Gene annotation
Transcriptome id Sobic.003G162100.1
Synonym Sb03g014480
Functional annotation membrane associated DUF588 domain containing protein, putative, expressed
UniProt C5XKI6
Pfam PF04535
Panther DB PTHR11615 PTHR11615:SF150
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G15630 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os01g26120.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK04287
Barley HORVU7Hr1G091440.4 , HORVU7Hr1G091440.3 , HORVU7Hr1G091440.2 , HORVU7Hr1G091440.1
Wheat TraesCS7A02G384700 , TraesCS7B02G287500 , TraesCS7D02G381200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G002600 -(PubMedID : 23001790)@GLK2(PubMedID : 24676859)@GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition(PubMedID : 22968911)@myb-like DNA-binding domain containing protein, expressed -
2 Sobic.005G012200 STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
3 Sobic.003G343400 sufB/sufD domain containing protein, putative, expressed -
4 Sobic.006G213500 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
5 Sobic.004G131900 - -
6 Sobic.001G351400 Metacaspase 1("PubMedID : 26759170,PubMedID : 24597475")@ICE-like protease p20 domain containing protein, putative, expressed -
7 Sobic.006G258700 Alternative oxidase family protein(PubMedID : 26465154)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
8 Sobic.009G195000 CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@down-regulated TF in developmental senescence(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
9 Sobic.007G189200 "Candidate orthologue to the wheat Pm40 gene, Disease resistance RGA1"(PubMedID : 27755575)@CC-NBS-LRR, putative, expressed -
10 Sobic.001G451700 cytochrome P450 protein, putative, expressed -
11 Sobic.002G373100 strictosidine synthase, putative, expressed -
12 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -
13 Sobic.009G140000 MLO domain containing protein, putative, expressed K08472: mlo protein
14 Sobic.003G343500 NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed K17871: NADH:ubiquinone reductase (non-electrogenic)
15 Sobic.005G144300 phospholipase, patatin family, putative, expressed -
16 Sobic.005G175500 TKL_IRAK_DUF26-lc.25 - DUF26 kinases have homology to DUF26 containing loci, expressed -
17 Sobic.002G200700 expressed protein -
18 Sobic.003G007700 ethylene-responsive protein related, putative, expressed -
19 Sobic.002G246500 OTU-like cysteine protease family protein, putative, expressed -
20 Sobic.003G014300 expressed protein -


Gene co-expression network
sample Sobic003G162100 Sobic003G162100 Sobic003G002600 Sobic003G002600 Sobic003G162100--Sobic003G002600 Sobic005G012200 Sobic005G012200 Sobic003G162100--Sobic005G012200 Sobic003G343400 Sobic003G343400 Sobic003G162100--Sobic003G343400 Sobic006G213500 Sobic006G213500 Sobic003G162100--Sobic006G213500 Sobic004G131900 Sobic004G131900 Sobic003G162100--Sobic004G131900 Sobic001G351400 Sobic001G351400 Sobic003G162100--Sobic001G351400 Sobic006G258700 Sobic006G258700 Sobic003G162100--Sobic006G258700 Sobic009G195000 Sobic009G195000 Sobic003G162100--Sobic009G195000 Sobic007G189200 Sobic007G189200 Sobic003G162100--Sobic007G189200 Sobic003G002600--Sobic003G162100 Sobic003G403500 Sobic003G403500 Sobic003G002600--Sobic003G403500 Sobic001G236400 Sobic001G236400 Sobic003G002600--Sobic001G236400 Sobic003G002600--Sobic004G131900 Sobic003G002600--Sobic005G012200 Sobic006G065900 Sobic006G065900 Sobic003G002600--Sobic006G065900 Sobic002G201900 Sobic002G201900 Sobic003G002600--Sobic002G201900 Sobic004G251300 Sobic004G251300 Sobic003G002600--Sobic004G251300 Sobic001G414000 Sobic001G414000 Sobic003G002600--Sobic001G414000 Sobic003G007700 Sobic003G007700 Sobic005G012200--Sobic003G007700 Sobic003G263001 Sobic003G263001 Sobic005G012200--Sobic003G263001 Sobic005G012200--Sobic003G162100 Sobic001G500800 Sobic001G500800 Sobic005G012200--Sobic001G500800 Sobic001G381200 Sobic001G381200 Sobic005G012200--Sobic001G381200 Sobic005G012200--Sobic003G002600 Sobic002G200700 Sobic002G200700 Sobic005G012200--Sobic002G200700 Sobic005G012200--Sobic001G351400 Sobic005G188600 Sobic005G188600 Sobic005G012200--Sobic005G188600 Sobic001G327800 Sobic001G327800 Sobic003G343400--Sobic001G327800 Sobic002G246500 Sobic002G246500 Sobic003G343400--Sobic002G246500 Sobic002G231200 Sobic002G231200 Sobic003G343400--Sobic002G231200 Sobic006G210400 Sobic006G210400 Sobic003G343400--Sobic006G210400 Sobic004G054400 Sobic004G054400 Sobic003G343400--Sobic004G054400 Sobic001G512500 Sobic001G512500 Sobic003G343400--Sobic001G512500 Sobic001G032700 Sobic001G032700 Sobic003G343400--Sobic001G032700 Sobic010G140600 Sobic010G140600 Sobic003G343400--Sobic010G140600 Sobic001G065600 Sobic001G065600 Sobic003G343400--Sobic001G065600 Sobic010G196500 Sobic010G196500 Sobic006G213500--Sobic010G196500 Sobic006G213500--Sobic001G500800 Sobic002G193100 Sobic002G193100 Sobic006G213500--Sobic002G193100 Sobic007G169300 Sobic007G169300 Sobic006G213500--Sobic007G169300 Sobic006G213500--Sobic001G381200 Sobic003G343500 Sobic003G343500 Sobic006G213500--Sobic003G343500 Sobic002G116800 Sobic002G116800 Sobic006G213500--Sobic002G116800 Sobic007G084300 Sobic007G084300 Sobic006G213500--Sobic007G084300 Sobic001G488700 Sobic001G488700 Sobic006G213500--Sobic001G488700 Sobic001G298700 Sobic001G298700 Sobic004G131900--Sobic001G298700 Sobic004G131900--Sobic003G002600 Sobic010G262500 Sobic010G262500 Sobic004G131900--Sobic010G262500 Sobic006G175800 Sobic006G175800 Sobic004G131900--Sobic006G175800 Sobic004G131900--Sobic003G403500 Sobic004G131900--Sobic001G500800 Sobic004G131900--Sobic010G196500 Sobic004G131900--Sobic001G488700 Sobic007G105400 Sobic007G105400 Sobic004G131900--Sobic007G105400 Sobic001G351400--Sobic006G258700 Sobic009G189000 Sobic009G189000 Sobic001G351400--Sobic009G189000 Sobic001G102300 Sobic001G102300 Sobic001G351400--Sobic001G102300 Sobic002G362100 Sobic002G362100 Sobic001G351400--Sobic002G362100 Sobic010G207500 Sobic010G207500 Sobic001G351400--Sobic010G207500 Sobic001G404500 Sobic001G404500 Sobic001G351400--Sobic001G404500 Sobic010G184600 Sobic010G184600 Sobic001G351400--Sobic010G184600 Sobic003G410900 Sobic003G410900 Sobic001G351400--Sobic003G410900 Sobic001G525900 Sobic001G525900 Sobic001G351400--Sobic001G525900 Sobic003G014300 Sobic003G014300 Sobic006G258700--Sobic003G014300 Sobic010G269400 Sobic010G269400 Sobic006G258700--Sobic010G269400 Sobic004G298900 Sobic004G298900 Sobic006G258700--Sobic004G298900 Sobic006G258700--Sobic001G351400 Sobic003G037300 Sobic003G037300 Sobic006G258700--Sobic003G037300 Sobic010G189200 Sobic010G189200 Sobic006G258700--Sobic010G189200 Sobic004G300000 Sobic004G300000 Sobic006G258700--Sobic004G300000 Sobic001G286600 Sobic001G286600 Sobic006G258700--Sobic001G286600 Sobic006G258700--Sobic001G404500 Sobic004G281900 Sobic004G281900 Sobic009G195000--Sobic004G281900 Sobic009G195000--Sobic010G140600 Sobic009G195000--Sobic010G269400 Sobic009G068300 Sobic009G068300 Sobic009G195000--Sobic009G068300 Sobic009G195000--Sobic003G007700 Sobic009G195000--Sobic006G258700 Sobic009G195000--Sobic001G286600 Sobic008G063200 Sobic008G063200 Sobic009G195000--Sobic008G063200 Sobic002G000600 Sobic002G000600 Sobic009G195000--Sobic002G000600 Sobic007G189200--Sobic002G246500 Sobic004G183800 Sobic004G183800 Sobic007G189200--Sobic004G183800 Sobic007G189200--Sobic010G189200 Sobic007G189200--Sobic003G410900 Sobic009G034600 Sobic009G034600 Sobic007G189200--Sobic009G034600 Sobic007G189200--Sobic003G162100 Sobic007G189200--Sobic001G351400 Sobic004G189900 Sobic004G189900 Sobic007G189200--Sobic004G189900 Sobic007G189200--Sobic010G269400
Octagon: transcription factors


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