Gene annotation
Transcriptome id Sobic.005G225300.1
Synonym
Functional annotation -
UniProt A0A1B6PU48
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G249500 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
2 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
3 Sobic.009G237500 expressed protein -
4 Sobic.009G029700 aminotransferase, putative, expressed K00818: E2.6.1.11, acetylornithine aminotransferase
5 Sobic.001G426400 expressed protein -
6 Sobic.005G009300 expressed protein -
7 Sobic.001G445200 expressed protein -
8 Sobic.009G004800 - -
9 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
10 Sobic.004G287300 polyprenyl synthetase, putative, expressed K13789: geranylgeranyl diphosphate synthase, type II
11 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
12 Sobic.009G046800 TOC159, putative, expressed -
13 Sobic.003G283800 transmembrane protein, putative, expressed -
14 Sobic.010G268200 zinc finger, C3HC4 type, domain containing protein, expressed -
15 Sobic.001G341800 von Willebrand factor type A domain containing protein, expressed -
16 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
17 Sobic.001G437200 ATP-dependent Clp protease ATP-binding subunit, putative, expressed -
18 Sobic.006G265400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
19 Sobic.003G249100 HMG1/2, putative, expressed -
20 Sobic.006G269400 expressed protein -


Gene co-expression network
sample Sobic005G225300 Sobic005G225300 Sobic004G249500 Sobic004G249500 Sobic005G225300--Sobic004G249500 Sobic009G238100 Sobic009G238100 Sobic005G225300--Sobic009G238100 Sobic009G237500 Sobic009G237500 Sobic005G225300--Sobic009G237500 Sobic009G029700 Sobic009G029700 Sobic005G225300--Sobic009G029700 Sobic001G426400 Sobic001G426400 Sobic005G225300--Sobic001G426400 Sobic005G009300 Sobic005G009300 Sobic005G225300--Sobic005G009300 Sobic001G445200 Sobic001G445200 Sobic005G225300--Sobic001G445200 Sobic009G004800 Sobic009G004800 Sobic005G225300--Sobic009G004800 Sobic008G148400 Sobic008G148400 Sobic005G225300--Sobic008G148400 Sobic001G076200 Sobic001G076200 Sobic004G249500--Sobic001G076200 Sobic003G030400 Sobic003G030400 Sobic004G249500--Sobic003G030400 Sobic008G101500 Sobic008G101500 Sobic004G249500--Sobic008G101500 Sobic004G249500--Sobic009G238100 Sobic004G249500--Sobic001G426400 Sobic008G177850 Sobic008G177850 Sobic004G249500--Sobic008G177850 Sobic004G246800 Sobic004G246800 Sobic004G249500--Sobic004G246800 Sobic003G114100 Sobic003G114100 Sobic004G249500--Sobic003G114100 Sobic004G249500--Sobic005G009300 Sobic009G238100--Sobic008G148400 Sobic009G238100--Sobic001G426400 Sobic009G253000 Sobic009G253000 Sobic009G238100--Sobic009G253000 Sobic001G179100 Sobic001G179100 Sobic009G238100--Sobic001G179100 Sobic005G169600 Sobic005G169600 Sobic009G238100--Sobic005G169600 Sobic009G036300 Sobic009G036300 Sobic009G238100--Sobic009G036300 Sobic009G238100--Sobic003G030400 Sobic007G227600 Sobic007G227600 Sobic009G238100--Sobic007G227600 Sobic002G038300 Sobic002G038300 Sobic009G238100--Sobic002G038300 Sobic003G310100 Sobic003G310100 Sobic009G237500--Sobic003G310100 Sobic002G156100 Sobic002G156100 Sobic009G237500--Sobic002G156100 Sobic001G281500 Sobic001G281500 Sobic009G237500--Sobic001G281500 Sobic001G424300 Sobic001G424300 Sobic009G237500--Sobic001G424300 Sobic009G237500--Sobic001G445200 Sobic001G196200 Sobic001G196200 Sobic009G237500--Sobic001G196200 Sobic001G437200 Sobic001G437200 Sobic009G237500--Sobic001G437200 Sobic002G424100 Sobic002G424100 Sobic009G237500--Sobic002G424100 Sobic005G002900 Sobic005G002900 Sobic009G237500--Sobic005G002900 Sobic001G380500 Sobic001G380500 Sobic009G029700--Sobic001G380500 Sobic004G268100 Sobic004G268100 Sobic009G029700--Sobic004G268100 Sobic007G029100 Sobic007G029100 Sobic009G029700--Sobic007G029100 Sobic004G117800 Sobic004G117800 Sobic009G029700--Sobic004G117800 Sobic009G029700--Sobic001G437200 Sobic002G039000 Sobic002G039000 Sobic009G029700--Sobic002G039000 Sobic009G029700--Sobic003G310100 Sobic002G281800 Sobic002G281800 Sobic009G029700--Sobic002G281800 Sobic001G202500 Sobic001G202500 Sobic009G029700--Sobic001G202500 Sobic006G265400 Sobic006G265400 Sobic001G426400--Sobic006G265400 Sobic001G426400--Sobic008G148400 Sobic001G426400--Sobic009G238100 Sobic009G032100 Sobic009G032100 Sobic001G426400--Sobic009G032100 Sobic001G426400--Sobic004G249500 Sobic003G255100 Sobic003G255100 Sobic001G426400--Sobic003G255100 Sobic001G426400--Sobic003G030400 Sobic007G060900 Sobic007G060900 Sobic001G426400--Sobic007G060900 Sobic007G131200 Sobic007G131200 Sobic001G426400--Sobic007G131200 Sobic005G009300--Sobic001G445200 Sobic002G404900 Sobic002G404900 Sobic005G009300--Sobic002G404900 Sobic003G162800 Sobic003G162800 Sobic005G009300--Sobic003G162800 Sobic006G237100 Sobic006G237100 Sobic005G009300--Sobic006G237100 Sobic002G409900 Sobic002G409900 Sobic005G009300--Sobic002G409900 Sobic009G137000 Sobic009G137000 Sobic005G009300--Sobic009G137000 Sobic001G395300 Sobic001G395300 Sobic005G009300--Sobic001G395300 Sobic003G170200 Sobic003G170200 Sobic005G009300--Sobic003G170200 Sobic003G283800 Sobic003G283800 Sobic005G009300--Sobic003G283800 Sobic001G445200--Sobic006G237100 Sobic001G445200--Sobic005G009300 Sobic001G445200--Sobic001G437200 Sobic001G445200--Sobic001G281500 Sobic001G445200--Sobic002G404900 Sobic001G445200--Sobic003G310100 Sobic001G445200--Sobic002G156100 Sobic001G445200--Sobic002G409900 Sobic001G445200--Sobic003G162800 Sobic002G163700 Sobic002G163700 Sobic009G004800--Sobic002G163700 Sobic009G004800--Sobic009G036300 Sobic003G330100 Sobic003G330100 Sobic009G004800--Sobic003G330100 Sobic001G388400 Sobic001G388400 Sobic009G004800--Sobic001G388400 Sobic009G004800--Sobic003G310100 Sobic010G028000 Sobic010G028000 Sobic009G004800--Sobic010G028000 Sobic009G046800 Sobic009G046800 Sobic009G004800--Sobic009G046800 Sobic009G234200 Sobic009G234200 Sobic009G004800--Sobic009G234200 Sobic001G450600 Sobic001G450600 Sobic009G004800--Sobic001G450600 Sobic008G148400--Sobic009G238100 Sobic008G148400--Sobic001G426400 Sobic008G148400--Sobic003G030400 Sobic003G222600 Sobic003G222600 Sobic008G148400--Sobic003G222600 Sobic001G423100 Sobic001G423100 Sobic008G148400--Sobic001G423100 Sobic009G154600 Sobic009G154600 Sobic008G148400--Sobic009G154600 Sobic008G148400--Sobic007G131200 Sobic009G233800 Sobic009G233800 Sobic008G148400--Sobic009G233800 Sobic008G148400--Sobic006G265400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.