Gene annotation
Transcriptome id Sobic.006G190400.1
Synonym Sb06g026370, NGA1
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt C5YEI6
Pfam PF02362
Panther DB PTHR31140 PTHR31140:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT2G46870 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os02g45850.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056681 , Zm00025a031331 , Zm00025a032333 , Zm00025a000289 , Zm00025a000288 , Zm00025a000286 , Zm00025a010076 , Zm00025a027935 , Zm00025a023512 , Zm00025a038878 , Zm00025a021537 , Zm00025a000291
Brachypodium KQK00795 , KQJ84190 , KQK23932 , PNT61705 , KQK20030 , KQK09293 , PNT69241
Barley HORVU4Hr1G084950.1 , HORVU4Hr1G084950.2 , HORVU4Hr1G084950.3 , HORVU1Hr1G082670.2 , HORVU1Hr1G082670.3 , HORVU0Hr1G022200.1 , HORVU0Hr1G022200.2 , HORVU0Hr1G022200.3 , HORVU1Hr1G082670.10 , HORVU5Hr1G012420.2 , HORVU5Hr1G012420.3 , HORVU5Hr1G012420.1 , HORVU5Hr1G012420.6 , HORVU5Hr1G012420.7 , HORVU5Hr1G012420.8 , HORVU7Hr1G046950.1 , HORVU5Hr1G122180.5 , HORVU5Hr1G122180.4 , HORVU5Hr1G122180.7 , HORVU5Hr1G122180.6 , HORVU5Hr1G122180.1 , HORVU5Hr1G122180.3 , HORVU5Hr1G122180.2 , HORVU5Hr1G122180.8 , HORVU1Hr1G082670.8 , HORVU1Hr1G082670.9 , HORVU1Hr1G082670.6 , HORVU1Hr1G082670.7 , HORVU1Hr1G082670.4 , HORVU1Hr1G082670.5 , HORVU1Hr1G082670.1 , HORVU5Hr1G122180.11 , HORVU5Hr1G122180.10 , HORVU5Hr1G122180.13 , HORVU5Hr1G122180.15 , HORVU5Hr1G122180.14 , HORVU5Hr1G122180.16 , HORVU7Hr1G002230.1 , HORVU6Hr1G066190.2 , HORVU6Hr1G066190.1 , HORVU1Hr1G051780.2
Wheat TraesCS4D02G348900 , TraesCS4D02G348900 , TraesCS5A02G524700 , TraesCS5A02G524700 , TraesCS7D02G022400 , TraesCS4A02G464900 , TraesCS1B02G215000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G127400 inactive receptor kinase At1g27190 precursor, putative, expressed -
2 Sobic.006G162800 expressed protein -
3 Sobic.001G215500 expressed protein -
4 Sobic.004G225300 e2f-associated phosphoprotein, putative, expressed -
5 Sobic.001G120900 photoperiodic flowering time gene(PubMedID : 22394582)@-(PubMedID : 23108465)@GRAS family transcription factor domain containing protein, expressed K14494: DELLA protein
6 Sobic.003G342900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
7 Sobic.001G513600 C-methyltransferase, putative, expressed K08242: 24-methylenesterol C-methyltransferase
8 Sobic.010G001800 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
9 Sobic.004G027000 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
10 Sobic.002G241500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
11 Sobic.001G039800 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
12 Sobic.004G117800 Ser/Thr protein phosphatase family protein, putative, expressed K18467: vacuolar protein sorting-associated protein 29
13 Sobic.001G279200 PHLOEM 2-LIKE A10, putative, expressed -
14 Sobic.001G528200 B3 DNA binding domain containing protein, expressed -
15 Sobic.002G259400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
16 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
17 Sobic.010G094800 pro-resilin precursor, putative, expressed -
18 Sobic.006G098100 protein phosphotase protein, putative, expressed -
19 Sobic.006G181700 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
20 Sobic.006G179800 HMG1/2, putative, expressed -


Gene co-expression network
sample Sobic006G190400 Sobic006G190400 Sobic006G127400 Sobic006G127400 Sobic006G190400--Sobic006G127400 Sobic006G162800 Sobic006G162800 Sobic006G190400--Sobic006G162800 Sobic001G215500 Sobic001G215500 Sobic006G190400--Sobic001G215500 Sobic004G225300 Sobic004G225300 Sobic006G190400--Sobic004G225300 Sobic001G120900 Sobic001G120900 Sobic006G190400--Sobic001G120900 Sobic003G342900 Sobic003G342900 Sobic006G190400--Sobic003G342900 Sobic001G513600 Sobic001G513600 Sobic006G190400--Sobic001G513600 Sobic010G001800 Sobic010G001800 Sobic006G190400--Sobic010G001800 Sobic004G027000 Sobic004G027000 Sobic006G190400--Sobic004G027000 Sobic002G193400 Sobic002G193400 Sobic006G127400--Sobic002G193400 Sobic001G427500 Sobic001G427500 Sobic006G127400--Sobic001G427500 Sobic002G117200 Sobic002G117200 Sobic006G127400--Sobic002G117200 Sobic007G073700 Sobic007G073700 Sobic006G127400--Sobic007G073700 Sobic007G029100 Sobic007G029100 Sobic006G127400--Sobic007G029100 Sobic001G022600 Sobic001G022600 Sobic006G127400--Sobic001G022600 Sobic001G418800 Sobic001G418800 Sobic006G127400--Sobic001G418800 Sobic004G117800 Sobic004G117800 Sobic006G127400--Sobic004G117800 Sobic004G018400 Sobic004G018400 Sobic006G127400--Sobic004G018400 Sobic006G162800--Sobic001G120900 Sobic002G082100 Sobic002G082100 Sobic006G162800--Sobic002G082100 Sobic006G162800--Sobic006G190400 Sobic004G192300 Sobic004G192300 Sobic006G162800--Sobic004G192300 Sobic001G039800 Sobic001G039800 Sobic006G162800--Sobic001G039800 Sobic001G146301 Sobic001G146301 Sobic006G162800--Sobic001G146301 Sobic006G223300 Sobic006G223300 Sobic006G162800--Sobic006G223300 Sobic003G306800 Sobic003G306800 Sobic006G162800--Sobic003G306800 Sobic006G162800--Sobic001G513600 Sobic009G207100 Sobic009G207100 Sobic001G215500--Sobic009G207100 Sobic004G006700 Sobic004G006700 Sobic001G215500--Sobic004G006700 Sobic008G093200 Sobic008G093200 Sobic001G215500--Sobic008G093200 Sobic010G224900 Sobic010G224900 Sobic001G215500--Sobic010G224900 Sobic004G182500 Sobic004G182500 Sobic001G215500--Sobic004G182500 Sobic001G215500--Sobic004G027000 Sobic001G202400 Sobic001G202400 Sobic001G215500--Sobic001G202400 Sobic001G215500--Sobic004G225300 Sobic006G195400 Sobic006G195400 Sobic001G215500--Sobic006G195400 Sobic004G225300--Sobic004G027000 Sobic001G422700 Sobic001G422700 Sobic004G225300--Sobic001G422700 Sobic002G394800 Sobic002G394800 Sobic004G225300--Sobic002G394800 Sobic004G206300 Sobic004G206300 Sobic004G225300--Sobic004G206300 Sobic009G056300 Sobic009G056300 Sobic004G225300--Sobic009G056300 Sobic004G212700 Sobic004G212700 Sobic004G225300--Sobic004G212700 Sobic002G139000 Sobic002G139000 Sobic004G225300--Sobic002G139000 Sobic006G252100 Sobic006G252100 Sobic004G225300--Sobic006G252100 Sobic006G179800 Sobic006G179800 Sobic004G225300--Sobic006G179800 Sobic002G229900 Sobic002G229900 Sobic001G120900--Sobic002G229900 Sobic001G120900--Sobic004G027000 Sobic002G203500 Sobic002G203500 Sobic001G120900--Sobic002G203500 Sobic006G046600 Sobic006G046600 Sobic001G120900--Sobic006G046600 Sobic004G229100 Sobic004G229100 Sobic001G120900--Sobic004G229100 Sobic009G164900 Sobic009G164900 Sobic001G120900--Sobic009G164900 Sobic001G217100 Sobic001G217100 Sobic001G120900--Sobic001G217100 Sobic001G382400 Sobic001G382400 Sobic001G120900--Sobic001G382400 Sobic001G120900--Sobic006G162800 Sobic003G316601 Sobic003G316601 Sobic003G342900--Sobic003G316601 Sobic007G147200 Sobic007G147200 Sobic003G342900--Sobic007G147200 Sobic010G014500 Sobic010G014500 Sobic003G342900--Sobic010G014500 Sobic001G138800 Sobic001G138800 Sobic003G342900--Sobic001G138800 Sobic009G087700 Sobic009G087700 Sobic003G342900--Sobic009G087700 Sobic004G237000 Sobic004G237000 Sobic003G342900--Sobic004G237000 Sobic007G132900 Sobic007G132900 Sobic003G342900--Sobic007G132900 Sobic006G107500 Sobic006G107500 Sobic003G342900--Sobic006G107500 Sobic001G143400 Sobic001G143400 Sobic003G342900--Sobic001G143400 Sobic005G089000 Sobic005G089000 Sobic001G513600--Sobic005G089000 Sobic002G328100 Sobic002G328100 Sobic001G513600--Sobic002G328100 Sobic001G513600--Sobic004G018400 Sobic001G093600 Sobic001G093600 Sobic001G513600--Sobic001G093600 Sobic003G291400 Sobic003G291400 Sobic001G513600--Sobic003G291400 Sobic003G245900 Sobic003G245900 Sobic001G513600--Sobic003G245900 Sobic009G214800 Sobic009G214800 Sobic001G513600--Sobic009G214800 Sobic002G175900 Sobic002G175900 Sobic001G513600--Sobic002G175900 Sobic001G513600--Sobic001G215500 Sobic001G440900 Sobic001G440900 Sobic010G001800--Sobic001G440900 Sobic007G108100 Sobic007G108100 Sobic010G001800--Sobic007G108100 Sobic002G241500 Sobic002G241500 Sobic010G001800--Sobic002G241500 Sobic010G159100 Sobic010G159100 Sobic010G001800--Sobic010G159100 Sobic001G505000 Sobic001G505000 Sobic010G001800--Sobic001G505000 Sobic008G008300 Sobic008G008300 Sobic010G001800--Sobic008G008300 Sobic010G001800--Sobic008G093200 Sobic001G108400 Sobic001G108400 Sobic010G001800--Sobic001G108400 Sobic009G001200 Sobic009G001200 Sobic010G001800--Sobic009G001200 Sobic004G027000--Sobic004G225300 Sobic004G027000--Sobic004G206300 Sobic004G027000--Sobic002G139000 Sobic004G027000--Sobic009G056300 Sobic004G027000--Sobic002G394800 Sobic004G027000--Sobic001G422700 Sobic001G280400 Sobic001G280400 Sobic004G027000--Sobic001G280400 Sobic005G164500 Sobic005G164500 Sobic004G027000--Sobic005G164500 Sobic004G184000 Sobic004G184000 Sobic004G027000--Sobic004G184000
Octagon: transcription factors


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