Gene annotation
Transcriptome id Sobic.008G115500.1
Synonym Sb08g016910, ATSYP132, SYP132
Functional annotation syntaxin, putative, expressed
UniProt C5YPA6
Pfam PF05739 PF00804
Panther DB PTHR19957 PTHR19957:SF131
NCBI CDD KOG0810; SNARE protein Syntaxin 1 and related proteins
KEGG Orthology K08486; syntaxin 1B/2/3
Gene Ontology GO:0005515; protein binding GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT3G03800 : syntaxin of plants 131
RAP-DB (Rice) LOC_Os06g07200.1 : syntaxin, putative, expressed
MaizeGDB (Corn) Zm00025a025567
Brachypodium -
Barley HORVU5Hr1G026120.4 , HORVU5Hr1G026120.1 , HORVU5Hr1G026120.2 , HORVU5Hr1G026120.3
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G115500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G074200 LRR receptor-like protein kinase, putative, expressed -
2 Sobic.004G271700 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
3 Sobic.009G127000 leucine-rich repeat family protein, putative, expressed -
4 Sobic.003G002400 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
5 Sobic.001G516100 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
6 Sobic.003G367300 actin, putative, expressed K10355: actin, other eukaryote
7 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
8 Sobic.001G103200 DNA binding protein, putative, expressed -
9 Sobic.001G180900 secretory carrier-associated membrane protein 4, putative, expressed -
10 Sobic.007G125900 protein kinase domain containing protein, expressed -
11 Sobic.001G434900 serine palmitoyltransferase 1, putative, expressed K00654: serine palmitoyltransferase
12 Sobic.005G035300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phytosulfokines precursor, putative, expressed -
13 Sobic.004G350300 No apical meristem protein, putative, expressed -
14 Sobic.002G083266 - K00326: cytochrome-b5 reductase
15 Sobic.009G079300 receptor protein kinase-like, putative, expressed -
16 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
17 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
18 Sobic.002G122700 expressed protein -
19 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
20 Sobic.009G135100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipase, putative, expressed -


Gene co-expression network
sample Sobic008G115500 Sobic008G115500 Sobic001G074200 Sobic001G074200 Sobic008G115500--Sobic001G074200 Sobic004G271700 Sobic004G271700 Sobic008G115500--Sobic004G271700 Sobic009G127000 Sobic009G127000 Sobic008G115500--Sobic009G127000 Sobic003G002400 Sobic003G002400 Sobic008G115500--Sobic003G002400 Sobic001G516100 Sobic001G516100 Sobic008G115500--Sobic001G516100 Sobic003G367300 Sobic003G367300 Sobic008G115500--Sobic003G367300 Sobic001G085900 Sobic001G085900 Sobic008G115500--Sobic001G085900 Sobic001G103200 Sobic001G103200 Sobic008G115500--Sobic001G103200 Sobic001G180900 Sobic001G180900 Sobic008G115500--Sobic001G180900 Sobic001G074200--Sobic009G127000 Sobic007G125900 Sobic007G125900 Sobic001G074200--Sobic007G125900 Sobic001G074200--Sobic008G115500 Sobic002G379866 Sobic002G379866 Sobic001G074200--Sobic002G379866 Sobic001G147200 Sobic001G147200 Sobic001G074200--Sobic001G147200 Sobic001G157200 Sobic001G157200 Sobic001G074200--Sobic001G157200 Sobic005G117400 Sobic005G117400 Sobic001G074200--Sobic005G117400 Sobic002G118600 Sobic002G118600 Sobic001G074200--Sobic002G118600 Sobic010G228000 Sobic010G228000 Sobic001G074200--Sobic010G228000 Sobic004G271700--Sobic008G115500 Sobic004G271700--Sobic001G516100 Sobic004G271700--Sobic003G002400 Sobic009G219900 Sobic009G219900 Sobic004G271700--Sobic009G219900 Sobic001G158500 Sobic001G158500 Sobic004G271700--Sobic001G158500 Sobic004G271700--Sobic001G103200 Sobic010G188100 Sobic010G188100 Sobic004G271700--Sobic010G188100 Sobic001G220400 Sobic001G220400 Sobic004G271700--Sobic001G220400 Sobic002G293300 Sobic002G293300 Sobic004G271700--Sobic002G293300 Sobic009G127000--Sobic001G074200 Sobic004G145200 Sobic004G145200 Sobic009G127000--Sobic004G145200 Sobic009G127000--Sobic010G228000 Sobic007G188100 Sobic007G188100 Sobic009G127000--Sobic007G188100 Sobic010G062800 Sobic010G062800 Sobic009G127000--Sobic010G062800 Sobic001G403700 Sobic001G403700 Sobic009G127000--Sobic001G403700 Sobic001G283500 Sobic001G283500 Sobic009G127000--Sobic001G283500 Sobic009G127000--Sobic007G125900 Sobic002G083266 Sobic002G083266 Sobic009G127000--Sobic002G083266 Sobic004G350300 Sobic004G350300 Sobic003G002400--Sobic004G350300 Sobic004G274400 Sobic004G274400 Sobic003G002400--Sobic004G274400 Sobic001G434900 Sobic001G434900 Sobic003G002400--Sobic001G434900 Sobic002G045300 Sobic002G045300 Sobic003G002400--Sobic002G045300 Sobic003G220600 Sobic003G220600 Sobic003G002400--Sobic003G220600 Sobic003G002400--Sobic004G271700 Sobic001G122500 Sobic001G122500 Sobic003G002400--Sobic001G122500 Sobic006G033200 Sobic006G033200 Sobic003G002400--Sobic006G033200 Sobic010G101500 Sobic010G101500 Sobic003G002400--Sobic010G101500 Sobic004G031600 Sobic004G031600 Sobic001G516100--Sobic004G031600 Sobic001G516100--Sobic001G103200 Sobic001G516100--Sobic003G367300 Sobic001G516100--Sobic004G271700 Sobic002G330300 Sobic002G330300 Sobic001G516100--Sobic002G330300 Sobic001G516100--Sobic002G293300 Sobic001G541100 Sobic001G541100 Sobic001G516100--Sobic001G541100 Sobic001G516100--Sobic003G002400 Sobic001G516100--Sobic004G274400 Sobic003G367300--Sobic002G293300 Sobic003G367300--Sobic001G516100 Sobic003G367300--Sobic001G434900 Sobic007G006600 Sobic007G006600 Sobic003G367300--Sobic007G006600 Sobic003G367300--Sobic004G271700 Sobic009G079300 Sobic009G079300 Sobic003G367300--Sobic009G079300 Sobic001G436000 Sobic001G436000 Sobic003G367300--Sobic001G436000 Sobic003G367300--Sobic003G002400 Sobic001G162100 Sobic001G162100 Sobic003G367300--Sobic001G162100 Sobic004G039300 Sobic004G039300 Sobic001G085900--Sobic004G039300 Sobic001G313500 Sobic001G313500 Sobic001G085900--Sobic001G313500 Sobic001G085900--Sobic001G158500 Sobic001G085900--Sobic002G083266 Sobic002G385900 Sobic002G385900 Sobic001G085900--Sobic002G385900 Sobic010G129600 Sobic010G129600 Sobic001G085900--Sobic010G129600 Sobic001G298300 Sobic001G298300 Sobic001G085900--Sobic001G298300 Sobic007G006700 Sobic007G006700 Sobic001G085900--Sobic007G006700 Sobic003G061900 Sobic003G061900 Sobic001G085900--Sobic003G061900 Sobic001G103200--Sobic001G516100 Sobic001G358300 Sobic001G358300 Sobic001G103200--Sobic001G358300 Sobic001G103200--Sobic004G271700 Sobic001G510700 Sobic001G510700 Sobic001G103200--Sobic001G510700 Sobic009G135100 Sobic009G135100 Sobic001G103200--Sobic009G135100 Sobic001G103200--Sobic009G219900 Sobic001G103200--Sobic004G350300 Sobic001G350900 Sobic001G350900 Sobic001G103200--Sobic001G350900 Sobic001G103200--Sobic003G002400 Sobic006G034000 Sobic006G034000 Sobic001G180900--Sobic006G034000 Sobic004G234900 Sobic004G234900 Sobic001G180900--Sobic004G234900 Sobic002G378800 Sobic002G378800 Sobic001G180900--Sobic002G378800 Sobic001G180900--Sobic009G079300 Sobic009G126900 Sobic009G126900 Sobic001G180900--Sobic009G126900 Sobic001G180900--Sobic004G274400 Sobic006G225600 Sobic006G225600 Sobic001G180900--Sobic006G225600 Sobic008G110600 Sobic008G110600 Sobic001G180900--Sobic008G110600 Sobic003G126300 Sobic003G126300 Sobic001G180900--Sobic003G126300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.