Gene annotation
Transcriptome id Sobic.001G528200.1,Sobic.001G528200.2
Synonym NGA1, Sb01g049150
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt C5X0X2
Pfam PF02362
Panther DB PTHR31140 PTHR31140:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT1G01030 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os03g02900.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056681 , Zm00025a052255 , Zm00025a032333 , Zm00025a000289 , Zm00025a000288 , Zm00025a000287 , Zm00025a000286 , Zm00025a003162 , Zm00025a010076 , Zm00025a027935 , Zm00025a023512 , Zm00025a038878 , Zm00025a021537 , Zm00025a000290 , Zm00025a000291 , Zm00025a000292
Brachypodium KQK00795 , KQJ84190 , KQK23932 , KQJ97599 , PNT61705 , KQK20030 , KQK09293 , PNT69241
Barley HORVU4Hr1G084950.1 , HORVU4Hr1G084950.2 , HORVU4Hr1G084950.3 , HORVU5Hr1G122180.5 , HORVU5Hr1G122180.7 , HORVU5Hr1G122180.6 , HORVU5Hr1G122180.1 , HORVU0Hr1G022200.1 , HORVU0Hr1G022200.2 , HORVU0Hr1G022200.3 , HORVU1Hr1G082670.10 , HORVU5Hr1G012420.2 , HORVU5Hr1G012420.3 , HORVU5Hr1G012420.1 , HORVU5Hr1G012420.6 , HORVU5Hr1G012420.7 , HORVU5Hr1G012420.8 , HORVU7Hr1G046950.1 , HORVU4Hr1G082030.1 , HORVU5Hr1G122180.4 , HORVU4Hr1G082030.3 , HORVU4Hr1G082030.2 , HORVU4Hr1G082030.5 , HORVU4Hr1G082030.4 , HORVU5Hr1G122180.3 , HORVU5Hr1G122180.2 , HORVU5Hr1G122180.8 , HORVU1Hr1G082670.8 , HORVU1Hr1G082670.9 , HORVU1Hr1G082670.6 , HORVU1Hr1G082670.7 , HORVU1Hr1G082670.4 , HORVU1Hr1G082670.5 , HORVU1Hr1G082670.2 , HORVU1Hr1G082670.3 , HORVU1Hr1G082670.1 , HORVU5Hr1G122180.11 , HORVU5Hr1G122180.10 , HORVU5Hr1G122180.13 , HORVU5Hr1G122180.15 , HORVU5Hr1G122180.14 , HORVU5Hr1G122180.16 , HORVU7Hr1G002230.1 , HORVU6Hr1G066190.2 , HORVU6Hr1G066190.1 , HORVU1Hr1G051780.2
Wheat TraesCS1A02G200500 , TraesCS7D02G022400 , TraesCS4A02G464900 , TraesCS4D02G348900 , TraesCS4D02G348900 , TraesCS5A02G524700 , TraesCS5A02G524700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G167800 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
2 Sobic.003G034400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger/CCCH transcription factor, putative, expressed -
3 Sobic.003G358400 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed K09591: steroid 5-alpha-reductase
4 Sobic.010G194300 VQ domain containing protein, putative, expressed -
5 Sobic.003G296300 WRKY13, expressed -
6 Sobic.006G246100 one cut domain family member 3, putative, expressed -
7 Sobic.001G093900 stem-specific protein TSJT1, putative, expressed -
8 Sobic.004G151400 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
9 Sobic.003G123300 zinc finger, C3HC4 type domain containing protein, expressed K16282: E3 ubiquitin-protein ligase RHA2
10 Sobic.005G080200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, putative, expressed -
11 Sobic.006G181700 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
12 Sobic.001G052200 protein kinase domain containing protein, expressed -
13 Sobic.004G028400 SWIB/MDM2 domain containing protein, expressed -
14 Sobic.003G085700 expressed protein -
15 Sobic.004G010300 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
16 Sobic.004G311300 expressed protein -
17 Sobic.001G526000 hydrolase, alpha/beta fold family protein, putative, expressed -
18 Sobic.001G144400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acetyltransferase, GNAT family, putative, expressed -
19 Sobic.003G271201 - -
20 Sobic.006G190400 B3 DNA binding domain containing protein, expressed -


Gene co-expression network
sample Sobic001G528200 Sobic001G528200 Sobic006G167800 Sobic006G167800 Sobic001G528200--Sobic006G167800 Sobic003G034400 Sobic003G034400 Sobic001G528200--Sobic003G034400 Sobic003G358400 Sobic003G358400 Sobic001G528200--Sobic003G358400 Sobic010G194300 Sobic010G194300 Sobic001G528200--Sobic010G194300 Sobic003G296300 Sobic003G296300 Sobic001G528200--Sobic003G296300 Sobic006G246100 Sobic006G246100 Sobic001G528200--Sobic006G246100 Sobic001G093900 Sobic001G093900 Sobic001G528200--Sobic001G093900 Sobic004G151400 Sobic004G151400 Sobic001G528200--Sobic004G151400 Sobic003G123300 Sobic003G123300 Sobic001G528200--Sobic003G123300 Sobic001G526000 Sobic001G526000 Sobic006G167800--Sobic001G526000 Sobic006G167800--Sobic003G296300 Sobic004G110400 Sobic004G110400 Sobic006G167800--Sobic004G110400 Sobic002G376000 Sobic002G376000 Sobic006G167800--Sobic002G376000 Sobic010G157500 Sobic010G157500 Sobic006G167800--Sobic010G157500 Sobic006G167800--Sobic001G093900 Sobic009G067400 Sobic009G067400 Sobic006G167800--Sobic009G067400 Sobic001G195100 Sobic001G195100 Sobic006G167800--Sobic001G195100 Sobic001G144400 Sobic001G144400 Sobic006G167800--Sobic001G144400 Sobic002G421600 Sobic002G421600 Sobic003G034400--Sobic002G421600 Sobic003G034400--Sobic003G123300 Sobic006G269200 Sobic006G269200 Sobic003G034400--Sobic006G269200 Sobic009G100800 Sobic009G100800 Sobic003G034400--Sobic009G100800 Sobic006G047000 Sobic006G047000 Sobic003G034400--Sobic006G047000 Sobic001G078200 Sobic001G078200 Sobic003G034400--Sobic001G078200 Sobic009G064000 Sobic009G064000 Sobic003G034400--Sobic009G064000 Sobic005G085600 Sobic005G085600 Sobic003G034400--Sobic005G085600 Sobic003G293900 Sobic003G293900 Sobic003G034400--Sobic003G293900 Sobic010G066300 Sobic010G066300 Sobic003G358400--Sobic010G066300 Sobic003G262100 Sobic003G262100 Sobic003G358400--Sobic003G262100 Sobic010G171501 Sobic010G171501 Sobic003G358400--Sobic010G171501 Sobic001G526900 Sobic001G526900 Sobic003G358400--Sobic001G526900 Sobic001G345400 Sobic001G345400 Sobic003G358400--Sobic001G345400 Sobic006G181700 Sobic006G181700 Sobic003G358400--Sobic006G181700 Sobic001G530350 Sobic001G530350 Sobic003G358400--Sobic001G530350 Sobic001G285000 Sobic001G285000 Sobic003G358400--Sobic001G285000 Sobic004G018200 Sobic004G018200 Sobic003G358400--Sobic004G018200 Sobic010G194300--Sobic006G246100 Sobic005G080200 Sobic005G080200 Sobic010G194300--Sobic005G080200 Sobic004G010300 Sobic004G010300 Sobic010G194300--Sobic004G010300 Sobic003G285500 Sobic003G285500 Sobic010G194300--Sobic003G285500 Sobic010G194300--Sobic003G296300 Sobic003G037500 Sobic003G037500 Sobic010G194300--Sobic003G037500 Sobic009G065300 Sobic009G065300 Sobic010G194300--Sobic009G065300 Sobic010G194300--Sobic006G047000 Sobic010G250600 Sobic010G250600 Sobic010G194300--Sobic010G250600 Sobic003G296300--Sobic001G345400 Sobic003G296300--Sobic006G246100 Sobic004G101000 Sobic004G101000 Sobic003G296300--Sobic004G101000 Sobic003G296300--Sobic006G167800 Sobic003G296300--Sobic001G093900 Sobic003G296300--Sobic010G157500 Sobic009G038000 Sobic009G038000 Sobic003G296300--Sobic009G038000 Sobic003G296300--Sobic001G526000 Sobic003G296300--Sobic001G195100 Sobic006G246100--Sobic003G296300 Sobic006G246100--Sobic005G080200 Sobic006G246100--Sobic010G194300 Sobic002G319100 Sobic002G319100 Sobic006G246100--Sobic002G319100 Sobic006G246100--Sobic001G345400 Sobic004G114400 Sobic004G114400 Sobic006G246100--Sobic004G114400 Sobic006G246100--Sobic004G010300 Sobic010G194900 Sobic010G194900 Sobic006G246100--Sobic010G194900 Sobic004G195000 Sobic004G195000 Sobic006G246100--Sobic004G195000 Sobic001G093900--Sobic003G296300 Sobic001G093900--Sobic001G530350 Sobic001G024500 Sobic001G024500 Sobic001G093900--Sobic001G024500 Sobic001G182600 Sobic001G182600 Sobic001G093900--Sobic001G182600 Sobic001G093900--Sobic006G167800 Sobic001G093900--Sobic002G376000 Sobic001G093900--Sobic001G526000 Sobic001G075000 Sobic001G075000 Sobic001G093900--Sobic001G075000 Sobic003G013600 Sobic003G013600 Sobic001G093900--Sobic003G013600 Sobic001G131400 Sobic001G131400 Sobic004G151400--Sobic001G131400 Sobic009G131100 Sobic009G131100 Sobic004G151400--Sobic009G131100 Sobic008G127500 Sobic008G127500 Sobic004G151400--Sobic008G127500 Sobic009G114500 Sobic009G114500 Sobic004G151400--Sobic009G114500 Sobic010G135000 Sobic010G135000 Sobic004G151400--Sobic010G135000 Sobic004G293100 Sobic004G293100 Sobic004G151400--Sobic004G293100 Sobic001G339801 Sobic001G339801 Sobic004G151400--Sobic001G339801 Sobic005G011400 Sobic005G011400 Sobic004G151400--Sobic005G011400 Sobic004G265700 Sobic004G265700 Sobic004G151400--Sobic004G265700 Sobic003G123300--Sobic003G013600 Sobic001G465100 Sobic001G465100 Sobic003G123300--Sobic001G465100 Sobic006G051100 Sobic006G051100 Sobic003G123300--Sobic006G051100 Sobic001G225600 Sobic001G225600 Sobic003G123300--Sobic001G225600 Sobic003G123300--Sobic002G421600 Sobic006G241350 Sobic006G241350 Sobic003G123300--Sobic006G241350 Sobic002G367700 Sobic002G367700 Sobic003G123300--Sobic002G367700 Sobic003G123300--Sobic001G530350 Sobic010G267000 Sobic010G267000 Sobic003G123300--Sobic010G267000
Octagon: transcription factors


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