Gene annotation
Transcriptome id Sobic.004G254000.1
Synonym SbDof18, DNA binding with One Finger, OBP4, Sb04g029300
Functional annotation Homologous to Dof genes in Arabidopsis and rice. (PubMedID : 21161392)
dof zinc finger domain containing protein, putative, expressed
UniProt H6UF78 , A0A194YSN9 , C5XZQ2
Pfam PF02701
Panther DB PTHR31992
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G60850 : OBF binding protein 4
RAP-DB (Rice) LOC_Os02g49440.1 : dof zinc finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a049197 , Zm00025a004485 , Zm00025a016425 , Zm00025a009285 , Zm00025a023031 , Zm00025a017356 , Zm00025a007115 , Zm00025a032602 , Zm00025a007401 , Zm00025a047370 , Zm00025a052752 , Zm00025a006464 , Zm00025a039572 , Zm00025a016727 , Zm00025a002866 , Zm00025a014147 , Zm00025a021740 , Zm00025a017302 , Zm00025a001854 , Zm00025a000851 , Zm00025a021884 , Zm00025a032473 , Zm00025a057389 , Zm00025a014756 , Zm00025a008288 , Zm00025a004967 , Zm00025a048181 , Zm00025a026723 , Zm00025a043793
Brachypodium KQK22335 , KQK14158 , PNT73247 , PNT69224 , KQK00955 , KQK16070 , PNT65625 , KQJ98766 , PNT69485 , KQJ90639 , KQK03138 , KQK06036 , KQK14319 , KQK23432 , KQK00737 , KQJ84092 , KQK00738
Barley HORVU2Hr1G013060.1 , HORVU2Hr1G119160.6 , HORVU2Hr1G119160.4 , HORVU2Hr1G119160.2 , HORVU2Hr1G119160.3 , HORVU2Hr1G119160.1 , HORVU5Hr1G113190.2 , HORVU5Hr1G113190.1 , HORVU1Hr1G044560.1 , HORVU4Hr1G074990.3 , HORVU4Hr1G074990.2 , HORVU4Hr1G074990.1 , HORVU1Hr1G074140.1 , HORVU3Hr1G083460.1 , HORVU4Hr1G013890.1 , HORVU6Hr1G065250.4 , HORVU6Hr1G065250.5 , HORVU6Hr1G065250.6 , HORVU6Hr1G065250.7 , HORVU5Hr1G048700.1 , HORVU6Hr1G065250.2 , HORVU6Hr1G065250.3 , HORVU6Hr1G065250.8 , HORVU6Hr1G065250.9 , HORVU2Hr1G119110.3 , HORVU2Hr1G119110.7 , HORVU2Hr1G119110.6 , HORVU2Hr1G119110.5 , HORVU2Hr1G119110.4 , HORVU2Hr1G119110.9 , HORVU2Hr1G119110.8 , HORVU6Hr1G065250.1 , HORVU5Hr1G097620.1 , HORVU7Hr1G043250.2 , HORVU5Hr1G113220.1 , HORVU5Hr1G113220.2 , HORVU5Hr1G113220.3 , HORVU5Hr1G113220.4 , HORVU5Hr1G113220.5 , HORVU5Hr1G113220.6 , HORVU6Hr1G065250.10
Wheat TraesCS5B02G154100 , TraesCS2A02G402200 , TraesCS4B02G206800 , TraesCS2D02G563000 , TraesCS4A02G097800 , TraesCS5A02G155900 , TraesCS4B02G286400 , TraesCS2D02G563400 , TraesCS6D02G236700 , TraesCS2D02G563200 , TraesCS6B02G301500 , TraesCS4D02G285100 , TraesCS2B02G592600 , TraesCS4D02G207600 , TraesCS2D02G399500 , TraesCS2B02G592900 , TraesCS2A02G590800 , TraesCS2B02G592800 , TraesCS5D02G493000 , TraesCS4A02G017700 , TraesCS6A02G274000 , TraesCS2B02G592700 , TraesCS2A02G591200 , TraesCS5D02G161000 , TraesCS5B02G492600 , TraesCS6D02G254200 , TraesCS6B02G270100 , TraesCS2B02G420400 , TraesCS6A02G255500 , TraesCS5A02G479400
Populus PNT43441


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cDNA sequences
Sobic.004G254000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G525900 homeobox domain containing protein, expressed -
2 Sobic.006G131800 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
3 Sobic.003G291400 dehydrogenase, putative, expressed -
4 Sobic.003G135800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@- -
5 Sobic.002G281000 aquaporin protein, putative, expressed K09872: aquaporin PIP
6 Sobic.010G089200 expressed protein -
7 Sobic.001G321600 dehydration response related protein, putative, expressed -
8 Sobic.001G019300 WD40-like Beta Propeller Repeat family protein, expressed -
9 Sobic.004G224500 OsClp3 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
10 Sobic.008G072700 expressed protein -
11 Sobic.001G520100 MLO domain containing protein, putative, expressed K08472: mlo protein
12 Sobic.004G063200 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
13 Sobic.003G359900 C2 domain containing protein, expressed -
14 Sobic.001G414000 TKL_IRAK_CrRLK1L-1.7 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
15 Sobic.003G375900 amino acid transporter, putative, expressed -
16 Sobic.005G021600 expressed protein -
17 Sobic.001G005500 plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed -
18 Sobic.005G089000 gibberellin receptor GID1L2, putative, expressed -
19 Sobic.003G284300 expressed protein -
20 Sobic.006G164300 YELLOW STRIPE like 2(PubMedID : 26465154)@- -


Gene co-expression network
sample Sobic004G254000 Sobic004G254000 Sobic001G525900 Sobic001G525900 Sobic004G254000--Sobic001G525900 Sobic006G131800 Sobic006G131800 Sobic004G254000--Sobic006G131800 Sobic003G291400 Sobic003G291400 Sobic004G254000--Sobic003G291400 Sobic003G135800 Sobic003G135800 Sobic004G254000--Sobic003G135800 Sobic002G281000 Sobic002G281000 Sobic004G254000--Sobic002G281000 Sobic010G089200 Sobic010G089200 Sobic004G254000--Sobic010G089200 Sobic001G321600 Sobic001G321600 Sobic004G254000--Sobic001G321600 Sobic001G019300 Sobic001G019300 Sobic004G254000--Sobic001G019300 Sobic004G224500 Sobic004G224500 Sobic004G254000--Sobic004G224500 Sobic001G525900--Sobic002G281000 Sobic001G404500 Sobic001G404500 Sobic001G525900--Sobic001G404500 Sobic001G525900--Sobic001G019300 Sobic005G021600 Sobic005G021600 Sobic001G525900--Sobic005G021600 Sobic006G164300 Sobic006G164300 Sobic001G525900--Sobic006G164300 Sobic001G048000 Sobic001G048000 Sobic001G525900--Sobic001G048000 Sobic008G063100 Sobic008G063100 Sobic001G525900--Sobic008G063100 Sobic004G063200 Sobic004G063200 Sobic001G525900--Sobic004G063200 Sobic001G525900--Sobic001G321600 Sobic006G131800--Sobic002G281000 Sobic006G131800--Sobic001G404500 Sobic006G131800--Sobic003G291400 Sobic001G314900 Sobic001G314900 Sobic006G131800--Sobic001G314900 Sobic006G131800--Sobic008G063100 Sobic006G131800--Sobic010G089200 Sobic006G131800--Sobic001G525900 Sobic006G131800--Sobic004G224500 Sobic006G131800--Sobic004G254000 Sobic003G291400--Sobic010G089200 Sobic003G291400--Sobic001G321600 Sobic005G089000 Sobic005G089000 Sobic003G291400--Sobic005G089000 Sobic003G291400--Sobic002G281000 Sobic003G291400--Sobic006G131800 Sobic002G195700 Sobic002G195700 Sobic003G291400--Sobic002G195700 Sobic002G281800 Sobic002G281800 Sobic003G291400--Sobic002G281800 Sobic001G005500 Sobic001G005500 Sobic003G291400--Sobic001G005500 Sobic003G291400--Sobic005G021600 Sobic005G190900 Sobic005G190900 Sobic003G135800--Sobic005G190900 Sobic004G078600 Sobic004G078600 Sobic003G135800--Sobic004G078600 Sobic002G371900 Sobic002G371900 Sobic003G135800--Sobic002G371900 Sobic003G135800--Sobic001G019300 Sobic003G135800--Sobic002G281000 Sobic003G135800--Sobic005G089000 Sobic003G096500 Sobic003G096500 Sobic003G135800--Sobic003G096500 Sobic002G265400 Sobic002G265400 Sobic003G135800--Sobic002G265400 Sobic003G135800--Sobic004G063200 Sobic002G281000--Sobic001G525900 Sobic002G281000--Sobic001G019300 Sobic002G281000--Sobic008G063100 Sobic009G202400 Sobic009G202400 Sobic002G281000--Sobic009G202400 Sobic002G281000--Sobic002G195700 Sobic005G097800 Sobic005G097800 Sobic002G281000--Sobic005G097800 Sobic002G281000--Sobic004G063200 Sobic002G281000--Sobic001G404500 Sobic002G281000--Sobic005G021600 Sobic010G089200--Sobic001G321600 Sobic001G520100 Sobic001G520100 Sobic010G089200--Sobic001G520100 Sobic010G089200--Sobic002G195700 Sobic010G089200--Sobic001G005500 Sobic010G089200--Sobic001G019300 Sobic010G089200--Sobic008G063100 Sobic010G089200--Sobic005G021600 Sobic010G089200--Sobic002G281000 Sobic002G257100 Sobic002G257100 Sobic010G089200--Sobic002G257100 Sobic001G321600--Sobic001G005500 Sobic001G321600--Sobic001G019300 Sobic001G321600--Sobic002G195700 Sobic001G321600--Sobic010G089200 Sobic008G073400 Sobic008G073400 Sobic001G321600--Sobic008G073400 Sobic001G321600--Sobic001G520100 Sobic001G321600--Sobic002G281000 Sobic003G237000 Sobic003G237000 Sobic001G321600--Sobic003G237000 Sobic002G366100 Sobic002G366100 Sobic001G321600--Sobic002G366100 Sobic001G019300--Sobic002G265400 Sobic001G019300--Sobic002G281000 Sobic005G063900 Sobic005G063900 Sobic001G019300--Sobic005G063900 Sobic001G019300--Sobic001G321600 Sobic001G019300--Sobic001G005500 Sobic001G019300--Sobic008G073400 Sobic001G019300--Sobic002G195700 Sobic001G019300--Sobic005G190900 Sobic001G198700 Sobic001G198700 Sobic001G019300--Sobic001G198700 Sobic006G110900 Sobic006G110900 Sobic004G224500--Sobic006G110900 Sobic002G046900 Sobic002G046900 Sobic004G224500--Sobic002G046900 Sobic004G224500--Sobic005G021600 Sobic006G214700 Sobic006G214700 Sobic004G224500--Sobic006G214700 Sobic004G224500--Sobic001G525900 Sobic008G063200 Sobic008G063200 Sobic004G224500--Sobic008G063200 Sobic003G179400 Sobic003G179400 Sobic004G224500--Sobic003G179400 Sobic001G006000 Sobic001G006000 Sobic004G224500--Sobic001G006000 Sobic004G224500--Sobic001G314900
Octagon: transcription factors


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