Gene annotation
Transcriptome id Sobic.004G348100.2,Sobic.004G348100.3
Synonym Sb04g037475
Functional annotation DNL zinc finger domain containing protein, putative, expressed
UniProt C5XVZ0
Pfam PF05180
Panther DB PTHR20922 PTHR20922:SF13
NCBI CDD -
KEGG Orthology K17808; ZIM17, DNLZ, mitochondrial protein import protein ZIM17
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G54826 : Zim17-type zinc finger protein
RAP-DB (Rice) LOC_Os02g57430.1 : DNL zinc finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022625
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G348100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G006300 translationally-controlled tumor protein, putative, expressed -
2 Sobic.009G225200 expressed protein -
3 Sobic.009G117300 protein kinase APK1B, chloroplast precursor, putative, expressed -
4 Sobic.009G133400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
5 Sobic.003G084700 - -
6 Sobic.006G252300 BSD domain-containing protein, putative, expressed -
7 Sobic.006G254700 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
8 Sobic.002G395801 - -
9 Sobic.001G428400 - K12826: SF3A2, splicing factor 3A subunit 2
10 Sobic.001G372000 OsFBT5 - F-box and tubby domain containing protein, expressed -
11 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
12 Sobic.006G209500 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
13 Sobic.009G117400 protein kinase domain containing protein, expressed -
14 Sobic.001G043900 ORC2 - Putative origin recognition complex subunit 2, expressed K02604: origin recognition complex subunit 2
15 Sobic.001G113000 tRNA synthetases class II domain containing protein, expressed K01893: NARS, asparaginyl-tRNA synthetase
16 Sobic.001G031200 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
17 Sobic.009G178600 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
18 Sobic.001G073000 expressed protein K09659: dolichol-phosphate mannosyltransferase subunit 3
19 Sobic.008G062000 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
20 Sobic.002G110700 uncharacterized ACR, YggU family COG1872 containing protein, expressed K09131: uncharacterized protein


Gene co-expression network
sample Sobic004G348100 Sobic004G348100 Sobic004G006300 Sobic004G006300 Sobic004G348100--Sobic004G006300 Sobic009G225200 Sobic009G225200 Sobic004G348100--Sobic009G225200 Sobic009G117300 Sobic009G117300 Sobic004G348100--Sobic009G117300 Sobic009G133400 Sobic009G133400 Sobic004G348100--Sobic009G133400 Sobic003G084700 Sobic003G084700 Sobic004G348100--Sobic003G084700 Sobic006G252300 Sobic006G252300 Sobic004G348100--Sobic006G252300 Sobic006G254700 Sobic006G254700 Sobic004G348100--Sobic006G254700 Sobic002G395801 Sobic002G395801 Sobic004G348100--Sobic002G395801 Sobic001G428400 Sobic001G428400 Sobic004G348100--Sobic001G428400 Sobic009G178600 Sobic009G178600 Sobic004G006300--Sobic009G178600 Sobic004G006300--Sobic009G117300 Sobic004G006300--Sobic006G254700 Sobic006G209500 Sobic006G209500 Sobic004G006300--Sobic006G209500 Sobic004G006300--Sobic004G348100 Sobic004G006300--Sobic001G428400 Sobic009G117400 Sobic009G117400 Sobic004G006300--Sobic009G117400 Sobic001G111366 Sobic001G111366 Sobic004G006300--Sobic001G111366 Sobic001G028700 Sobic001G028700 Sobic004G006300--Sobic001G028700 Sobic009G225200--Sobic009G117300 Sobic009G225200--Sobic009G117400 Sobic005G015100 Sobic005G015100 Sobic009G225200--Sobic005G015100 Sobic001G043900 Sobic001G043900 Sobic009G225200--Sobic001G043900 Sobic003G258900 Sobic003G258900 Sobic009G225200--Sobic003G258900 Sobic004G271900 Sobic004G271900 Sobic009G225200--Sobic004G271900 Sobic009G225200--Sobic004G348100 Sobic003G442000 Sobic003G442000 Sobic009G225200--Sobic003G442000 Sobic009G015800 Sobic009G015800 Sobic009G225200--Sobic009G015800 Sobic009G117300--Sobic009G117400 Sobic009G117300--Sobic004G271900 Sobic009G117300--Sobic009G225200 Sobic010G263800 Sobic010G263800 Sobic009G117300--Sobic010G263800 Sobic004G057400 Sobic004G057400 Sobic009G117300--Sobic004G057400 Sobic008G034600 Sobic008G034600 Sobic009G117300--Sobic008G034600 Sobic009G117300--Sobic006G209500 Sobic004G256600 Sobic004G256600 Sobic009G117300--Sobic004G256600 Sobic007G205800 Sobic007G205800 Sobic009G117300--Sobic007G205800 Sobic004G356900 Sobic004G356900 Sobic009G133400--Sobic004G356900 Sobic006G242300 Sobic006G242300 Sobic009G133400--Sobic006G242300 Sobic010G146600 Sobic010G146600 Sobic009G133400--Sobic010G146600 Sobic009G133400--Sobic004G348100 Sobic004G301900 Sobic004G301900 Sobic009G133400--Sobic004G301900 Sobic010G247400 Sobic010G247400 Sobic009G133400--Sobic010G247400 Sobic010G251100 Sobic010G251100 Sobic009G133400--Sobic010G251100 Sobic001G512600 Sobic001G512600 Sobic009G133400--Sobic001G512600 Sobic007G203700 Sobic007G203700 Sobic009G133400--Sobic007G203700 Sobic001G107500 Sobic001G107500 Sobic003G084700--Sobic001G107500 Sobic007G078600 Sobic007G078600 Sobic003G084700--Sobic007G078600 Sobic009G065100 Sobic009G065100 Sobic003G084700--Sobic009G065100 Sobic003G084700--Sobic004G057400 Sobic008G067600 Sobic008G067600 Sobic003G084700--Sobic008G067600 Sobic001G315100 Sobic001G315100 Sobic003G084700--Sobic001G315100 Sobic001G090400 Sobic001G090400 Sobic003G084700--Sobic001G090400 Sobic003G084700--Sobic004G271900 Sobic009G215800 Sobic009G215800 Sobic003G084700--Sobic009G215800 Sobic001G281600 Sobic001G281600 Sobic006G252300--Sobic001G281600 Sobic002G309800 Sobic002G309800 Sobic006G252300--Sobic002G309800 Sobic007G078500 Sobic007G078500 Sobic006G252300--Sobic007G078500 Sobic004G121100 Sobic004G121100 Sobic006G252300--Sobic004G121100 Sobic004G205600 Sobic004G205600 Sobic006G252300--Sobic004G205600 Sobic008G128600 Sobic008G128600 Sobic006G252300--Sobic008G128600 Sobic006G200600 Sobic006G200600 Sobic006G252300--Sobic006G200600 Sobic008G062000 Sobic008G062000 Sobic006G252300--Sobic008G062000 Sobic006G252300--Sobic003G084700 Sobic002G087900 Sobic002G087900 Sobic006G254700--Sobic002G087900 Sobic006G254700--Sobic004G006300 Sobic006G254700--Sobic006G209500 Sobic006G254700--Sobic002G395801 Sobic003G226500 Sobic003G226500 Sobic006G254700--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic006G254700--Sobic004G253000 Sobic006G254700--Sobic004G348100 Sobic007G186300 Sobic007G186300 Sobic006G254700--Sobic007G186300 Sobic001G478300 Sobic001G478300 Sobic006G254700--Sobic001G478300 Sobic009G259400 Sobic009G259400 Sobic002G395801--Sobic009G259400 Sobic002G395801--Sobic002G087900 Sobic008G179700 Sobic008G179700 Sobic002G395801--Sobic008G179700 Sobic010G018700 Sobic010G018700 Sobic002G395801--Sobic010G018700 Sobic010G083700 Sobic010G083700 Sobic002G395801--Sobic010G083700 Sobic002G010300 Sobic002G010300 Sobic002G395801--Sobic002G010300 Sobic009G205200 Sobic009G205200 Sobic002G395801--Sobic009G205200 Sobic002G132300 Sobic002G132300 Sobic002G395801--Sobic002G132300 Sobic002G395801--Sobic006G254700 Sobic004G077000 Sobic004G077000 Sobic001G428400--Sobic004G077000 Sobic001G428400--Sobic009G117300 Sobic004G211400 Sobic004G211400 Sobic001G428400--Sobic004G211400 Sobic001G039700 Sobic001G039700 Sobic001G428400--Sobic001G039700 Sobic001G428400--Sobic004G006300 Sobic001G428400--Sobic008G034600 Sobic003G043100 Sobic003G043100 Sobic001G428400--Sobic003G043100 Sobic001G428400--Sobic009G117400 Sobic008G136000 Sobic008G136000 Sobic001G428400--Sobic008G136000
Octagon: transcription factors


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