Gene annotation
Transcriptome id Sobic.006G162800.2,Sobic.006G162800.1
Synonym Sb06g023940, GATA5
Functional annotation expressed protein
UniProt A0A1B6PMB0 , C5YD07
Pfam PF00320
Panther DB PTHR10071 PTHR10071:SF163
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G60530 : GATA transcription factor 4
RAP-DB (Rice) LOC_Os04g45650.2 : expressed protein
MaizeGDB (Corn) Zm00025a010401 , Zm00025a056614
Brachypodium KQJ83828 , KQK00538
Barley HORVU6Hr1G061140.2 , HORVU2Hr1G092420.1 , HORVU2Hr1G092420.4 , HORVU6Hr1G061140.3 , HORVU6Hr1G061140.4
Wheat TraesCS2D02G386100 , TraesCS2A02G388300 , TraesCS3A02G274900 , TraesCS2B02G406400
Populus -


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cDNA sequences
Sobic.006G162800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G120900 photoperiodic flowering time gene(PubMedID : 22394582)@-(PubMedID : 23108465)@GRAS family transcription factor domain containing protein, expressed K14494: DELLA protein
2 Sobic.002G082100 serine/threonine-protein kinase, putative, expressed -
3 Sobic.006G190400 B3 DNA binding domain containing protein, expressed -
4 Sobic.004G192300 - -
5 Sobic.001G039800 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
6 Sobic.001G146301 - -
7 Sobic.006G223300 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
8 Sobic.003G306800 pentatricopeptide, putative, expressed -
9 Sobic.001G513600 C-methyltransferase, putative, expressed K08242: 24-methylenesterol C-methyltransferase
10 Sobic.004G027000 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
11 Sobic.001G448700 "TUD1(Ortholog in rice:Hu et al., 2013)"(PubMedID : 31659845)@U-box domain containing protein, expressed -
12 Sobic.002G145000 DNA-directed RNA polymerase subunit, putative, expressed K03011: RPB3, DNA-directed RNA polymerase II subunit RPB3
13 Sobic.008G038200 TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed -
14 Sobic.003G207300 OsFBD3 - F-box and FBD domain containing protein, expressed -
15 Sobic.006G188800 H-BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
16 Sobic.001G119900 - K12858: DDX23, ATP-dependent RNA helicase DDX23/PRP28
17 Sobic.004G118800 receptor lectin kinase like protein, putative, expressed -
18 Sobic.002G201400 ZF-HD protein dimerisation region containing protein, expressed -
19 Sobic.002G202000 double-stranded RNA binding motif containing protein, expressed -
20 Sobic.002G280600 hydroxyproline-rich glycoprotein family protein, putative, expressed -


Gene co-expression network
sample Sobic006G162800 Sobic006G162800 Sobic001G120900 Sobic001G120900 Sobic006G162800--Sobic001G120900 Sobic002G082100 Sobic002G082100 Sobic006G162800--Sobic002G082100 Sobic006G190400 Sobic006G190400 Sobic006G162800--Sobic006G190400 Sobic004G192300 Sobic004G192300 Sobic006G162800--Sobic004G192300 Sobic001G039800 Sobic001G039800 Sobic006G162800--Sobic001G039800 Sobic001G146301 Sobic001G146301 Sobic006G162800--Sobic001G146301 Sobic006G223300 Sobic006G223300 Sobic006G162800--Sobic006G223300 Sobic003G306800 Sobic003G306800 Sobic006G162800--Sobic003G306800 Sobic001G513600 Sobic001G513600 Sobic006G162800--Sobic001G513600 Sobic002G229900 Sobic002G229900 Sobic001G120900--Sobic002G229900 Sobic004G027000 Sobic004G027000 Sobic001G120900--Sobic004G027000 Sobic002G203500 Sobic002G203500 Sobic001G120900--Sobic002G203500 Sobic006G046600 Sobic006G046600 Sobic001G120900--Sobic006G046600 Sobic004G229100 Sobic004G229100 Sobic001G120900--Sobic004G229100 Sobic009G164900 Sobic009G164900 Sobic001G120900--Sobic009G164900 Sobic001G217100 Sobic001G217100 Sobic001G120900--Sobic001G217100 Sobic001G382400 Sobic001G382400 Sobic001G120900--Sobic001G382400 Sobic001G120900--Sobic006G162800 Sobic002G377800 Sobic002G377800 Sobic002G082100--Sobic002G377800 Sobic009G105200 Sobic009G105200 Sobic002G082100--Sobic009G105200 Sobic004G129600 Sobic004G129600 Sobic002G082100--Sobic004G129600 Sobic006G238400 Sobic006G238400 Sobic002G082100--Sobic006G238400 Sobic010G138900 Sobic010G138900 Sobic002G082100--Sobic010G138900 Sobic007G159200 Sobic007G159200 Sobic002G082100--Sobic007G159200 Sobic002G052700 Sobic002G052700 Sobic002G082100--Sobic002G052700 Sobic001G451300 Sobic001G451300 Sobic002G082100--Sobic001G451300 Sobic010G085200 Sobic010G085200 Sobic002G082100--Sobic010G085200 Sobic006G127400 Sobic006G127400 Sobic006G190400--Sobic006G127400 Sobic006G190400--Sobic006G162800 Sobic001G215500 Sobic001G215500 Sobic006G190400--Sobic001G215500 Sobic004G225300 Sobic004G225300 Sobic006G190400--Sobic004G225300 Sobic006G190400--Sobic001G120900 Sobic003G342900 Sobic003G342900 Sobic006G190400--Sobic003G342900 Sobic006G190400--Sobic001G513600 Sobic010G001800 Sobic010G001800 Sobic006G190400--Sobic010G001800 Sobic006G190400--Sobic004G027000 Sobic004G192300--Sobic002G082100 Sobic004G192300--Sobic006G162800 Sobic001G385500 Sobic001G385500 Sobic004G192300--Sobic001G385500 Sobic002G365400 Sobic002G365400 Sobic004G192300--Sobic002G365400 Sobic004G192300--Sobic002G377800 Sobic003G209300 Sobic003G209300 Sobic004G192300--Sobic003G209300 Sobic004G192300--Sobic001G513600 Sobic002G427300 Sobic002G427300 Sobic004G192300--Sobic002G427300 Sobic005G220101 Sobic005G220101 Sobic004G192300--Sobic005G220101 Sobic007G168200 Sobic007G168200 Sobic001G039800--Sobic007G168200 Sobic003G138600 Sobic003G138600 Sobic001G039800--Sobic003G138600 Sobic002G242200 Sobic002G242200 Sobic001G039800--Sobic002G242200 Sobic009G190800 Sobic009G190800 Sobic001G039800--Sobic009G190800 Sobic006G269000 Sobic006G269000 Sobic001G039800--Sobic006G269000 Sobic004G060600 Sobic004G060600 Sobic001G039800--Sobic004G060600 Sobic010G108900 Sobic010G108900 Sobic001G039800--Sobic010G108900 Sobic001G294200 Sobic001G294200 Sobic001G039800--Sobic001G294200 Sobic001G218800 Sobic001G218800 Sobic001G039800--Sobic001G218800 Sobic003G177000 Sobic003G177000 Sobic001G146301--Sobic003G177000 Sobic001G146301--Sobic007G159200 Sobic002G425200 Sobic002G425200 Sobic001G146301--Sobic002G425200 Sobic008G038200 Sobic008G038200 Sobic001G146301--Sobic008G038200 Sobic001G300000 Sobic001G300000 Sobic001G146301--Sobic001G300000 Sobic004G118800 Sobic004G118800 Sobic001G146301--Sobic004G118800 Sobic007G128100 Sobic007G128100 Sobic001G146301--Sobic007G128100 Sobic003G311500 Sobic003G311500 Sobic001G146301--Sobic003G311500 Sobic007G161600 Sobic007G161600 Sobic001G146301--Sobic007G161600 Sobic007G065300 Sobic007G065300 Sobic006G223300--Sobic007G065300 Sobic006G223300--Sobic008G038200 Sobic006G223300--Sobic002G425200 Sobic001G448700 Sobic001G448700 Sobic006G223300--Sobic001G448700 Sobic003G096300 Sobic003G096300 Sobic006G223300--Sobic003G096300 Sobic006G223300--Sobic003G177000 Sobic003G341700 Sobic003G341700 Sobic006G223300--Sobic003G341700 Sobic006G223300--Sobic002G082100 Sobic002G098500 Sobic002G098500 Sobic006G223300--Sobic002G098500 Sobic002G404200 Sobic002G404200 Sobic003G306800--Sobic002G404200 Sobic001G525900 Sobic001G525900 Sobic003G306800--Sobic001G525900 Sobic003G359900 Sobic003G359900 Sobic003G306800--Sobic003G359900 Sobic001G300100 Sobic001G300100 Sobic003G306800--Sobic001G300100 Sobic009G195000 Sobic009G195000 Sobic003G306800--Sobic009G195000 Sobic008G063200 Sobic008G063200 Sobic003G306800--Sobic008G063200 Sobic004G224500 Sobic004G224500 Sobic003G306800--Sobic004G224500 Sobic003G439100 Sobic003G439100 Sobic003G306800--Sobic003G439100 Sobic004G294700 Sobic004G294700 Sobic003G306800--Sobic004G294700 Sobic005G089000 Sobic005G089000 Sobic001G513600--Sobic005G089000 Sobic002G328100 Sobic002G328100 Sobic001G513600--Sobic002G328100 Sobic004G018400 Sobic004G018400 Sobic001G513600--Sobic004G018400 Sobic001G093600 Sobic001G093600 Sobic001G513600--Sobic001G093600 Sobic003G291400 Sobic003G291400 Sobic001G513600--Sobic003G291400 Sobic003G245900 Sobic003G245900 Sobic001G513600--Sobic003G245900 Sobic009G214800 Sobic009G214800 Sobic001G513600--Sobic009G214800 Sobic002G175900 Sobic002G175900 Sobic001G513600--Sobic002G175900 Sobic001G513600--Sobic001G215500
Octagon: transcription factors


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