Gene annotation
Transcriptome id Sobic.005G035300.1
Synonym PSK3, Sb05g002960, ATPSK3, PSK1
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
phytosulfokines precursor, putative, expressed
UniProt C5Y4L7
Pfam PF06404
Panther DB PTHR33285:SF2 PTHR33285
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005576; extracellular region GO:0008083growth factor activity GO:0008283cell population proliferation


Orthologs (automatic annotation)
TAIR AT3G44735 : PHYTOSULFOKINE 3 PRECURSOR
RAP-DB (Rice) LOC_Os12g05260.1 : phytosulfokines precursor, putative, expressed
MaizeGDB (Corn) Zm00025a033468 , Zm00025a053858 , Zm00025a053857
Brachypodium KQJ92294 , KQJ92293
Barley HORVU5Hr1G041400.1
Wheat TraesCS5B02G130300 , TraesCS5D02G137900 , TraesCS5A02G130400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G181700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@auxin-induced protein 5NG4, putative, expressed -
2 Sobic.009G135100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipase, putative, expressed -
3 Sobic.008G115500 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
4 Sobic.001G074200 LRR receptor-like protein kinase, putative, expressed -
5 Sobic.009G127000 leucine-rich repeat family protein, putative, expressed -
6 Sobic.005G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CRP11 - Cysteine-rich family protein precursor, expressed -
7 Sobic.001G147200 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
8 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
9 Sobic.001G103200 DNA binding protein, putative, expressed -
10 Sobic.003G061900 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44
11 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
12 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
13 Sobic.007G125900 protein kinase domain containing protein, expressed -
14 Sobic.003G019200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
15 Sobic.007G148800 cupin superfamily protein, putative, expressed K09705: uncharacterized protein
16 Sobic.002G083266 - K00326: cytochrome-b5 reductase
17 Sobic.003G232900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -
18 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
19 Sobic.002G141300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -


Gene co-expression network
sample Sobic005G035300 Sobic005G035300 Sobic009G181700 Sobic009G181700 Sobic005G035300--Sobic009G181700 Sobic009G135100 Sobic009G135100 Sobic005G035300--Sobic009G135100 Sobic008G115500 Sobic008G115500 Sobic005G035300--Sobic008G115500 Sobic001G074200 Sobic001G074200 Sobic005G035300--Sobic001G074200 Sobic009G127000 Sobic009G127000 Sobic005G035300--Sobic009G127000 Sobic005G016800 Sobic005G016800 Sobic005G035300--Sobic005G016800 Sobic001G147200 Sobic001G147200 Sobic005G035300--Sobic001G147200 Sobic010G016400 Sobic010G016400 Sobic005G035300--Sobic010G016400 Sobic001G103200 Sobic001G103200 Sobic005G035300--Sobic001G103200 Sobic009G181700--Sobic005G035300 Sobic009G181700--Sobic009G135100 Sobic001G203200 Sobic001G203200 Sobic009G181700--Sobic001G203200 Sobic003G019200 Sobic003G019200 Sobic009G181700--Sobic003G019200 Sobic003G275300 Sobic003G275300 Sobic009G181700--Sobic003G275300 Sobic002G083266 Sobic002G083266 Sobic009G181700--Sobic002G083266 Sobic001G409900 Sobic001G409900 Sobic009G181700--Sobic001G409900 Sobic009G181700--Sobic010G016400 Sobic001G026900 Sobic001G026900 Sobic009G181700--Sobic001G026900 Sobic009G135100--Sobic001G103200 Sobic007G125900 Sobic007G125900 Sobic009G135100--Sobic007G125900 Sobic004G236550 Sobic004G236550 Sobic009G135100--Sobic004G236550 Sobic009G135100--Sobic005G035300 Sobic009G135100--Sobic010G016400 Sobic009G135100--Sobic001G074200 Sobic009G079300 Sobic009G079300 Sobic009G135100--Sobic009G079300 Sobic009G200300 Sobic009G200300 Sobic009G135100--Sobic009G200300 Sobic001G085900 Sobic001G085900 Sobic009G135100--Sobic001G085900 Sobic008G115500--Sobic001G074200 Sobic004G271700 Sobic004G271700 Sobic008G115500--Sobic004G271700 Sobic008G115500--Sobic009G127000 Sobic003G002400 Sobic003G002400 Sobic008G115500--Sobic003G002400 Sobic001G516100 Sobic001G516100 Sobic008G115500--Sobic001G516100 Sobic003G367300 Sobic003G367300 Sobic008G115500--Sobic003G367300 Sobic008G115500--Sobic001G085900 Sobic008G115500--Sobic001G103200 Sobic001G180900 Sobic001G180900 Sobic008G115500--Sobic001G180900 Sobic001G074200--Sobic009G127000 Sobic001G074200--Sobic007G125900 Sobic001G074200--Sobic008G115500 Sobic002G379866 Sobic002G379866 Sobic001G074200--Sobic002G379866 Sobic001G074200--Sobic001G147200 Sobic001G157200 Sobic001G157200 Sobic001G074200--Sobic001G157200 Sobic005G117400 Sobic005G117400 Sobic001G074200--Sobic005G117400 Sobic002G118600 Sobic002G118600 Sobic001G074200--Sobic002G118600 Sobic010G228000 Sobic010G228000 Sobic001G074200--Sobic010G228000 Sobic009G127000--Sobic001G074200 Sobic004G145200 Sobic004G145200 Sobic009G127000--Sobic004G145200 Sobic009G127000--Sobic010G228000 Sobic007G188100 Sobic007G188100 Sobic009G127000--Sobic007G188100 Sobic010G062800 Sobic010G062800 Sobic009G127000--Sobic010G062800 Sobic001G403700 Sobic001G403700 Sobic009G127000--Sobic001G403700 Sobic001G283500 Sobic001G283500 Sobic009G127000--Sobic001G283500 Sobic009G127000--Sobic007G125900 Sobic009G127000--Sobic002G083266 Sobic002G381300 Sobic002G381300 Sobic005G016800--Sobic002G381300 Sobic009G236200 Sobic009G236200 Sobic005G016800--Sobic009G236200 Sobic005G016800--Sobic007G125900 Sobic001G156300 Sobic001G156300 Sobic005G016800--Sobic001G156300 Sobic002G355200 Sobic002G355200 Sobic005G016800--Sobic002G355200 Sobic005G016800--Sobic004G236550 Sobic005G016800--Sobic009G079300 Sobic005G231900 Sobic005G231900 Sobic005G016800--Sobic005G231900 Sobic001G151800 Sobic001G151800 Sobic005G016800--Sobic001G151800 Sobic001G147200--Sobic003G019200 Sobic010G246000 Sobic010G246000 Sobic001G147200--Sobic010G246000 Sobic001G147200--Sobic002G118600 Sobic010G204300 Sobic010G204300 Sobic001G147200--Sobic010G204300 Sobic006G228300 Sobic006G228300 Sobic001G147200--Sobic006G228300 Sobic001G399100 Sobic001G399100 Sobic001G147200--Sobic001G399100 Sobic001G538866 Sobic001G538866 Sobic001G147200--Sobic001G538866 Sobic002G374100 Sobic002G374100 Sobic001G147200--Sobic002G374100 Sobic006G263100 Sobic006G263100 Sobic001G147200--Sobic006G263100 Sobic005G139400 Sobic005G139400 Sobic010G016400--Sobic005G139400 Sobic009G167700 Sobic009G167700 Sobic010G016400--Sobic009G167700 Sobic004G347300 Sobic004G347300 Sobic010G016400--Sobic004G347300 Sobic006G119200 Sobic006G119200 Sobic010G016400--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic010G016400--Sobic007G148800 Sobic006G217700 Sobic006G217700 Sobic010G016400--Sobic006G217700 Sobic001G010400 Sobic001G010400 Sobic010G016400--Sobic001G010400 Sobic004G102400 Sobic004G102400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic001G103200--Sobic001G516100 Sobic001G358300 Sobic001G358300 Sobic001G103200--Sobic001G358300 Sobic001G103200--Sobic004G271700 Sobic001G510700 Sobic001G510700 Sobic001G103200--Sobic001G510700 Sobic001G103200--Sobic009G135100 Sobic009G219900 Sobic009G219900 Sobic001G103200--Sobic009G219900 Sobic004G350300 Sobic004G350300 Sobic001G103200--Sobic004G350300 Sobic001G350900 Sobic001G350900 Sobic001G103200--Sobic001G350900 Sobic001G103200--Sobic003G002400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.