399100 Sobic002G230100--Sobic002G399100 Sobic010G153700 Sobic010G153700 Sobic002G230100--Sobic010G153700 Sobic001G270400 Sobic001G270400 Sobic002G230100--Sobic001G270400 Sobic002G116900 Sobic002G116900 Sobic002G230100--Sobic002G116900 Sobic001G056601 Sobic001G056601 Sobic002G230100--Sobic001G056601 Sobic001G137100 Sobic001G137100 Sobic002G230100--Sobic001G137100 Sobic001G383300 Sobic001G383300 Sobic002G230100--Sobic001G383300 Sobic006G087700 Sobic006G087700 Sobic004G053700--Sobic006G087700 Sobic004G053700--Sobic002G230100 Sobic003G322700 Sobic003G322700 Sobic004G053700--Sobic003G322700 Sobic004G042300 Sobic004G042300 Sobic004G053700--Sobic004G042300 Sobic007G075400 Sobic007G075400 Sobic004G053700--Sobic007G075400 Sobic010G169000 Sobic010G169000 Sobic004G053700--Sobic010G169000 Sobic003G320700 Sobic003G320700 Sobic004G053700--Sobic003G320700 Sobic004G331100 Sobic004G331100 Sobic004G053700--Sobic004G331100 Sobic002G009700 Sobic002G009700 Sobic004G053700--Sobic002G009700 Sobic001G047400 Sobic001G047400 Sobic004G183600--Sobic001G047400 Sobic004G183600--Sobic001G270400 Sobic004G183600--Sobic001G137100 Sobic004G183600--Sobic002G116900 Sobic004G183600--Sobic002G230100 Sobic003G354400 Sobic003G354400 Sobic004G183600--Sobic003G354400 Sobic001G120300 Sobic001G120300 Sobic004G183600--Sobic001G120300 Sobic007G024700 Sobic007G024700 Sobic004G183600--Sobic007G024700 Sobic001G394600 Sobic001G394600 Sobic004G183600--Sobic001G394600 Sobic001G413500 Sobic001G413500 Sobic002G399100--Sobic001G413500 Sobic001G497300 Sobic001G497300 Sobic002G399100--Sobic001G497300 Sobic001G512700 Sobic001G512700 Sobic002G399100--Sobic001G512700 Sobic007G104800 Sobic007G104800 Sobic002G399100--Sobic007G104800 Sobic004G205600 Sobic004G205600 Sobic002G399100--Sobic004G205600 Sobic001G107500 Sobic001G107500 Sobic002G399100--Sobic001G107500 Sobic003G298100 Sobic003G298100 Sobic002G399100--Sobic003G298100 Sobic002G399100--Sobic010G153700 Sobic003G029700 Sobic003G029700 Sobic002G399100--Sobic003G029700 Sobic002G315200 Sobic002G315200 Sobic010G153700--Sobic002G315200 Sobic009G026500 Sobic009G026500 Sobic010G153700--Sobic009G026500 Sobic009G191000 Sobic009G191000 Sobic010G153700--Sobic009G191000 Sobic010G153700--Sobic001G512700 Sobic002G008900 Sobic002G008900 Sobic010G153700--Sobic002G008900 Sobic002G134200 Sobic002G134200 Sobic010G153700--Sobic002G134200 Sobic002G006900 Sobic002G006900 Sobic010G153700--Sobic002G006900 Sobic001G071400 Sobic001G071400 Sobic010G153700--Sobic001G071400 Sobic001G214300 Sobic001G214300 Sobic010G153700--Sobic001G214300 Sobic001G270400--Sobic007G024700 Sobic009G094300 Sobic009G094300 Sobic001G270400--Sobic009G094300 Sobic010G205800 Sobic010G205800 Sobic001G270400--Sobic010G205800 Sobic003G109100 Sobic003G109100 Sobic001G270400--Sobic003G109100 Sobic001G270400--Sobic001G137100 Sobic002G270500 Sobic002G270500 Sobic001G270400--Sobic002G270500 Sobic001G121200 Sobic001G121200 Sobic001G270400--Sobic001G121200 Sobic004G052900 Sobic004G052900 Sobic001G270400--Sobic004G052900 Sobic001G199100 Sobic001G199100 Sobic001G270400--Sobic001G199100 Sobic002G116900--Sobic001G047400 Sobic004G296400 Sobic004G296400 Sobic002G116900--Sobic004G296400 Sobic010G251000 Sobic010G251000 Sobic002G116900--Sobic010G251000 Sobic005G168600 Sobic005G168600 Sobic002G116900--Sobic005G168600 Sobic009G165800 Sobic009G165800 Sobic002G116900--Sobic009G165800 Sobic002G116900--Sobic004G183600 Sobic010G051300 Sobic010G051300 Sobic002G116900--Sobic010G051300 Sobic002G116900--Sobic001G270400 Sobic006G244700 Sobic006G244700 Sobic002G116900--Sobic006G244700 Sobic010G176200 Sobic010G176200 Sobic001G056601--Sobic010G176200 Sobic001G056601--Sobic002G230100 Sobic003G160200 Sobic003G160200 Sobic001G056601--Sobic003G160200 Sobic001G382000 Sobic001G382000 Sobic001G056601--Sobic001G382000 Sobic007G194300 Sobic007G194300 Sobic001G056601--Sobic007G194300 Sobic001G168250 Sobic001G168250 Sobic001G056601--Sobic001G168250 Sobic001G032700 Sobic001G032700 Sobic001G056601--Sobic001G032700 Sobic001G327800 Sobic001G327800 Sobic001G056601--Sobic001G327800 Sobic001G056601--Sobic002G399100 Sobic001G390800 Sobic001G390800 Sobic001G137100--Sobic001G390800 Sobic001G137100--Sobic007G024700 Sobic010G228400 Sobic010G228400 Sobic001G137100--Sobic010G228400 Sobic002G132000 Sobic002G132000 Sobic001G137100--Sobic002G132000 Sobic001G137100--Sobic001G270400 Sobic002G130800 Sobic002G130800 Sobic001G137100--Sobic002G130800 Sobic001G137100--Sobic009G094300 Sobic002G111000 Sobic002G111000 Sobic001G137100--Sobic002G111000 Sobic002G427050 Sobic002G427050 Sobic001G137100--Sobic002G427050 Sobic008G047800 Sobic008G047800 Sobic001G383300--Sobic008G047800 Sobic004G084300 Sobic004G084300 Sobic001G383300--Sobic004G084300 Sobic001G222500 Sobic001G222500 Sobic001G383300--Sobic001G222500 Sobic010G032900 Sobic010G032900 Sobic001G383300--Sobic010G032900 Sobic009G040600 Sobic009G040600 Sobic001G383300--Sobic009G040600 Sobic003G141500 Sobic003G141500 Sobic001G383300--Sobic003G141500 Sobic008G103200 Sobic008G103200 Sobic001G383300--Sobic008G103200 Sobic001G392300 Sobic001G392300 Sobic001G383300--Sobic001G392300 Sobic003G164200 Sobic003G164200 Sobic001G383300--Sobic003G164200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.