Gene annotation
Transcriptome id Sobic.002G395801.1
Synonym -
Functional annotation -
UniProt A0A1W0W7N7
Pfam PF00240
Panther DB PTHR10666
NCBI CDD KOG4495; RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G57860 : Ubiquitin-like superfamily protein
RAP-DB (Rice) LOC_Os03g24920.1 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048962
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G259400 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
2 Sobic.002G087900 protein phosphatase inhibitor 2 containing protein, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
3 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
4 Sobic.010G018700 H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
5 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
6 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
7 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
8 Sobic.002G132300 Ser/Thr protein phosphatase family protein, putative, expressed K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase
9 Sobic.006G254700 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
10 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
11 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
12 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
13 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
14 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
15 Sobic.004G121100 expressed protein -
16 Sobic.004G348100 DNL zinc finger domain containing protein, putative, expressed K17808: ZIM17, DNLZ, mitochondrial protein import protein ZIM17
17 Sobic.003G084700 - -
18 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
19 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
20 Sobic.009G024200 expressed protein -


Gene co-expression network
sample Sobic002G395801 Sobic002G395801 Sobic009G259400 Sobic009G259400 Sobic002G395801--Sobic009G259400 Sobic002G087900 Sobic002G087900 Sobic002G395801--Sobic002G087900 Sobic008G179700 Sobic008G179700 Sobic002G395801--Sobic008G179700 Sobic010G018700 Sobic010G018700 Sobic002G395801--Sobic010G018700 Sobic010G083700 Sobic010G083700 Sobic002G395801--Sobic010G083700 Sobic002G010300 Sobic002G010300 Sobic002G395801--Sobic002G010300 Sobic009G205200 Sobic009G205200 Sobic002G395801--Sobic009G205200 Sobic002G132300 Sobic002G132300 Sobic002G395801--Sobic002G132300 Sobic006G254700 Sobic006G254700 Sobic002G395801--Sobic006G254700 Sobic004G121100 Sobic004G121100 Sobic009G259400--Sobic004G121100 Sobic009G259400--Sobic002G395801 Sobic003G012200 Sobic003G012200 Sobic009G259400--Sobic003G012200 Sobic009G217100 Sobic009G217100 Sobic009G259400--Sobic009G217100 Sobic003G063000 Sobic003G063000 Sobic009G259400--Sobic003G063000 Sobic010G251000 Sobic010G251000 Sobic009G259400--Sobic010G251000 Sobic006G200600 Sobic006G200600 Sobic009G259400--Sobic006G200600 Sobic001G281600 Sobic001G281600 Sobic009G259400--Sobic001G281600 Sobic009G259400--Sobic008G179700 Sobic002G087900--Sobic002G010300 Sobic002G087900--Sobic002G395801 Sobic002G087900--Sobic010G083700 Sobic002G087900--Sobic006G254700 Sobic004G104900 Sobic004G104900 Sobic002G087900--Sobic004G104900 Sobic002G256300 Sobic002G256300 Sobic002G087900--Sobic002G256300 Sobic002G087900--Sobic009G259400 Sobic003G226500 Sobic003G226500 Sobic002G087900--Sobic003G226500 Sobic002G087900--Sobic010G018700 Sobic002G350300 Sobic002G350300 Sobic008G179700--Sobic002G350300 Sobic003G248200 Sobic003G248200 Sobic008G179700--Sobic003G248200 Sobic008G179700--Sobic001G281600 Sobic001G356600 Sobic001G356600 Sobic008G179700--Sobic001G356600 Sobic009G179700 Sobic009G179700 Sobic008G179700--Sobic009G179700 Sobic004G084300 Sobic004G084300 Sobic008G179700--Sobic004G084300 Sobic003G401100 Sobic003G401100 Sobic008G179700--Sobic003G401100 Sobic002G126500 Sobic002G126500 Sobic008G179700--Sobic002G126500 Sobic001G512700 Sobic001G512700 Sobic008G179700--Sobic001G512700 Sobic010G018700--Sobic001G356600 Sobic010G018700--Sobic009G179700 Sobic010G027600 Sobic010G027600 Sobic010G018700--Sobic010G027600 Sobic010G018700--Sobic004G104900 Sobic003G439800 Sobic003G439800 Sobic010G018700--Sobic003G439800 Sobic009G058500 Sobic009G058500 Sobic010G018700--Sobic009G058500 Sobic004G141700 Sobic004G141700 Sobic010G018700--Sobic004G141700 Sobic010G193800 Sobic010G193800 Sobic010G018700--Sobic010G193800 Sobic004G066200 Sobic004G066200 Sobic010G018700--Sobic004G066200 Sobic006G263900 Sobic006G263900 Sobic010G083700--Sobic006G263900 Sobic010G168600 Sobic010G168600 Sobic010G083700--Sobic010G168600 Sobic001G054200 Sobic001G054200 Sobic010G083700--Sobic001G054200 Sobic001G007200 Sobic001G007200 Sobic010G083700--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G253800 Sobic010G253800 Sobic010G083700--Sobic010G253800 Sobic010G083700--Sobic002G256300 Sobic003G007500 Sobic003G007500 Sobic010G083700--Sobic003G007500 Sobic007G026300 Sobic007G026300 Sobic002G010300--Sobic007G026300 Sobic001G090400 Sobic001G090400 Sobic002G010300--Sobic001G090400 Sobic004G350100 Sobic004G350100 Sobic002G010300--Sobic004G350100 Sobic009G198100 Sobic009G198100 Sobic002G010300--Sobic009G198100 Sobic004G021100 Sobic004G021100 Sobic002G010300--Sobic004G021100 Sobic003G081000 Sobic003G081000 Sobic002G010300--Sobic003G081000 Sobic006G173100 Sobic006G173100 Sobic002G010300--Sobic006G173100 Sobic002G010300--Sobic001G356600 Sobic002G200100 Sobic002G200100 Sobic002G010300--Sobic002G200100 Sobic009G205200--Sobic004G121100 Sobic001G107500 Sobic001G107500 Sobic009G205200--Sobic001G107500 Sobic009G205200--Sobic002G350300 Sobic007G104800 Sobic007G104800 Sobic009G205200--Sobic007G104800 Sobic009G205200--Sobic006G200600 Sobic003G345400 Sobic003G345400 Sobic009G205200--Sobic003G345400 Sobic001G119300 Sobic001G119300 Sobic009G205200--Sobic001G119300 Sobic009G205200--Sobic003G248200 Sobic009G205200--Sobic008G179700 Sobic002G378200 Sobic002G378200 Sobic002G132300--Sobic002G378200 Sobic009G054700 Sobic009G054700 Sobic002G132300--Sobic009G054700 Sobic004G007300 Sobic004G007300 Sobic002G132300--Sobic004G007300 Sobic001G028400 Sobic001G028400 Sobic002G132300--Sobic001G028400 Sobic002G084300 Sobic002G084300 Sobic002G132300--Sobic002G084300 Sobic004G263900 Sobic004G263900 Sobic002G132300--Sobic004G263900 Sobic001G512900 Sobic001G512900 Sobic002G132300--Sobic001G512900 Sobic008G174300 Sobic008G174300 Sobic002G132300--Sobic008G174300 Sobic010G033400 Sobic010G033400 Sobic002G132300--Sobic010G033400 Sobic006G254700--Sobic002G087900 Sobic004G006300 Sobic004G006300 Sobic006G254700--Sobic004G006300 Sobic006G209500 Sobic006G209500 Sobic006G254700--Sobic006G209500 Sobic006G254700--Sobic002G395801 Sobic006G254700--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic006G254700--Sobic004G253000 Sobic004G348100 Sobic004G348100 Sobic006G254700--Sobic004G348100 Sobic007G186300 Sobic007G186300 Sobic006G254700--Sobic007G186300 Sobic001G478300 Sobic001G478300 Sobic006G254700--Sobic001G478300
Octagon: transcription factors


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