Gene annotation
Transcriptome id Sobic.001G113000.1
Synonym Sb01g010060, SYNC1ARATH, EMB2755, SYNC1
Functional annotation tRNA synthetases class II domain containing protein, expressed
UniProt C5WN03
Pfam PF01336 PF00152
Panther DB PTHR22594 PTHR22594:SF34
NCBI CDD -
KEGG Orthology K01893; NARS, asparaginyl-tRNA synthetase
Gene Ontology GO:0003676; nucleic acid binding GO:0006418tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT5G56680 : Class II aminoacyl-tRNA and biotin synthetases superfamily protein
RAP-DB (Rice) LOC_Os01g27520.1 : tRNA synthetases class II domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036277
Brachypodium KQK07517
Barley HORVU1Hr1G021130.2 , HORVU1Hr1G021130.3 , HORVU1Hr1G021130.1 , HORVU1Hr1G021130.4
Wheat TraesCS1D02G094600 , TraesCS1A02G102600 , TraesCS1B02G113400
Populus PNS93113 , PNS93115 , PNS93114 , PNS93117 , PNS93116


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cDNA sequences
Sobic.001G113000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G110700 uncharacterized ACR, YggU family COG1872 containing protein, expressed K09131: uncharacterized protein
2 Sobic.002G352600 expressed protein -
3 Sobic.001G358000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
4 Sobic.004G121100 expressed protein -
5 Sobic.010G027600 transcription factor TFIIF, putative, expressed K11341: YEATS4, GAS41, YEATS domain-containing protein 4
6 Sobic.004G348100 DNL zinc finger domain containing protein, putative, expressed K17808: ZIM17, DNLZ, mitochondrial protein import protein ZIM17
7 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
8 Sobic.007G058700 chaperonin, putative, expressed -
9 Sobic.002G178601 - -
10 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
11 Sobic.003G370900 expressed protein -
12 Sobic.001G181700 expressed protein -
13 Sobic.004G164400 expressed protein -
14 Sobic.004G235000 methyltransferase, putative, expressed K10770: ALKBH8, alkylated DNA repair protein alkB homolog 8
15 Sobic.009G179700 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
16 Sobic.003G176600 expressed protein -
17 Sobic.002G104100 FYVE zinc finger domain containing protein, expressed -
18 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
19 Sobic.010G262000 tRNA-dihydrouridine synthase, putative, expressed K05542: tRNA-dihydrouridine synthase 1
20 Sobic.003G344900 selT-like protein precursor, putative, expressed -


Gene co-expression network
sample Sobic001G113000 Sobic001G113000 Sobic002G110700 Sobic002G110700 Sobic001G113000--Sobic002G110700 Sobic002G352600 Sobic002G352600 Sobic001G113000--Sobic002G352600 Sobic001G358000 Sobic001G358000 Sobic001G113000--Sobic001G358000 Sobic004G121100 Sobic004G121100 Sobic001G113000--Sobic004G121100 Sobic010G027600 Sobic010G027600 Sobic001G113000--Sobic010G027600 Sobic004G348100 Sobic004G348100 Sobic001G113000--Sobic004G348100 Sobic001G080700 Sobic001G080700 Sobic001G113000--Sobic001G080700 Sobic007G058700 Sobic007G058700 Sobic001G113000--Sobic007G058700 Sobic002G178601 Sobic002G178601 Sobic001G113000--Sobic002G178601 Sobic009G165800 Sobic009G165800 Sobic002G110700--Sobic009G165800 Sobic002G110700--Sobic010G027600 Sobic002G110700--Sobic004G121100 Sobic010G184100 Sobic010G184100 Sobic002G110700--Sobic010G184100 Sobic002G110700--Sobic001G080700 Sobic007G078500 Sobic007G078500 Sobic002G110700--Sobic007G078500 Sobic007G166100 Sobic007G166100 Sobic002G110700--Sobic007G166100 Sobic003G250500 Sobic003G250500 Sobic002G110700--Sobic003G250500 Sobic002G113900 Sobic002G113900 Sobic002G110700--Sobic002G113900 Sobic003G015900 Sobic003G015900 Sobic002G352600--Sobic003G015900 Sobic002G352600--Sobic010G027600 Sobic009G228700 Sobic009G228700 Sobic002G352600--Sobic009G228700 Sobic002G352600--Sobic004G121100 Sobic009G217100 Sobic009G217100 Sobic002G352600--Sobic009G217100 Sobic001G121200 Sobic001G121200 Sobic002G352600--Sobic001G121200 Sobic010G000900 Sobic010G000900 Sobic002G352600--Sobic010G000900 Sobic004G066200 Sobic004G066200 Sobic002G352600--Sobic004G066200 Sobic003G248200 Sobic003G248200 Sobic002G352600--Sobic003G248200 Sobic001G358000--Sobic009G165800 Sobic004G353200 Sobic004G353200 Sobic001G358000--Sobic004G353200 Sobic004G146800 Sobic004G146800 Sobic001G358000--Sobic004G146800 Sobic010G223700 Sobic010G223700 Sobic001G358000--Sobic010G223700 Sobic001G358000--Sobic004G121100 Sobic001G358000--Sobic001G113000 Sobic001G358000--Sobic001G080700 Sobic006G200600 Sobic006G200600 Sobic001G358000--Sobic006G200600 Sobic007G019800 Sobic007G019800 Sobic001G358000--Sobic007G019800 Sobic009G205200 Sobic009G205200 Sobic004G121100--Sobic009G205200 Sobic004G121100--Sobic006G200600 Sobic006G228500 Sobic006G228500 Sobic004G121100--Sobic006G228500 Sobic001G281600 Sobic001G281600 Sobic004G121100--Sobic001G281600 Sobic009G259400 Sobic009G259400 Sobic004G121100--Sobic009G259400 Sobic004G121100--Sobic007G078500 Sobic004G121100--Sobic001G080700 Sobic002G350300 Sobic002G350300 Sobic004G121100--Sobic002G350300 Sobic010G251000 Sobic010G251000 Sobic004G121100--Sobic010G251000 Sobic010G018700 Sobic010G018700 Sobic010G027600--Sobic010G018700 Sobic010G027600--Sobic004G066200 Sobic009G222500 Sobic009G222500 Sobic010G027600--Sobic009G222500 Sobic010G027600--Sobic002G352600 Sobic009G179700 Sobic009G179700 Sobic010G027600--Sobic009G179700 Sobic010G027600--Sobic002G110700 Sobic002G192200 Sobic002G192200 Sobic010G027600--Sobic002G192200 Sobic010G027600--Sobic009G228700 Sobic006G049700 Sobic006G049700 Sobic010G027600--Sobic006G049700 Sobic004G006300 Sobic004G006300 Sobic004G348100--Sobic004G006300 Sobic009G225200 Sobic009G225200 Sobic004G348100--Sobic009G225200 Sobic009G117300 Sobic009G117300 Sobic004G348100--Sobic009G117300 Sobic009G133400 Sobic009G133400 Sobic004G348100--Sobic009G133400 Sobic003G084700 Sobic003G084700 Sobic004G348100--Sobic003G084700 Sobic006G252300 Sobic006G252300 Sobic004G348100--Sobic006G252300 Sobic006G254700 Sobic006G254700 Sobic004G348100--Sobic006G254700 Sobic002G395801 Sobic002G395801 Sobic004G348100--Sobic002G395801 Sobic001G428400 Sobic001G428400 Sobic004G348100--Sobic001G428400 Sobic001G392300 Sobic001G392300 Sobic001G080700--Sobic001G392300 Sobic001G080700--Sobic009G165800 Sobic001G080700--Sobic010G251000 Sobic001G080700--Sobic004G066200 Sobic003G264200 Sobic003G264200 Sobic001G080700--Sobic003G264200 Sobic001G080700--Sobic009G222500 Sobic006G101700 Sobic006G101700 Sobic001G080700--Sobic006G101700 Sobic001G332500 Sobic001G332500 Sobic001G080700--Sobic001G332500 Sobic001G007000 Sobic001G007000 Sobic001G080700--Sobic001G007000 Sobic003G370900 Sobic003G370900 Sobic007G058700--Sobic003G370900 Sobic001G181700 Sobic001G181700 Sobic007G058700--Sobic001G181700 Sobic007G058700--Sobic001G113000 Sobic007G058700--Sobic009G165800 Sobic007G058700--Sobic001G080700 Sobic001G479100 Sobic001G479100 Sobic007G058700--Sobic001G479100 Sobic007G058700--Sobic004G121100 Sobic007G058700--Sobic009G222500 Sobic002G047333 Sobic002G047333 Sobic007G058700--Sobic002G047333 Sobic002G393500 Sobic002G393500 Sobic002G178601--Sobic002G393500 Sobic008G133600 Sobic008G133600 Sobic002G178601--Sobic008G133600 Sobic003G344900 Sobic003G344900 Sobic002G178601--Sobic003G344900 Sobic003G239800 Sobic003G239800 Sobic002G178601--Sobic003G239800 Sobic009G228800 Sobic009G228800 Sobic002G178601--Sobic009G228800 Sobic002G178601--Sobic003G015900 Sobic002G178601--Sobic001G113000 Sobic004G235000 Sobic004G235000 Sobic002G178601--Sobic004G235000 Sobic002G430800 Sobic002G430800 Sobic002G178601--Sobic002G430800
Octagon: transcription factors


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