Gene annotation
Transcriptome id Sobic.006G223300.1
Synonym Sb06g029270, HDG2
Functional annotation homeobox and START domains containing protein, putative, expressed
UniProt C6JRI1 , C5YG87
Pfam PF00046 PF01852
Panther DB PTHR24326 PTHR24326:SF239
NCBI CDD KOG0483; Transcription factor HEX, contains HOX and HALZ domains
KEGG Orthology K09338; homeobox-leucine zipper protein
Gene Ontology GO:0003677; DNA binding GO:0008289lipid binding


Orthologs (automatic annotation)
TAIR AT4G04890 : protodermal factor 2
RAP-DB (Rice) LOC_Os04g53540.1 : homeobox and START domains containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a029982 , Zm00025a054779 , Zm00025a057079 , Zm00025a009692 , Zm00025a055280
Brachypodium PNT66595 , KQJ84752 , KQJ84753 , KQJ84751 , PNT69551 , KQJ95130 , KQJ94986 , KQJ95129 , KQJ95128 , PNT61898 , KQK01691
Barley HORVU7Hr1G073440.4 , HORVU7Hr1G073450.1 , HORVU7Hr1G073450.2 , HORVU7Hr1G073450.3 , HORVU7Hr1G073450.4 , HORVU7Hr1G073450.5 , HORVU2Hr1G106970.4 , HORVU2Hr1G106970.5 , HORVU2Hr1G106970.7 , HORVU2Hr1G106970.6 , HORVU2Hr1G106970.1 , HORVU2Hr1G106970.3 , HORVU2Hr1G106970.2 , HORVU7Hr1G073440.5 , HORVU7Hr1G073440.3 , HORVU7Hr1G073440.2 , HORVU7Hr1G073440.1
Wheat TraesCS2A02G474000 , TraesCS2B02G497500 , TraesCS7A02G308400 , TraesCS2D02G473700 , TraesCS7D02G305200 , TraesCS7D02G305200 , TraesCS7B02G208600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G223300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G065300 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
2 Sobic.008G038200 TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed -
3 Sobic.002G425200 expressed protein -
4 Sobic.001G448700 "TUD1(Ortholog in rice:Hu et al., 2013)"(PubMedID : 31659845)@U-box domain containing protein, expressed -
5 Sobic.003G096300 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
6 Sobic.003G177000 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
7 Sobic.003G341700 exo70 exocyst complex subunit domain containing protein, expressed -
8 Sobic.002G082100 serine/threonine-protein kinase, putative, expressed -
9 Sobic.002G098500 H-BTB6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
10 Sobic.001G146301 - -
11 Sobic.009G105200 PPR repeat containing protein, expressed -
12 Sobic.007G059600 OsBAK1(Ortholog in rice:Yuan et al. (2017))(PubMedID : 31659903)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed K13418: somatic embryogenesis receptor kinase 1
13 Sobic.004G182900 PHD finger protein, putative, expressed -
14 Sobic.005G030400 cytochrome P450, putative, expressed K09588: CYP90A1, cytochrome P450 family 90 subfamily A polypeptide 1
15 Sobic.003G207300 OsFBD3 - F-box and FBD domain containing protein, expressed -
16 Sobic.010G190400 ZOS6-05 - C2H2 zinc finger protein, expressed -
17 Sobic.003G210900 protein kinase, putative, expressed -
18 Sobic.001G495400 PPR repeat domain containing protein, putative, expressed -
19 Sobic.001G482300 3-ketoacyl-CoA synthase 10, putative, expressed K15397: 3-ketoacyl-CoA synthase
20 Sobic.004G294700 F-box family protein, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20


Gene co-expression network
sample Sobic006G223300 Sobic006G223300 Sobic007G065300 Sobic007G065300 Sobic006G223300--Sobic007G065300 Sobic008G038200 Sobic008G038200 Sobic006G223300--Sobic008G038200 Sobic002G425200 Sobic002G425200 Sobic006G223300--Sobic002G425200 Sobic001G448700 Sobic001G448700 Sobic006G223300--Sobic001G448700 Sobic003G096300 Sobic003G096300 Sobic006G223300--Sobic003G096300 Sobic003G177000 Sobic003G177000 Sobic006G223300--Sobic003G177000 Sobic003G341700 Sobic003G341700 Sobic006G223300--Sobic003G341700 Sobic002G082100 Sobic002G082100 Sobic006G223300--Sobic002G082100 Sobic002G098500 Sobic002G098500 Sobic006G223300--Sobic002G098500 Sobic007G065300--Sobic008G038200 Sobic007G032100 Sobic007G032100 Sobic007G065300--Sobic007G032100 Sobic007G165800 Sobic007G165800 Sobic007G065300--Sobic007G165800 Sobic007G065300--Sobic002G098500 Sobic001G434100 Sobic001G434100 Sobic007G065300--Sobic001G434100 Sobic010G020600 Sobic010G020600 Sobic007G065300--Sobic010G020600 Sobic001G221900 Sobic001G221900 Sobic007G065300--Sobic001G221900 Sobic009G235700 Sobic009G235700 Sobic007G065300--Sobic009G235700 Sobic001G298800 Sobic001G298800 Sobic007G065300--Sobic001G298800 Sobic008G038200--Sobic007G065300 Sobic008G038200--Sobic002G098500 Sobic008G038200--Sobic001G298800 Sobic008G038200--Sobic003G096300 Sobic001G518000 Sobic001G518000 Sobic008G038200--Sobic001G518000 Sobic006G241800 Sobic006G241800 Sobic008G038200--Sobic006G241800 Sobic008G038200--Sobic003G177000 Sobic010G135300 Sobic010G135300 Sobic008G038200--Sobic010G135300 Sobic007G128100 Sobic007G128100 Sobic008G038200--Sobic007G128100 Sobic002G425200--Sobic003G177000 Sobic007G159200 Sobic007G159200 Sobic002G425200--Sobic007G159200 Sobic002G425200--Sobic008G038200 Sobic008G088842 Sobic008G088842 Sobic002G425200--Sobic008G088842 Sobic006G280100 Sobic006G280100 Sobic002G425200--Sobic006G280100 Sobic004G199200 Sobic004G199200 Sobic002G425200--Sobic004G199200 Sobic006G067700 Sobic006G067700 Sobic002G425200--Sobic006G067700 Sobic008G080500 Sobic008G080500 Sobic002G425200--Sobic008G080500 Sobic006G112700 Sobic006G112700 Sobic002G425200--Sobic006G112700 Sobic006G047300 Sobic006G047300 Sobic001G448700--Sobic006G047300 Sobic001G161400 Sobic001G161400 Sobic001G448700--Sobic001G161400 Sobic001G202500 Sobic001G202500 Sobic001G448700--Sobic001G202500 Sobic004G301200 Sobic004G301200 Sobic001G448700--Sobic004G301200 Sobic003G209300 Sobic003G209300 Sobic001G448700--Sobic003G209300 Sobic009G105200 Sobic009G105200 Sobic001G448700--Sobic009G105200 Sobic003G210900 Sobic003G210900 Sobic001G448700--Sobic003G210900 Sobic009G004800 Sobic009G004800 Sobic001G448700--Sobic009G004800 Sobic001G448700--Sobic006G223300 Sobic003G096300--Sobic008G038200 Sobic003G096300--Sobic002G098500 Sobic001G482300 Sobic001G482300 Sobic003G096300--Sobic001G482300 Sobic002G216600 Sobic002G216600 Sobic003G096300--Sobic002G216600 Sobic003G096300--Sobic007G065300 Sobic005G204100 Sobic005G204100 Sobic003G096300--Sobic005G204100 Sobic001G047200 Sobic001G047200 Sobic003G096300--Sobic001G047200 Sobic001G384700 Sobic001G384700 Sobic003G096300--Sobic001G384700 Sobic003G096300--Sobic001G434100 Sobic003G177000--Sobic002G425200 Sobic003G177000--Sobic008G038200 Sobic001G300000 Sobic001G300000 Sobic003G177000--Sobic001G300000 Sobic001G541000 Sobic001G541000 Sobic003G177000--Sobic001G541000 Sobic007G161600 Sobic007G161600 Sobic003G177000--Sobic007G161600 Sobic003G177000--Sobic006G280100 Sobic001G523700 Sobic001G523700 Sobic003G177000--Sobic001G523700 Sobic003G177000--Sobic007G159200 Sobic008G045000 Sobic008G045000 Sobic003G177000--Sobic008G045000 Sobic003G341700--Sobic006G112700 Sobic003G341700--Sobic006G067700 Sobic002G162500 Sobic002G162500 Sobic003G341700--Sobic002G162500 Sobic003G341700--Sobic008G080500 Sobic001G258900 Sobic001G258900 Sobic003G341700--Sobic001G258900 Sobic005G200900 Sobic005G200900 Sobic003G341700--Sobic005G200900 Sobic010G038100 Sobic010G038100 Sobic003G341700--Sobic010G038100 Sobic003G127500 Sobic003G127500 Sobic003G341700--Sobic003G127500 Sobic004G355800 Sobic004G355800 Sobic003G341700--Sobic004G355800 Sobic002G377800 Sobic002G377800 Sobic002G082100--Sobic002G377800 Sobic002G082100--Sobic009G105200 Sobic004G129600 Sobic004G129600 Sobic002G082100--Sobic004G129600 Sobic006G238400 Sobic006G238400 Sobic002G082100--Sobic006G238400 Sobic010G138900 Sobic010G138900 Sobic002G082100--Sobic010G138900 Sobic002G082100--Sobic007G159200 Sobic002G052700 Sobic002G052700 Sobic002G082100--Sobic002G052700 Sobic001G451300 Sobic001G451300 Sobic002G082100--Sobic001G451300 Sobic010G085200 Sobic010G085200 Sobic002G082100--Sobic010G085200 Sobic002G098500--Sobic008G038200 Sobic002G098500--Sobic007G065300 Sobic002G098500--Sobic003G096300 Sobic002G098500--Sobic005G204100 Sobic002G098500--Sobic010G135300 Sobic002G098500--Sobic010G020600 Sobic002G098500--Sobic002G216600 Sobic002G098500--Sobic001G221900 Sobic002G098500--Sobic007G032100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.