Gene annotation
Transcriptome id Sobic.004G028400.1
Synonym Sb04g002500
Functional annotation SWIB/MDM2 domain containing protein, expressed
UniProt C5XTT3
Pfam PF02201
Panther DB PTHR13844 PTHR13844:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G14880 : SWIB/MDM2 domain superfamily protein
RAP-DB (Rice) LOC_Os02g03730.1 : SWIB/MDM2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034993
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G028400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G311300 expressed protein -
2 Sobic.003G401400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
3 Sobic.002G328200 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
4 Sobic.010G082850 - -
5 Sobic.004G325200 60S ribosome subunit biogenesis protein NIP7, putative, expressed K07565: 60S ribosome subunit biogenesis protein NIP7
6 Sobic.003G358400 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed K09591: steroid 5-alpha-reductase
7 Sobic.004G252100 ribosomal protein L7Ae, putative, expressed K11129: NHP2, H/ACA ribonucleoprotein complex subunit 2
8 Sobic.001G081400 ankyrin repeat domain containing protein, putative, expressed K18477: type IV protein arginine methyltransferase
9 Sobic.006G108600 prohibitin, putative, expressed K17080: prohibitin 1
10 Sobic.001G117500 AT hook-containing DNA-binding protein, putative, expressed -
11 Sobic.002G353500 ruvB-like 2, putative, expressed K11338: RUVBL2, RVB2, RuvB-like protein 2
12 Sobic.007G034400 RNA recognition motif containing protein, putative, expressed -
13 Sobic.003G244300 C2 domain containing protein, putative, expressed -
14 Sobic.002G092801 - -
15 Sobic.005G080200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, putative, expressed -
16 Sobic.010G171501 - -
17 Sobic.001G061101 - -
18 Sobic.003G015400 ribosomal protein S6 family protein, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
19 Sobic.006G246100 one cut domain family member 3, putative, expressed -
20 Sobic.003G375100 snRK1-interacting protein 1, putative, expressed -


Gene co-expression network
sample Sobic004G028400 Sobic004G028400 Sobic004G311300 Sobic004G311300 Sobic004G028400--Sobic004G311300 Sobic003G401400 Sobic003G401400 Sobic004G028400--Sobic003G401400 Sobic002G328200 Sobic002G328200 Sobic004G028400--Sobic002G328200 Sobic010G082850 Sobic010G082850 Sobic004G028400--Sobic010G082850 Sobic004G325200 Sobic004G325200 Sobic004G028400--Sobic004G325200 Sobic003G358400 Sobic003G358400 Sobic004G028400--Sobic003G358400 Sobic004G252100 Sobic004G252100 Sobic004G028400--Sobic004G252100 Sobic001G081400 Sobic001G081400 Sobic004G028400--Sobic001G081400 Sobic006G108600 Sobic006G108600 Sobic004G028400--Sobic006G108600 Sobic001G536500 Sobic001G536500 Sobic004G311300--Sobic001G536500 Sobic003G135700 Sobic003G135700 Sobic004G311300--Sobic003G135700 Sobic004G352900 Sobic004G352900 Sobic004G311300--Sobic004G352900 Sobic001G061101 Sobic001G061101 Sobic004G311300--Sobic001G061101 Sobic010G194900 Sobic010G194900 Sobic004G311300--Sobic010G194900 Sobic006G010600 Sobic006G010600 Sobic004G311300--Sobic006G010600 Sobic003G110200 Sobic003G110200 Sobic004G311300--Sobic003G110200 Sobic005G080200 Sobic005G080200 Sobic004G311300--Sobic005G080200 Sobic003G268200 Sobic003G268200 Sobic004G311300--Sobic003G268200 Sobic001G141300 Sobic001G141300 Sobic003G401400--Sobic001G141300 Sobic008G185900 Sobic008G185900 Sobic003G401400--Sobic008G185900 Sobic002G376400 Sobic002G376400 Sobic003G401400--Sobic002G376400 Sobic003G401400--Sobic001G081400 Sobic004G309500 Sobic004G309500 Sobic003G401400--Sobic004G309500 Sobic007G034400 Sobic007G034400 Sobic003G401400--Sobic007G034400 Sobic008G171800 Sobic008G171800 Sobic003G401400--Sobic008G171800 Sobic001G202400 Sobic001G202400 Sobic003G401400--Sobic001G202400 Sobic003G401400--Sobic004G028400 Sobic002G407100 Sobic002G407100 Sobic002G328200--Sobic002G407100 Sobic009G121900 Sobic009G121900 Sobic002G328200--Sobic009G121900 Sobic002G328200--Sobic004G028400 Sobic002G328200--Sobic003G110200 Sobic006G266300 Sobic006G266300 Sobic002G328200--Sobic006G266300 Sobic010G238800 Sobic010G238800 Sobic002G328200--Sobic010G238800 Sobic006G131600 Sobic006G131600 Sobic002G328200--Sobic006G131600 Sobic009G065300 Sobic009G065300 Sobic002G328200--Sobic009G065300 Sobic002G092801 Sobic002G092801 Sobic002G328200--Sobic002G092801 Sobic007G134900 Sobic007G134900 Sobic010G082850--Sobic007G134900 Sobic001G533500 Sobic001G533500 Sobic010G082850--Sobic001G533500 Sobic010G082850--Sobic004G252100 Sobic008G094600 Sobic008G094600 Sobic010G082850--Sobic008G094600 Sobic010G230700 Sobic010G230700 Sobic010G082850--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic010G082850--Sobic002G115000 Sobic009G223300 Sobic009G223300 Sobic010G082850--Sobic009G223300 Sobic010G076400 Sobic010G076400 Sobic010G082850--Sobic010G076400 Sobic003G296800 Sobic003G296800 Sobic010G082850--Sobic003G296800 Sobic010G054200 Sobic010G054200 Sobic004G325200--Sobic010G054200 Sobic008G100000 Sobic008G100000 Sobic004G325200--Sobic008G100000 Sobic003G244300 Sobic003G244300 Sobic004G325200--Sobic003G244300 Sobic006G081100 Sobic006G081100 Sobic004G325200--Sobic006G081100 Sobic001G225700 Sobic001G225700 Sobic004G325200--Sobic001G225700 Sobic006G115000 Sobic006G115000 Sobic004G325200--Sobic006G115000 Sobic004G325200--Sobic003G268200 Sobic003G073900 Sobic003G073900 Sobic004G325200--Sobic003G073900 Sobic001G510800 Sobic001G510800 Sobic004G325200--Sobic001G510800 Sobic010G066300 Sobic010G066300 Sobic003G358400--Sobic010G066300 Sobic003G262100 Sobic003G262100 Sobic003G358400--Sobic003G262100 Sobic010G171501 Sobic010G171501 Sobic003G358400--Sobic010G171501 Sobic001G526900 Sobic001G526900 Sobic003G358400--Sobic001G526900 Sobic001G345400 Sobic001G345400 Sobic003G358400--Sobic001G345400 Sobic006G181700 Sobic006G181700 Sobic003G358400--Sobic006G181700 Sobic001G530350 Sobic001G530350 Sobic003G358400--Sobic001G530350 Sobic001G285000 Sobic001G285000 Sobic003G358400--Sobic001G285000 Sobic004G018200 Sobic004G018200 Sobic003G358400--Sobic004G018200 Sobic001G016500 Sobic001G016500 Sobic004G252100--Sobic001G016500 Sobic005G019700 Sobic005G019700 Sobic004G252100--Sobic005G019700 Sobic006G116700 Sobic006G116700 Sobic004G252100--Sobic006G116700 Sobic001G018900 Sobic001G018900 Sobic004G252100--Sobic001G018900 Sobic007G019000 Sobic007G019000 Sobic004G252100--Sobic007G019000 Sobic007G190800 Sobic007G190800 Sobic004G252100--Sobic007G190800 Sobic004G252100--Sobic001G533500 Sobic009G050300 Sobic009G050300 Sobic004G252100--Sobic009G050300 Sobic007G197800 Sobic007G197800 Sobic004G252100--Sobic007G197800 Sobic001G081400--Sobic007G034400 Sobic003G310600 Sobic003G310600 Sobic001G081400--Sobic003G310600 Sobic002G353500 Sobic002G353500 Sobic001G081400--Sobic002G353500 Sobic001G081400--Sobic008G094600 Sobic001G069400 Sobic001G069400 Sobic001G081400--Sobic001G069400 Sobic001G081400--Sobic001G202400 Sobic001G081400--Sobic003G244300 Sobic003G015400 Sobic003G015400 Sobic001G081400--Sobic003G015400 Sobic008G103900 Sobic008G103900 Sobic001G081400--Sobic008G103900 Sobic007G029400 Sobic007G029400 Sobic006G108600--Sobic007G029400 Sobic006G108600--Sobic010G054200 Sobic008G135000 Sobic008G135000 Sobic006G108600--Sobic008G135000 Sobic010G005300 Sobic010G005300 Sobic006G108600--Sobic010G005300 Sobic006G108600--Sobic010G076400 Sobic006G108600--Sobic008G094600 Sobic001G162800 Sobic001G162800 Sobic006G108600--Sobic001G162800 Sobic009G233400 Sobic009G233400 Sobic006G108600--Sobic009G233400 Sobic004G032000 Sobic004G032000 Sobic006G108600--Sobic004G032000
Octagon: transcription factors


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