Gene annotation
Transcriptome id Sobic.001G026500.1
Synonym Sb01g002530, SbSBP1, SPL12
Functional annotation Highest expression level in primordial inflorescence (PubMedID : 27501690)
OsSPL6 - SBP-box gene family member, expressed
UniProt C5WU18
Pfam PF12796 PF03110
Panther DB PTHR31251 PTHR31251:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G60030 : squamosa promoter-binding protein-like 12
RAP-DB (Rice) LOC_Os03g61760.1 : OsSPL6 - SBP-box gene family member, expressed
MaizeGDB (Corn) Zm00025a008902 , Zm00025a016389
Brachypodium KQK12296
Barley HORVU5Hr1G117190.6 , HORVU5Hr1G117190.4 , HORVU5Hr1G117190.5 , HORVU5Hr1G117190.2 , HORVU5Hr1G117190.3 , HORVU5Hr1G117190.1
Wheat TraesCS5B02G512800 , TraesCS5B02G512800 , TraesCS5D02G513300 , TraesCS4A02G359500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G362800 formin-like protein 20, putative, expressed K02184: formin 2
2 Sobic.003G293200 plus-3 domain containing protein, expressed -
3 Sobic.006G118700 MYB family transcription factor, putative, expressed -
4 Sobic.001G111600 expressed protein -
5 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
6 Sobic.001G102700 metalloendopeptidase/ metallopeptidase/ zinc ion binding protein, putative, expressed K01404: leishmanolysin
7 Sobic.005G128400 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
8 Sobic.007G183900 ubiquitin family protein, putative, expressed -
9 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
10 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
11 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
12 Sobic.002G391600 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K12854: SNRNP200, pre-mRNA-splicing helicase BRR2
13 Sobic.007G117400 expressed protein -
14 Sobic.010G069100 expressed protein -
15 Sobic.001G063700 expressed protein -
16 Sobic.002G313400 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12815: DHX38, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16
17 Sobic.007G054400 FAR1 family protein, expressed -
18 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
19 Sobic.004G158400 AML1, putative, expressed -
20 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus


Gene co-expression network
sample Sobic001G026500 Sobic001G026500 Sobic002G362800 Sobic002G362800 Sobic001G026500--Sobic002G362800 Sobic003G293200 Sobic003G293200 Sobic001G026500--Sobic003G293200 Sobic006G118700 Sobic006G118700 Sobic001G026500--Sobic006G118700 Sobic001G111600 Sobic001G111600 Sobic001G026500--Sobic001G111600 Sobic010G112100 Sobic010G112100 Sobic001G026500--Sobic010G112100 Sobic001G102700 Sobic001G102700 Sobic001G026500--Sobic001G102700 Sobic005G128400 Sobic005G128400 Sobic001G026500--Sobic005G128400 Sobic007G183900 Sobic007G183900 Sobic001G026500--Sobic007G183900 Sobic005G220000 Sobic005G220000 Sobic001G026500--Sobic005G220000 Sobic002G362800--Sobic001G026500 Sobic002G362800--Sobic010G112100 Sobic002G362800--Sobic001G111600 Sobic001G063700 Sobic001G063700 Sobic002G362800--Sobic001G063700 Sobic002G154000 Sobic002G154000 Sobic002G362800--Sobic002G154000 Sobic002G362800--Sobic003G293200 Sobic003G360400 Sobic003G360400 Sobic002G362800--Sobic003G360400 Sobic007G168300 Sobic007G168300 Sobic002G362800--Sobic007G168300 Sobic008G009700 Sobic008G009700 Sobic002G362800--Sobic008G009700 Sobic010G001100 Sobic010G001100 Sobic003G293200--Sobic010G001100 Sobic009G166100 Sobic009G166100 Sobic003G293200--Sobic009G166100 Sobic003G293200--Sobic005G128400 Sobic004G009600 Sobic004G009600 Sobic003G293200--Sobic004G009600 Sobic010G065300 Sobic010G065300 Sobic003G293200--Sobic010G065300 Sobic004G264300 Sobic004G264300 Sobic003G293200--Sobic004G264300 Sobic007G031600 Sobic007G031600 Sobic003G293200--Sobic007G031600 Sobic007G117400 Sobic007G117400 Sobic003G293200--Sobic007G117400 Sobic003G293200--Sobic001G111600 Sobic006G118700--Sobic007G183900 Sobic002G264200 Sobic002G264200 Sobic006G118700--Sobic002G264200 Sobic006G118700--Sobic010G112100 Sobic006G118700--Sobic003G360400 Sobic004G355800 Sobic004G355800 Sobic006G118700--Sobic004G355800 Sobic010G069100 Sobic010G069100 Sobic006G118700--Sobic010G069100 Sobic002G366400 Sobic002G366400 Sobic006G118700--Sobic002G366400 Sobic010G236400 Sobic010G236400 Sobic006G118700--Sobic010G236400 Sobic007G091600 Sobic007G091600 Sobic006G118700--Sobic007G091600 Sobic002G068100 Sobic002G068100 Sobic001G111600--Sobic002G068100 Sobic001G111600--Sobic003G293200 Sobic001G111600--Sobic005G128400 Sobic001G354600 Sobic001G354600 Sobic001G111600--Sobic001G354600 Sobic001G457900 Sobic001G457900 Sobic001G111600--Sobic001G457900 Sobic001G111600--Sobic010G112100 Sobic010G275500 Sobic010G275500 Sobic001G111600--Sobic010G275500 Sobic001G111600--Sobic005G220000 Sobic001G111600--Sobic002G362800 Sobic010G112100--Sobic003G360400 Sobic005G112300 Sobic005G112300 Sobic010G112100--Sobic005G112300 Sobic009G256300 Sobic009G256300 Sobic010G112100--Sobic009G256300 Sobic003G408600 Sobic003G408600 Sobic010G112100--Sobic003G408600 Sobic001G433800 Sobic001G433800 Sobic010G112100--Sobic001G433800 Sobic001G540400 Sobic001G540400 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic004G242400 Sobic004G242400 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200 Sobic001G102700--Sobic001G026500 Sobic001G102700--Sobic001G111600 Sobic001G362200 Sobic001G362200 Sobic001G102700--Sobic001G362200 Sobic002G313400 Sobic002G313400 Sobic001G102700--Sobic002G313400 Sobic001G102700--Sobic010G275500 Sobic008G118200 Sobic008G118200 Sobic001G102700--Sobic008G118200 Sobic001G094900 Sobic001G094900 Sobic001G102700--Sobic001G094900 Sobic001G102700--Sobic005G220000 Sobic001G102700--Sobic005G128400 Sobic005G128400--Sobic003G293200 Sobic003G266001 Sobic003G266001 Sobic005G128400--Sobic003G266001 Sobic001G154900 Sobic001G154900 Sobic005G128400--Sobic001G154900 Sobic001G016600 Sobic001G016600 Sobic005G128400--Sobic001G016600 Sobic001G241200 Sobic001G241200 Sobic005G128400--Sobic001G241200 Sobic007G105100 Sobic007G105100 Sobic005G128400--Sobic007G105100 Sobic005G128400--Sobic010G069100 Sobic005G128400--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic005G128400--Sobic005G008800 Sobic003G416700 Sobic003G416700 Sobic007G183900--Sobic003G416700 Sobic007G183900--Sobic006G118700 Sobic007G183900--Sobic003G360400 Sobic007G183900--Sobic010G236400 Sobic009G044800 Sobic009G044800 Sobic007G183900--Sobic009G044800 Sobic007G183900--Sobic010G069100 Sobic007G183900--Sobic010G275500 Sobic007G183900--Sobic001G354600 Sobic007G183900--Sobic002G264200 Sobic005G220000--Sobic001G111600 Sobic002G145800 Sobic002G145800 Sobic005G220000--Sobic002G145800 Sobic005G220000--Sobic007G183900 Sobic005G220000--Sobic005G128400 Sobic005G220000--Sobic003G293200 Sobic007G183300 Sobic007G183300 Sobic005G220000--Sobic007G183300 Sobic003G062300 Sobic003G062300 Sobic005G220000--Sobic003G062300 Sobic010G085200 Sobic010G085200 Sobic005G220000--Sobic010G085200 Sobic005G220000--Sobic001G026500
Octagon: transcription factors


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