Gene annotation
| Transcriptome id | Sobic.003G306800.1 |
|---|---|
| Synonym | Sb03g035530 |
| Functional annotation | pentatricopeptide, putative, expressed |
| UniProt | C5XKW8 |
| Pfam | PF13812 PF01535 PF13041 |
| Panther DB | PTHR24015 PTHR24015:SF20 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G30700 : Pentatricopeptide repeat (PPR) superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g55960.1 : pentatricopeptide, putative, expressed |
| MaizeGDB (Corn) | Zm00025a039946 |
| Brachypodium | PNT72915 |
| Barley | HORVU3Hr1G074250.11 , HORVU3Hr1G074250.10 , HORVU3Hr1G074250.18 , HORVU3Hr1G074250.24 , HORVU3Hr1G074250.22 , HORVU3Hr1G074250.23 , HORVU3Hr1G074250.20 , HORVU3Hr1G074250.21 , HORVU3Hr1G074250.8 , HORVU3Hr1G074250.7 , HORVU3Hr1G074250.4 , HORVU3Hr1G074250.3 , HORVU3Hr1G074250.2 |
| Wheat | TraesCS3B02G335500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G404200 | F-box domain containing protein, expressed | - |
| 2 | Sobic.001G525900 | homeobox domain containing protein, expressed | - |
| 3 | Sobic.003G359900 | C2 domain containing protein, expressed | - |
| 4 | Sobic.001G300100 | - | - |
| 5 | Sobic.009G195000 | CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@down-regulated TF in developmental senescence(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
| 6 | Sobic.008G063200 | expressed protein | - |
| 7 | Sobic.004G224500 | OsClp3 - Putative Clp protease homologue, expressed | K01358: clpP, ATP-dependent Clp protease, protease subunit |
| 8 | Sobic.003G439100 | mitochondrial carrier protein, putative, expressed | - |
| 9 | Sobic.004G294700 | F-box family protein, putative, expressed | K10268: F-box and leucine-rich repeat protein 2/20 |
| 10 | Sobic.007G110700 | serine/threonine-protein kinase PRP4, putative, expressed | K08827: serine/threonine-protein kinase PRP4 |
| 11 | Sobic.003G179400 | NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed | K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase |
| 12 | Sobic.002G020400 | PDV2, putative, expressed | - |
| 13 | Sobic.006G065900 | expressed protein | - |
| 14 | Sobic.004G254000 | Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed | - |
| 15 | Sobic.010G080300 | peptidase, putative, expressed | K01436: amidohydrolase |
| 16 | Sobic.007G189200 | "Candidate orthologue to the wheat Pm40 gene, Disease resistance RGA1"(PubMedID : 27755575)@CC-NBS-LRR, putative, expressed | - |
| 17 | Sobic.006G164300 | YELLOW STRIPE like 2(PubMedID : 26465154)@- | - |
| 18 | Sobic.002G115100 | - | - |
| 19 | Sobic.001G261900 | caffeine-induced death protein 1, putative, expressed | - |
| 20 | Sobic.002G142066 | - | K18045: SIW14, tyrosine-protein phosphatase SIW14 |
Gene co-expression network
Octagon: transcription factors
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