Gene annotation
Transcriptome id Sobic.001G495400.1
Synonym Sb01g046280
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt Q09EM4 , C5WWX2
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF303
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G23020 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g06710.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000778
Brachypodium KQK23493 , KQK23492
Barley HORVU0Hr1G030090.1 , HORVU3Hr1G017060.13 , HORVU3Hr1G017060.12 , HORVU3Hr1G017060.11 , HORVU3Hr1G017060.10 , HORVU3Hr1G017060.15 , HORVU3Hr1G017060.14 , HORVU3Hr1G017060.9 , HORVU3Hr1G017060.8 , HORVU3Hr1G017060.3 , HORVU3Hr1G017060.2 , HORVU3Hr1G017060.1 , HORVU3Hr1G017060.7 , HORVU3Hr1G017060.6 , HORVU3Hr1G017060.5 , HORVU3Hr1G017060.4 , HORVU3Hr1G073360.6 , HORVU3Hr1G073360.7 , HORVU3Hr1G073360.4 , HORVU3Hr1G073360.5 , HORVU3Hr1G073360.2 , HORVU3Hr1G073360.3 , HORVU3Hr1G073360.1 , HORVU3Hr1G073360.8 , HORVU3Hr1G073360.9 , HORVU3Hr1G073360.18 , HORVU3Hr1G073360.19 , HORVU3Hr1G073360.14 , HORVU3Hr1G073360.15 , HORVU3Hr1G073360.16 , HORVU3Hr1G073360.17 , HORVU3Hr1G073360.10 , HORVU3Hr1G073360.11 , HORVU3Hr1G073360.12 , HORVU3Hr1G073360.13 , HORVU3Hr1G073360.21 , HORVU3Hr1G073360.20 , HORVU3Hr1G073360.23 , HORVU3Hr1G073360.22 , HORVU3Hr1G073360.25 , HORVU3Hr1G073360.24
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G097900 expressed protein -
2 Sobic.002G386900 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
3 Sobic.002G292800 MORN repeat domain containing protein, expressed -
4 Sobic.001G032200 transporter, major facilitator superfamily domain containing protein, expressed -
5 Sobic.006G170900 growth regulator related protein, putative, expressed -
6 Sobic.002G122100 - -
7 Sobic.004G106250 - -
8 Sobic.001G417500 expressed protein -
9 Sobic.003G124600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
10 Sobic.010G204900 formamidopyrimidine-DNA glycosylase, putative, expressed K10563: mutM, formamidopyrimidine-DNA glycosylase
11 Sobic.002G239601 - -
12 Sobic.008G011300 GIY-YIG catalytic domain containing protein, putative, expressed K15078: structure-specific endonuclease subunit SLX1
13 Sobic.003G016500 histone-lysine N-methyltransferase ATX5, putative, expressed -
14 Sobic.006G224100 expressed protein -
15 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
16 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
17 Sobic.007G211800 kinase, pfkB family, putative, expressed -
18 Sobic.003G299500 expressed protein -
19 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
20 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin


Gene co-expression network
sample Sobic001G495400 Sobic001G495400 Sobic004G097900 Sobic004G097900 Sobic001G495400--Sobic004G097900 Sobic002G386900 Sobic002G386900 Sobic001G495400--Sobic002G386900 Sobic002G292800 Sobic002G292800 Sobic001G495400--Sobic002G292800 Sobic001G032200 Sobic001G032200 Sobic001G495400--Sobic001G032200 Sobic006G170900 Sobic006G170900 Sobic001G495400--Sobic006G170900 Sobic002G122100 Sobic002G122100 Sobic001G495400--Sobic002G122100 Sobic004G106250 Sobic004G106250 Sobic001G495400--Sobic004G106250 Sobic001G417500 Sobic001G417500 Sobic001G495400--Sobic001G417500 Sobic003G124600 Sobic003G124600 Sobic001G495400--Sobic003G124600 Sobic004G097900--Sobic002G292800 Sobic004G097900--Sobic002G386900 Sobic006G191200 Sobic006G191200 Sobic004G097900--Sobic006G191200 Sobic004G097900--Sobic001G495400 Sobic006G029100 Sobic006G029100 Sobic004G097900--Sobic006G029100 Sobic002G112600 Sobic002G112600 Sobic004G097900--Sobic002G112600 Sobic003G218200 Sobic003G218200 Sobic004G097900--Sobic003G218200 Sobic004G097900--Sobic006G170900 Sobic004G097900--Sobic004G106250 Sobic002G386600 Sobic002G386600 Sobic002G386900--Sobic002G386600 Sobic002G386900--Sobic004G097900 Sobic001G123600 Sobic001G123600 Sobic002G386900--Sobic001G123600 Sobic002G386900--Sobic006G191200 Sobic007G034200 Sobic007G034200 Sobic002G386900--Sobic007G034200 Sobic001G051400 Sobic001G051400 Sobic002G386900--Sobic001G051400 Sobic001G200200 Sobic001G200200 Sobic002G386900--Sobic001G200200 Sobic002G239601 Sobic002G239601 Sobic002G386900--Sobic002G239601 Sobic002G386900--Sobic002G292800 Sobic002G292800--Sobic004G097900 Sobic006G245900 Sobic006G245900 Sobic002G292800--Sobic006G245900 Sobic002G079100 Sobic002G079100 Sobic002G292800--Sobic002G079100 Sobic002G292800--Sobic002G386900 Sobic002G292800--Sobic006G191200 Sobic002G063900 Sobic002G063900 Sobic002G292800--Sobic002G063900 Sobic002G292800--Sobic003G124600 Sobic002G292800--Sobic006G170900 Sobic002G292800--Sobic001G495400 Sobic008G011300 Sobic008G011300 Sobic001G032200--Sobic008G011300 Sobic010G204900 Sobic010G204900 Sobic001G032200--Sobic010G204900 Sobic007G211800 Sobic007G211800 Sobic001G032200--Sobic007G211800 Sobic001G032200--Sobic001G495400 Sobic004G162500 Sobic004G162500 Sobic001G032200--Sobic004G162500 Sobic009G160500 Sobic009G160500 Sobic001G032200--Sobic009G160500 Sobic001G346600 Sobic001G346600 Sobic001G032200--Sobic001G346600 Sobic002G138300 Sobic002G138300 Sobic001G032200--Sobic002G138300 Sobic001G025800 Sobic001G025800 Sobic001G032200--Sobic001G025800 Sobic005G123400 Sobic005G123400 Sobic006G170900--Sobic005G123400 Sobic006G170900--Sobic003G124600 Sobic003G113300 Sobic003G113300 Sobic006G170900--Sobic003G113300 Sobic006G170900--Sobic007G034200 Sobic006G103700 Sobic006G103700 Sobic006G170900--Sobic006G103700 Sobic006G170900--Sobic002G292800 Sobic003G194800 Sobic003G194800 Sobic006G170900--Sobic003G194800 Sobic006G170900--Sobic004G106250 Sobic006G237500 Sobic006G237500 Sobic006G170900--Sobic006G237500 Sobic002G122100--Sobic001G495400 Sobic002G122100--Sobic001G417500 Sobic002G031700 Sobic002G031700 Sobic002G122100--Sobic002G031700 Sobic002G431400 Sobic002G431400 Sobic002G122100--Sobic002G431400 Sobic002G122100--Sobic010G204900 Sobic004G176000 Sobic004G176000 Sobic002G122100--Sobic004G176000 Sobic004G107200 Sobic004G107200 Sobic002G122100--Sobic004G107200 Sobic010G100800 Sobic010G100800 Sobic002G122100--Sobic010G100800 Sobic004G351800 Sobic004G351800 Sobic002G122100--Sobic004G351800 Sobic003G299500 Sobic003G299500 Sobic004G106250--Sobic003G299500 Sobic003G016500 Sobic003G016500 Sobic004G106250--Sobic003G016500 Sobic004G106250--Sobic006G245900 Sobic004G106250--Sobic002G292800 Sobic004G106250--Sobic006G170900 Sobic002G235900 Sobic002G235900 Sobic004G106250--Sobic002G235900 Sobic004G106250--Sobic006G191200 Sobic009G102000 Sobic009G102000 Sobic004G106250--Sobic009G102000 Sobic004G106250--Sobic007G034200 Sobic006G269800 Sobic006G269800 Sobic001G417500--Sobic006G269800 Sobic001G417500--Sobic004G351800 Sobic003G309050 Sobic003G309050 Sobic001G417500--Sobic003G309050 Sobic002G043100 Sobic002G043100 Sobic001G417500--Sobic002G043100 Sobic001G393900 Sobic001G393900 Sobic001G417500--Sobic001G393900 Sobic008G017100 Sobic008G017100 Sobic001G417500--Sobic008G017100 Sobic001G417500--Sobic004G107200 Sobic007G173500 Sobic007G173500 Sobic001G417500--Sobic007G173500 Sobic007G000300 Sobic007G000300 Sobic001G417500--Sobic007G000300 Sobic003G124600--Sobic002G079100 Sobic003G124600--Sobic006G170900 Sobic003G124600--Sobic002G292800 Sobic003G124600--Sobic003G016500 Sobic003G124600--Sobic003G299500 Sobic003G124600--Sobic007G034200 Sobic003G124600--Sobic009G102000 Sobic003G124600--Sobic003G113300 Sobic001G424600 Sobic001G424600 Sobic003G124600--Sobic001G424600
Octagon: transcription factors


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