Gene annotation
Transcriptome id Sobic.009G195000.2,Sobic.009G195000.4,Sobic.009G195000.3,Sobic.009G195000.1
Synonym Sb09g025340, TCP-like gene;TCP-like gene;SbTCP19;SbTCP19, TCP5
Functional annotation CIN-like (ClassII) Subclade 9 TCP (PubMedID : 21444336)
down-regulated TF in developmental senescence (PubMedID : 27586543)
"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)." (PubMedID : 27917941)
"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)" (PubMedID : 28383054)
TCP family transcription factor, putative, expressed
UniProt A0A1Z5R3E9 , C5Z0W3
Pfam PF03634
Panther DB PTHR31072 PTHR31072:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G60970 : TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
RAP-DB (Rice) LOC_Os05g43760.1 : TCP family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a021020 , Zm00025a044209 , Zm00025a032088 , Zm00025a027454
Brachypodium KQJ83685 , KQK12863
Barley HORVU1Hr1G077080.3 , HORVU1Hr1G077080.1 , HORVU1Hr1G077080.2 , HORVU3Hr1G073830.1 , HORVU3Hr1G073830.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G281900 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed K01770: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2 Sobic.010G140600 bolA, putative, expressed -
3 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -
4 Sobic.009G068300 chloroplast lumen common family protein, putative, expressed -
5 Sobic.003G007700 ethylene-responsive protein related, putative, expressed -
6 Sobic.006G258700 Alternative oxidase family protein(PubMedID : 26465154)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
7 Sobic.001G286600 PAP fibrillin family domain containing protein, expressed -
8 Sobic.008G063200 expressed protein -
9 Sobic.002G000600 glycosyl transferase, group 1 domain containing protein, expressed K06119: sulfoquinovosyltransferase
10 Sobic.002G168300 RGH2B, putative, expressed -
11 Sobic.003G162100 membrane associated DUF588 domain containing protein, putative, expressed -
12 Sobic.005G111500 FHA domain containing protein, putative, expressed -
13 Sobic.002G020400 PDV2, putative, expressed -
14 Sobic.002G136100 genetic modifier, putative, expressed -
15 Sobic.003G328100 expressed protein -
16 Sobic.004G154400 drought-induced protein 1, putative, expressed -
17 Sobic.001G517700 catalase domain containing protein, expressed K03781: katE, CAT, catB, catalase
18 Sobic.003G037300 Twin LOV 1, putative, expressed -
19 Sobic.002G102200 acetyltransferase, GNAT family, putative, expressed -
20 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase


Gene co-expression network
sample Sobic009G195000 Sobic009G195000 Sobic004G281900 Sobic004G281900 Sobic009G195000--Sobic004G281900 Sobic010G140600 Sobic010G140600 Sobic009G195000--Sobic010G140600 Sobic010G269400 Sobic010G269400 Sobic009G195000--Sobic010G269400 Sobic009G068300 Sobic009G068300 Sobic009G195000--Sobic009G068300 Sobic003G007700 Sobic003G007700 Sobic009G195000--Sobic003G007700 Sobic006G258700 Sobic006G258700 Sobic009G195000--Sobic006G258700 Sobic001G286600 Sobic001G286600 Sobic009G195000--Sobic001G286600 Sobic008G063200 Sobic008G063200 Sobic009G195000--Sobic008G063200 Sobic002G000600 Sobic002G000600 Sobic009G195000--Sobic002G000600 Sobic007G087100 Sobic007G087100 Sobic004G281900--Sobic007G087100 Sobic003G328100 Sobic003G328100 Sobic004G281900--Sobic003G328100 Sobic003G070900 Sobic003G070900 Sobic004G281900--Sobic003G070900 Sobic006G102000 Sobic006G102000 Sobic004G281900--Sobic006G102000 Sobic006G197300 Sobic006G197300 Sobic004G281900--Sobic006G197300 Sobic001G005200 Sobic001G005200 Sobic004G281900--Sobic001G005200 Sobic006G232600 Sobic006G232600 Sobic004G281900--Sobic006G232600 Sobic001G436400 Sobic001G436400 Sobic004G281900--Sobic001G436400 Sobic002G072400 Sobic002G072400 Sobic004G281900--Sobic002G072400 Sobic010G140600--Sobic010G269400 Sobic010G058200 Sobic010G058200 Sobic010G140600--Sobic010G058200 Sobic010G140600--Sobic001G286600 Sobic010G140600--Sobic004G281900 Sobic004G238200 Sobic004G238200 Sobic010G140600--Sobic004G238200 Sobic002G102200 Sobic002G102200 Sobic010G140600--Sobic002G102200 Sobic001G072700 Sobic001G072700 Sobic010G140600--Sobic001G072700 Sobic006G155500 Sobic006G155500 Sobic010G140600--Sobic006G155500 Sobic008G144800 Sobic008G144800 Sobic010G140600--Sobic008G144800 Sobic010G269400--Sobic001G286600 Sobic010G269400--Sobic006G258700 Sobic010G269400--Sobic010G140600 Sobic010G269400--Sobic010G058200 Sobic003G037300 Sobic003G037300 Sobic010G269400--Sobic003G037300 Sobic003G014300 Sobic003G014300 Sobic010G269400--Sobic003G014300 Sobic010G269400--Sobic002G102200 Sobic006G110900 Sobic006G110900 Sobic010G269400--Sobic006G110900 Sobic009G062400 Sobic009G062400 Sobic010G269400--Sobic009G062400 Sobic005G002900 Sobic005G002900 Sobic009G068300--Sobic005G002900 Sobic009G068300--Sobic008G063200 Sobic003G085000 Sobic003G085000 Sobic009G068300--Sobic003G085000 Sobic010G255100 Sobic010G255100 Sobic009G068300--Sobic010G255100 Sobic001G291900 Sobic001G291900 Sobic009G068300--Sobic001G291900 Sobic004G333400 Sobic004G333400 Sobic009G068300--Sobic004G333400 Sobic009G068300--Sobic002G102200 Sobic006G210400 Sobic006G210400 Sobic009G068300--Sobic006G210400 Sobic004G336000 Sobic004G336000 Sobic009G068300--Sobic004G336000 Sobic003G007700--Sobic006G258700 Sobic003G007700--Sobic010G269400 Sobic005G012200 Sobic005G012200 Sobic003G007700--Sobic005G012200 Sobic002G200700 Sobic002G200700 Sobic003G007700--Sobic002G200700 Sobic001G351400 Sobic001G351400 Sobic003G007700--Sobic001G351400 Sobic002G136100 Sobic002G136100 Sobic003G007700--Sobic002G136100 Sobic009G034600 Sobic009G034600 Sobic003G007700--Sobic009G034600 Sobic003G007700--Sobic003G014300 Sobic003G007700--Sobic010G058200 Sobic006G258700--Sobic003G014300 Sobic006G258700--Sobic010G269400 Sobic004G298900 Sobic004G298900 Sobic006G258700--Sobic004G298900 Sobic006G258700--Sobic001G351400 Sobic006G258700--Sobic003G037300 Sobic010G189200 Sobic010G189200 Sobic006G258700--Sobic010G189200 Sobic004G300000 Sobic004G300000 Sobic006G258700--Sobic004G300000 Sobic006G258700--Sobic001G286600 Sobic001G404500 Sobic001G404500 Sobic006G258700--Sobic001G404500 Sobic004G154400 Sobic004G154400 Sobic001G286600--Sobic004G154400 Sobic001G286600--Sobic009G062400 Sobic001G286600--Sobic010G269400 Sobic001G286600--Sobic010G058200 Sobic001G118400 Sobic001G118400 Sobic001G286600--Sobic001G118400 Sobic001G286600--Sobic003G328100 Sobic001G286600--Sobic006G155500 Sobic001G286600--Sobic006G110900 Sobic001G286600--Sobic003G070900 Sobic001G450600 Sobic001G450600 Sobic008G063200--Sobic001G450600 Sobic008G063200--Sobic006G110900 Sobic006G214700 Sobic006G214700 Sobic008G063200--Sobic006G214700 Sobic001G006000 Sobic001G006000 Sobic008G063200--Sobic001G006000 Sobic008G063200--Sobic002G102200 Sobic003G253300 Sobic003G253300 Sobic008G063200--Sobic003G253300 Sobic010G076800 Sobic010G076800 Sobic008G063200--Sobic010G076800 Sobic008G063200--Sobic004G333400 Sobic003G342200 Sobic003G342200 Sobic008G063200--Sobic003G342200 Sobic003G232700 Sobic003G232700 Sobic002G000600--Sobic003G232700 Sobic004G178100 Sobic004G178100 Sobic002G000600--Sobic004G178100 Sobic003G141100 Sobic003G141100 Sobic002G000600--Sobic003G141100 Sobic008G062400 Sobic008G062400 Sobic002G000600--Sobic008G062400 Sobic002G000600--Sobic006G197300 Sobic007G023200 Sobic007G023200 Sobic002G000600--Sobic007G023200 Sobic001G516901 Sobic001G516901 Sobic002G000600--Sobic001G516901 Sobic004G328400 Sobic004G328400 Sobic002G000600--Sobic004G328400 Sobic001G500600 Sobic001G500600 Sobic002G000600--Sobic001G500600
Octagon: transcription factors


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