Gene annotation
Transcriptome id Sobic.009G024200.1
Synonym Sb09g002040
Functional annotation expressed protein
UniProt C5YZ17
Pfam PF06749
Panther DB PTHR31769 PTHR31769:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G31130 : Protein of unknown function (DUF1218)
RAP-DB (Rice) LOC_Os05g02990.1 : expressed protein
MaizeGDB (Corn) Zm00025a040775
Brachypodium KQK07813
Barley HORVU1Hr1G010940.3 , HORVU1Hr1G010940.2 , HORVU1Hr1G010940.1 , HORVU1Hr1G010940.5 , HORVU1Hr1G010940.4
Wheat TraesCS1A02G055200 , TraesCS1B02G072000 , TraesCS1D02G055900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G024200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
2 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
3 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
4 Sobic.001G330000 hydrolase, alpha/beta fold family domain containing protein, expressed -
5 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
6 Sobic.002G395801 - -
7 Sobic.001G054200 green ripe-like, putative, expressed -
8 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
9 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
10 Sobic.001G078500 expressed protein -
11 Sobic.001G073000 expressed protein K09659: dolichol-phosphate mannosyltransferase subunit 3
12 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
13 Sobic.002G134001 - K14490: histidine-containing phosphotransfer peotein
14 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
15 Sobic.009G171700 SAG20, putative, expressed -
16 Sobic.010G000900 spotted leaf 11, putative, expressed -
17 Sobic.002G087900 protein phosphatase inhibitor 2 containing protein, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
18 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
19 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
20 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4


Gene co-expression network
sample Sobic009G024200 Sobic009G024200 Sobic010G083700 Sobic010G083700 Sobic009G024200--Sobic010G083700 Sobic007G186300 Sobic007G186300 Sobic009G024200--Sobic007G186300 Sobic010G168600 Sobic010G168600 Sobic009G024200--Sobic010G168600 Sobic001G330000 Sobic001G330000 Sobic009G024200--Sobic001G330000 Sobic001G007200 Sobic001G007200 Sobic009G024200--Sobic001G007200 Sobic002G395801 Sobic002G395801 Sobic009G024200--Sobic002G395801 Sobic001G054200 Sobic001G054200 Sobic009G024200--Sobic001G054200 Sobic003G007500 Sobic003G007500 Sobic009G024200--Sobic003G007500 Sobic009G135600 Sobic009G135600 Sobic009G024200--Sobic009G135600 Sobic006G263900 Sobic006G263900 Sobic010G083700--Sobic006G263900 Sobic010G083700--Sobic010G168600 Sobic010G083700--Sobic001G054200 Sobic010G083700--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G253800 Sobic010G253800 Sobic010G083700--Sobic010G253800 Sobic002G256300 Sobic002G256300 Sobic010G083700--Sobic002G256300 Sobic010G083700--Sobic003G007500 Sobic007G186300--Sobic003G007500 Sobic007G186300--Sobic001G054200 Sobic003G115800 Sobic003G115800 Sobic007G186300--Sobic003G115800 Sobic003G248600 Sobic003G248600 Sobic007G186300--Sobic003G248600 Sobic007G186300--Sobic001G007200 Sobic007G186300--Sobic009G246950 Sobic007G186300--Sobic010G083700 Sobic009G146100 Sobic009G146100 Sobic007G186300--Sobic009G146100 Sobic009G152200 Sobic009G152200 Sobic007G186300--Sobic009G152200 Sobic010G168600--Sobic010G083700 Sobic001G078500 Sobic001G078500 Sobic010G168600--Sobic001G078500 Sobic010G168600--Sobic009G246950 Sobic002G352700 Sobic002G352700 Sobic010G168600--Sobic002G352700 Sobic010G168600--Sobic006G263900 Sobic010G168600--Sobic003G007500 Sobic009G171700 Sobic009G171700 Sobic010G168600--Sobic009G171700 Sobic010G168600--Sobic002G256300 Sobic004G104900 Sobic004G104900 Sobic010G168600--Sobic004G104900 Sobic001G294000 Sobic001G294000 Sobic001G330000--Sobic001G294000 Sobic004G172700 Sobic004G172700 Sobic001G330000--Sobic004G172700 Sobic001G330000--Sobic007G186300 Sobic001G371300 Sobic001G371300 Sobic001G330000--Sobic001G371300 Sobic001G330000--Sobic009G024200 Sobic001G330000--Sobic010G168600 Sobic001G330000--Sobic001G078500 Sobic003G273100 Sobic003G273100 Sobic001G330000--Sobic003G273100 Sobic001G330000--Sobic010G083700 Sobic001G007200--Sobic010G083700 Sobic001G415500 Sobic001G415500 Sobic001G007200--Sobic001G415500 Sobic001G007200--Sobic007G186300 Sobic001G007200--Sobic010G253800 Sobic004G086600 Sobic004G086600 Sobic001G007200--Sobic004G086600 Sobic001G073000 Sobic001G073000 Sobic001G007200--Sobic001G073000 Sobic001G007200--Sobic009G246950 Sobic004G141700 Sobic004G141700 Sobic001G007200--Sobic004G141700 Sobic001G007200--Sobic009G146100 Sobic009G259400 Sobic009G259400 Sobic002G395801--Sobic009G259400 Sobic002G087900 Sobic002G087900 Sobic002G395801--Sobic002G087900 Sobic008G179700 Sobic008G179700 Sobic002G395801--Sobic008G179700 Sobic010G018700 Sobic010G018700 Sobic002G395801--Sobic010G018700 Sobic002G395801--Sobic010G083700 Sobic002G010300 Sobic002G010300 Sobic002G395801--Sobic002G010300 Sobic009G205200 Sobic009G205200 Sobic002G395801--Sobic009G205200 Sobic002G132300 Sobic002G132300 Sobic002G395801--Sobic002G132300 Sobic006G254700 Sobic006G254700 Sobic002G395801--Sobic006G254700 Sobic001G054200--Sobic010G083700 Sobic001G054200--Sobic006G263900 Sobic006G212100 Sobic006G212100 Sobic001G054200--Sobic006G212100 Sobic001G054200--Sobic007G186300 Sobic001G054200--Sobic004G293700 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic006G232200 Sobic006G232200 Sobic001G054200--Sobic006G232200 Sobic001G054200--Sobic003G115800 Sobic003G007500--Sobic007G186300 Sobic003G007500--Sobic010G083700 Sobic003G007500--Sobic010G168600 Sobic003G007500--Sobic001G078500 Sobic003G295400 Sobic003G295400 Sobic003G007500--Sobic003G295400 Sobic001G051200 Sobic001G051200 Sobic003G007500--Sobic001G051200 Sobic004G072800 Sobic004G072800 Sobic003G007500--Sobic004G072800 Sobic003G007500--Sobic004G104900 Sobic002G281300 Sobic002G281300 Sobic003G007500--Sobic002G281300 Sobic001G461900 Sobic001G461900 Sobic009G135600--Sobic001G461900 Sobic003G349300 Sobic003G349300 Sobic009G135600--Sobic003G349300 Sobic009G135600--Sobic009G146100 Sobic001G433400 Sobic001G433400 Sobic009G135600--Sobic001G433400 Sobic002G385900 Sobic002G385900 Sobic009G135600--Sobic002G385900 Sobic001G388200 Sobic001G388200 Sobic009G135600--Sobic001G388200 Sobic002G400000 Sobic002G400000 Sobic009G135600--Sobic002G400000 Sobic001G294900 Sobic001G294900 Sobic009G135600--Sobic001G294900 Sobic009G135600--Sobic001G054200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.