Gene annotation
Transcriptome id Sobic.001G539016.1
Synonym -
Functional annotation -
UniProt A0A1B6QR73
Pfam PF10358
Panther DB PTHR13140 PTHR13140:SF402
NCBI CDD KOG0971; Microtubule-associated protein dynactin DCTN1/Glued KOG0978E3 ubiquitin ligase involved in syntaxin degradation KOG0018Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) KOG4593Mitotic checkpoint protein MAD1 KOG0933Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G52280 : Myosin heavy chain-related protein
RAP-DB (Rice) LOC_Os03g01710.1 : expressed protein
MaizeGDB (Corn) Zm00025a053569 , Zm00025a052040 , Zm00025a000145 , Zm00025a045677
Brachypodium PNT67836 , KQK24089 , KQK24088
Barley -
Wheat TraesCS4B02G361700 , TraesCS4D02G354700 , TraesCS5A02G529700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
2 Sobic.003G293200 plus-3 domain containing protein, expressed -
3 Sobic.009G005100 - -
4 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
5 Sobic.010G223100 PAP/25A associated domain containing protein, putative, expressed -
6 Sobic.001G334700 OsWAK28 - OsWAK receptor-like protein kinase, expressed -
7 Sobic.003G445500 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
8 Sobic.001G102700 metalloendopeptidase/ metallopeptidase/ zinc ion binding protein, putative, expressed K01404: leishmanolysin
9 Sobic.001G287500 heat shock protein DnaJ, putative, expressed K09533: DnaJ homolog subfamily C member 13
10 Sobic.004G023100 protein binding protein, putative, expressed -
11 Sobic.002G313400 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12815: DHX38, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16
12 Sobic.001G026500 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL6 - SBP-box gene family member, expressed -
13 Sobic.001G426600 SH3 domain containing protein, expressed -
14 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
15 Sobic.001G518400 EF hand family protein, putative, expressed -
16 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
17 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.001G111600 expressed protein -
19 Sobic.010G275500 EF hand family protein, putative, expressed -
20 Sobic.004G204100 expressed protein -


Gene co-expression network
sample Sobic001G539016 Sobic001G539016 Sobic001G352900 Sobic001G352900 Sobic001G539016--Sobic001G352900 Sobic003G293200 Sobic003G293200 Sobic001G539016--Sobic003G293200 Sobic009G005100 Sobic009G005100 Sobic001G539016--Sobic009G005100 Sobic004G260100 Sobic004G260100 Sobic001G539016--Sobic004G260100 Sobic010G223100 Sobic010G223100 Sobic001G539016--Sobic010G223100 Sobic001G334700 Sobic001G334700 Sobic001G539016--Sobic001G334700 Sobic003G445500 Sobic003G445500 Sobic001G539016--Sobic003G445500 Sobic001G102700 Sobic001G102700 Sobic001G539016--Sobic001G102700 Sobic001G287500 Sobic001G287500 Sobic001G539016--Sobic001G287500 Sobic010G053600 Sobic010G053600 Sobic001G352900--Sobic010G053600 Sobic002G391600 Sobic002G391600 Sobic001G352900--Sobic002G391600 Sobic004G242400 Sobic004G242400 Sobic001G352900--Sobic004G242400 Sobic010G001100 Sobic010G001100 Sobic001G352900--Sobic010G001100 Sobic009G109200 Sobic009G109200 Sobic001G352900--Sobic009G109200 Sobic002G317200 Sobic002G317200 Sobic001G352900--Sobic002G317200 Sobic002G397500 Sobic002G397500 Sobic001G352900--Sobic002G397500 Sobic001G219600 Sobic001G219600 Sobic001G352900--Sobic001G219600 Sobic001G352900--Sobic003G293200 Sobic003G293200--Sobic010G001100 Sobic009G166100 Sobic009G166100 Sobic003G293200--Sobic009G166100 Sobic005G128400 Sobic005G128400 Sobic003G293200--Sobic005G128400 Sobic004G009600 Sobic004G009600 Sobic003G293200--Sobic004G009600 Sobic010G065300 Sobic010G065300 Sobic003G293200--Sobic010G065300 Sobic004G264300 Sobic004G264300 Sobic003G293200--Sobic004G264300 Sobic007G031600 Sobic007G031600 Sobic003G293200--Sobic007G031600 Sobic007G117400 Sobic007G117400 Sobic003G293200--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic003G293200--Sobic001G111600 Sobic002G158700 Sobic002G158700 Sobic009G005100--Sobic002G158700 Sobic002G396000 Sobic002G396000 Sobic009G005100--Sobic002G396000 Sobic001G542700 Sobic001G542700 Sobic009G005100--Sobic001G542700 Sobic007G061700 Sobic007G061700 Sobic009G005100--Sobic007G061700 Sobic006G209850 Sobic006G209850 Sobic009G005100--Sobic006G209850 Sobic009G005100--Sobic001G219600 Sobic003G401000 Sobic003G401000 Sobic009G005100--Sobic003G401000 Sobic009G005100--Sobic001G539016 Sobic001G167200 Sobic001G167200 Sobic009G005100--Sobic001G167200 Sobic001G214600 Sobic001G214600 Sobic004G260100--Sobic001G214600 Sobic009G084900 Sobic009G084900 Sobic004G260100--Sobic009G084900 Sobic004G260100--Sobic002G397500 Sobic001G089600 Sobic001G089600 Sobic004G260100--Sobic001G089600 Sobic001G493200 Sobic001G493200 Sobic004G260100--Sobic001G493200 Sobic004G260100--Sobic001G334700 Sobic010G147833 Sobic010G147833 Sobic004G260100--Sobic010G147833 Sobic004G023100 Sobic004G023100 Sobic004G260100--Sobic004G023100 Sobic004G260100--Sobic010G053600 Sobic004G204100 Sobic004G204100 Sobic010G223100--Sobic004G204100 Sobic004G322400 Sobic004G322400 Sobic010G223100--Sobic004G322400 Sobic010G275500 Sobic010G275500 Sobic010G223100--Sobic010G275500 Sobic010G223100--Sobic009G084900 Sobic010G223100--Sobic004G023100 Sobic010G223100--Sobic001G287500 Sobic003G072200 Sobic003G072200 Sobic010G223100--Sobic003G072200 Sobic003G189600 Sobic003G189600 Sobic010G223100--Sobic003G189600 Sobic010G185400 Sobic010G185400 Sobic010G223100--Sobic010G185400 Sobic001G334700--Sobic004G260100 Sobic001G334700--Sobic002G397500 Sobic003G014500 Sobic003G014500 Sobic001G334700--Sobic003G014500 Sobic001G280900 Sobic001G280900 Sobic001G334700--Sobic001G280900 Sobic002G362800 Sobic002G362800 Sobic001G334700--Sobic002G362800 Sobic003G164200 Sobic003G164200 Sobic001G334700--Sobic003G164200 Sobic008G150700 Sobic008G150700 Sobic001G334700--Sobic008G150700 Sobic007G220300 Sobic007G220300 Sobic001G334700--Sobic007G220300 Sobic006G040800 Sobic006G040800 Sobic001G334700--Sobic006G040800 Sobic003G445500--Sobic001G111600 Sobic003G445500--Sobic001G352900 Sobic003G445500--Sobic009G109200 Sobic003G445500--Sobic005G128400 Sobic003G445500--Sobic003G293200 Sobic005G191900 Sobic005G191900 Sobic003G445500--Sobic005G191900 Sobic003G445500--Sobic002G397500 Sobic003G294600 Sobic003G294600 Sobic003G445500--Sobic003G294600 Sobic003G445500--Sobic010G053600 Sobic001G026500 Sobic001G026500 Sobic001G102700--Sobic001G026500 Sobic001G102700--Sobic001G111600 Sobic001G362200 Sobic001G362200 Sobic001G102700--Sobic001G362200 Sobic002G313400 Sobic002G313400 Sobic001G102700--Sobic002G313400 Sobic001G102700--Sobic010G275500 Sobic008G118200 Sobic008G118200 Sobic001G102700--Sobic008G118200 Sobic001G094900 Sobic001G094900 Sobic001G102700--Sobic001G094900 Sobic005G220000 Sobic005G220000 Sobic001G102700--Sobic005G220000 Sobic001G102700--Sobic005G128400 Sobic003G233400 Sobic003G233400 Sobic001G287500--Sobic003G233400 Sobic001G287500--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic001G287500--Sobic007G098500 Sobic004G051200 Sobic004G051200 Sobic001G287500--Sobic004G051200 Sobic008G092600 Sobic008G092600 Sobic001G287500--Sobic008G092600 Sobic001G347500 Sobic001G347500 Sobic001G287500--Sobic001G347500 Sobic001G426600 Sobic001G426600 Sobic001G287500--Sobic001G426600 Sobic004G040500 Sobic004G040500 Sobic001G287500--Sobic004G040500 Sobic001G287500--Sobic004G204100
Octagon: transcription factors


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