Gene annotation
Transcriptome id Sobic.001G056601.1,Sobic.001G056601.2
Synonym -
Functional annotation -
UniProt A0A1Z5S4I6 , A0A1Z5S4F7
Pfam PF00977
Panther DB -
NCBI CDD -
KEGG Orthology K01695; tryptophan synthase alpha chain
Gene Ontology GO:0000105; histidine biosynthetic process


Orthologs (automatic annotation)
TAIR AT4G02610 : tryptophan synthase alpha chain,Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os03g58260.2 : indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a008570
Brachypodium KQK12700
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G176200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.002G230100 carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
3 Sobic.003G160200 multidrug resistance-associated protein, putative, expressed K05665: ATP-binding cassette, subfamily C (CFTR/MRP), member 1
4 Sobic.001G382000 AGC_AGC_other_RS6K_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed K04688: ribosomal protein S6 kinase beta
5 Sobic.007G194300 sulfite oxidase, putative, expressed K00387: sulfite oxidase
6 Sobic.001G168250 - -
7 Sobic.001G032700 heat shock protein DnaJ, putative, expressed -
8 Sobic.001G327800 uncharacterized mscS family protein, putative, expressed K16052: ynaI, MscS family membrane protein
9 Sobic.002G399100 zinc finger, RING-type, putative, expressed K15688: E3 ubiquitin-protein ligase MUL1
10 Sobic.002G231200 Rf1, mitochondrial precursor, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
11 Sobic.007G171400 low molecular weight protein-tyrosine-phosphatase slr0328, putative, expressed K01104: protein-tyrosine phosphatase
12 Sobic.004G299000 expressed protein -
13 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
14 Sobic.007G095500 expressed protein -
15 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
16 Sobic.003G247500 expressed protein -
17 Sobic.009G094900 sugar porter, putative, expressed -
18 Sobic.004G193700 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
19 Sobic.004G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
20 Sobic.001G065600 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase


Gene co-expression network
sample Sobic001G056601 Sobic001G056601 Sobic010G176200 Sobic010G176200 Sobic001G056601--Sobic010G176200 Sobic002G230100 Sobic002G230100 Sobic001G056601--Sobic002G230100 Sobic003G160200 Sobic003G160200 Sobic001G056601--Sobic003G160200 Sobic001G382000 Sobic001G382000 Sobic001G056601--Sobic001G382000 Sobic007G194300 Sobic007G194300 Sobic001G056601--Sobic007G194300 Sobic001G168250 Sobic001G168250 Sobic001G056601--Sobic001G168250 Sobic001G032700 Sobic001G032700 Sobic001G056601--Sobic001G032700 Sobic001G327800 Sobic001G327800 Sobic001G056601--Sobic001G327800 Sobic002G399100 Sobic002G399100 Sobic001G056601--Sobic002G399100 Sobic008G130000 Sobic008G130000 Sobic010G176200--Sobic008G130000 Sobic003G313300 Sobic003G313300 Sobic010G176200--Sobic003G313300 Sobic004G347800 Sobic004G347800 Sobic010G176200--Sobic004G347800 Sobic004G356400 Sobic004G356400 Sobic010G176200--Sobic004G356400 Sobic003G229300 Sobic003G229300 Sobic010G176200--Sobic003G229300 Sobic010G176200--Sobic003G160200 Sobic001G017300 Sobic001G017300 Sobic010G176200--Sobic001G017300 Sobic007G123500 Sobic007G123500 Sobic010G176200--Sobic007G123500 Sobic001G333800 Sobic001G333800 Sobic010G176200--Sobic001G333800 Sobic004G053700 Sobic004G053700 Sobic002G230100--Sobic004G053700 Sobic004G183600 Sobic004G183600 Sobic002G230100--Sobic004G183600 Sobic002G230100--Sobic002G399100 Sobic010G153700 Sobic010G153700 Sobic002G230100--Sobic010G153700 Sobic001G270400 Sobic001G270400 Sobic002G230100--Sobic001G270400 Sobic002G116900 Sobic002G116900 Sobic002G230100--Sobic002G116900 Sobic002G230100--Sobic001G056601 Sobic001G137100 Sobic001G137100 Sobic002G230100--Sobic001G137100 Sobic001G383300 Sobic001G383300 Sobic002G230100--Sobic001G383300 Sobic003G160200--Sobic001G168250 Sobic003G160200--Sobic010G176200 Sobic003G160200--Sobic008G130000 Sobic003G160200--Sobic007G123500 Sobic009G113800 Sobic009G113800 Sobic003G160200--Sobic009G113800 Sobic002G193800 Sobic002G193800 Sobic003G160200--Sobic002G193800 Sobic008G115900 Sobic008G115900 Sobic003G160200--Sobic008G115900 Sobic009G237100 Sobic009G237100 Sobic003G160200--Sobic009G237100 Sobic003G160200--Sobic004G356400 Sobic001G382000--Sobic001G137100 Sobic006G087700 Sobic006G087700 Sobic001G382000--Sobic006G087700 Sobic009G249200 Sobic009G249200 Sobic001G382000--Sobic009G249200 Sobic007G024700 Sobic007G024700 Sobic001G382000--Sobic007G024700 Sobic009G094300 Sobic009G094300 Sobic001G382000--Sobic009G094300 Sobic003G109100 Sobic003G109100 Sobic001G382000--Sobic003G109100 Sobic004G052900 Sobic004G052900 Sobic001G382000--Sobic004G052900 Sobic001G373200 Sobic001G373200 Sobic001G382000--Sobic001G373200 Sobic008G070500 Sobic008G070500 Sobic001G382000--Sobic008G070500 Sobic002G143500 Sobic002G143500 Sobic007G194300--Sobic002G143500 Sobic005G106500 Sobic005G106500 Sobic007G194300--Sobic005G106500 Sobic003G141500 Sobic003G141500 Sobic007G194300--Sobic003G141500 Sobic001G002000 Sobic001G002000 Sobic007G194300--Sobic001G002000 Sobic001G227200 Sobic001G227200 Sobic007G194300--Sobic001G227200 Sobic009G094900 Sobic009G094900 Sobic007G194300--Sobic009G094900 Sobic008G047800 Sobic008G047800 Sobic007G194300--Sobic008G047800 Sobic002G343901 Sobic002G343901 Sobic007G194300--Sobic002G343901 Sobic010G277500 Sobic010G277500 Sobic007G194300--Sobic010G277500 Sobic001G168250--Sobic003G160200 Sobic001G168250--Sobic008G130000 Sobic001G168250--Sobic002G193800 Sobic004G274100 Sobic004G274100 Sobic001G168250--Sobic004G274100 Sobic001G168250--Sobic010G176200 Sobic001G168250--Sobic009G113800 Sobic001G308200 Sobic001G308200 Sobic001G168250--Sobic001G308200 Sobic001G168250--Sobic009G237100 Sobic001G168250--Sobic007G123500 Sobic004G054400 Sobic004G054400 Sobic001G032700--Sobic004G054400 Sobic001G512500 Sobic001G512500 Sobic001G032700--Sobic001G512500 Sobic001G032700--Sobic001G327800 Sobic005G014700 Sobic005G014700 Sobic001G032700--Sobic005G014700 Sobic004G163800 Sobic004G163800 Sobic001G032700--Sobic004G163800 Sobic003G343400 Sobic003G343400 Sobic001G032700--Sobic003G343400 Sobic001G309300 Sobic001G309300 Sobic001G032700--Sobic001G309300 Sobic001G032700--Sobic001G308200 Sobic002G231200 Sobic002G231200 Sobic001G032700--Sobic002G231200 Sobic001G327800--Sobic002G231200 Sobic001G327800--Sobic005G014700 Sobic001G327800--Sobic004G163800 Sobic001G327800--Sobic003G343400 Sobic005G082200 Sobic005G082200 Sobic001G327800--Sobic005G082200 Sobic009G164400 Sobic009G164400 Sobic001G327800--Sobic009G164400 Sobic001G327800--Sobic001G032700 Sobic001G327800--Sobic004G054400 Sobic003G067100 Sobic003G067100 Sobic001G327800--Sobic003G067100 Sobic001G413500 Sobic001G413500 Sobic002G399100--Sobic001G413500 Sobic001G497300 Sobic001G497300 Sobic002G399100--Sobic001G497300 Sobic001G512700 Sobic001G512700 Sobic002G399100--Sobic001G512700 Sobic007G104800 Sobic007G104800 Sobic002G399100--Sobic007G104800 Sobic004G205600 Sobic004G205600 Sobic002G399100--Sobic004G205600 Sobic001G107500 Sobic001G107500 Sobic002G399100--Sobic001G107500 Sobic003G298100 Sobic003G298100 Sobic002G399100--Sobic003G298100 Sobic002G399100--Sobic010G153700 Sobic003G029700 Sobic003G029700 Sobic002G399100--Sobic003G029700
Octagon: transcription factors


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